Wall clock time and date at job start Tue Mar 31 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00298 * 2 1 4 4 H 1.09000 * 110.53440 * 332.60865 * 3 2 1 5 5 C 1.54886 * 110.48923 * 95.22121 * 3 2 1 6 6 C 1.54895 * 102.74683 * 156.62284 * 5 3 2 7 7 C 1.54270 * 104.19718 * 322.05815 * 6 5 3 8 8 C 1.53880 * 106.59690 * 23.61131 * 7 6 5 9 9 H 1.09003 * 110.03094 * 240.66904 * 8 7 6 10 10 C 1.50701 * 110.03174 * 119.28222 * 8 7 6 11 11 O 1.21274 * 120.00126 * 241.45507 * 10 8 7 12 12 N 1.34774 * 119.99599 * 61.45566 * 10 8 7 13 13 C 1.39241 * 119.99618 * 184.03453 * 12 10 8 14 14 C 1.39482 * 119.83220 * 324.49213 * 13 12 10 15 15 C 1.36376 * 120.17017 * 179.71735 * 14 13 12 16 16 C 1.40873 * 119.82261 * 0.58074 * 15 14 13 17 17 C 1.41157 * 120.16094 * 179.67446 * 16 15 14 18 18 H 1.08002 * 119.99928 * 214.80360 * 17 16 15 19 19 C 1.39905 * 120.00290 * 34.80083 * 17 16 15 20 20 N 1.30877 * 119.99394 * 355.56320 * 19 17 16 21 21 Si 1.86796 * 120.00219 * 175.56830 * 19 17 16 22 22 H 1.48500 * 109.47434 * 89.99935 * 21 19 17 23 23 H 1.48501 * 109.46861 * 209.99834 * 21 19 17 24 24 H 1.48502 * 109.46725 * 329.99553 * 21 19 17 25 25 C 1.40871 * 119.67710 * 359.69789 * 16 15 14 26 26 C 1.36368 * 119.82328 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47176 * 300.00244 * 1 2 3 28 28 H 1.08996 * 109.47224 * 59.99845 * 1 2 3 29 29 H 1.08995 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.09003 * 110.75504 * 38.31248 * 5 3 2 31 31 H 1.08996 * 110.91499 * 275.01244 * 5 3 2 32 32 H 1.08999 * 110.48253 * 203.38649 * 6 5 3 33 33 H 1.08999 * 110.48442 * 80.73973 * 6 5 3 34 34 H 1.08993 * 110.03324 * 264.33074 * 7 6 5 35 35 H 1.08996 * 110.03226 * 142.89363 * 7 6 5 36 36 H 0.96997 * 120.00595 * 4.30157 * 12 10 8 37 37 H 1.08003 * 119.91611 * 0.02562 * 14 13 12 38 38 H 1.08000 * 120.09127 * 180.25429 * 15 14 13 39 39 H 0.97001 * 119.99240 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.08653 * 179.97438 * 25 16 15 41 41 H 1.08000 * 119.91671 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3379 2.0234 -0.4696 5 6 2.3514 1.7470 1.4449 6 6 3.4601 2.8063 1.2257 7 6 4.2950 2.2438 0.0568 8 6 3.3731 1.2896 -0.7226 9 1 3.7881 0.2816 -0.7165 10 6 3.2111 1.7722 -2.1410 11 8 2.1131 2.0768 -2.5562 12 7 4.2864 1.8654 -2.9481 13 6 4.1508 2.3902 -4.2307 14 6 2.9889 2.1438 -4.9620 15 6 2.8464 2.6592 -6.2165 16 6 3.8817 3.4321 -6.7781 17 6 3.7446 3.9633 -8.0787 18 1 4.6078 4.0439 -8.7229 19 6 2.4907 4.3854 -8.5334 20 7 1.4303 4.2081 -7.7870 21 14 2.3298 5.2018 -10.2058 22 1 2.0801 4.1661 -11.2404 23 1 1.1960 6.1605 -10.1816 24 1 3.5853 5.9278 -10.5250 25 6 5.0546 3.6718 -6.0357 26 6 5.1797 3.1552 -4.7798 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.7299 0.9064 2.0265 31 1 1.4831 2.1915 1.9311 32 1 4.0748 2.9056 2.1203 33 1 3.0218 3.7666 0.9542 34 1 5.1568 1.6988 0.4418 35 1 4.6252 3.0560 -0.5909 36 1 5.1540 1.5632 -2.6370 37 1 2.1980 1.5474 -4.5317 38 1 1.9445 2.4710 -6.7800 39 1 0.5610 4.5011 -8.1021 40 1 5.8527 4.2630 -6.4600 41 1 6.0781 3.3384 -4.2091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336847895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:49 Heat of formation + Delta-G solvation = -90.300009 kcal Electronic energy + Delta-G solvation = -22723.871797 eV Core-core repulsion = 19374.111613 eV Total energy + Delta-G solvation = -3349.760184 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61880 -39.82102 -38.71301 -36.85364 -36.18494 -34.69184 -31.57530 -31.21136 -29.96673 -29.22192 -27.11970 -26.65861 -23.71485 -23.07083 -22.06172 -21.67730 -20.61347 -19.24145 -18.73554 -18.14714 -17.40418 -17.09224 -16.44730 -16.14798 -15.91904 -15.76576 -15.44013 -14.93296 -14.68401 -14.49577 -14.32985 -13.99958 -13.66477 -13.49423 -13.36210 -12.94359 -12.87382 -12.70420 -12.39849 -12.32308 -12.25789 -12.06688 -11.80075 -11.71504 -11.63756 -11.55043 -11.17276 -10.73954 -10.53491 -10.42908 -9.46629 -8.76332 -8.50531 -6.34092 0.79617 1.11722 1.38063 1.43606 1.53182 1.77759 2.22048 2.26547 2.80864 2.83941 3.38873 3.59569 3.67433 3.88904 4.18872 4.28419 4.38266 4.42276 4.43715 4.46200 4.49323 4.54138 4.64235 4.71323 4.80584 4.95986 4.98390 5.06201 5.11292 5.14372 5.15224 5.19471 5.33477 5.38550 5.42286 5.69958 5.86204 6.07095 6.13832 6.21615 6.34178 6.68559 6.71362 6.95049 7.01157 7.39197 8.42421 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025890 B = 0.003553 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.241316 B = 7878.879496 C = 8507.831633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.088 3.912 4 H 0.057 0.943 5 C -0.133 4.133 6 C -0.120 4.120 7 C -0.110 4.110 8 C -0.104 4.104 9 H 0.125 0.875 10 C 0.502 3.498 11 O -0.578 6.578 12 N -0.641 5.641 13 C 0.019 3.981 14 C -0.110 4.110 15 C -0.169 4.169 16 C 0.066 3.934 17 C -0.497 4.497 18 H 0.081 0.919 19 C 0.022 3.978 20 N -0.848 5.848 21 Si 0.991 3.009 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.209 4.209 26 C -0.106 4.106 27 H 0.057 0.943 28 H 0.024 0.976 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.419 0.581 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.282 0.718 40 H 0.114 0.886 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 -4.603 17.401 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.317 6.317 3 C 0.029 3.971 4 H 0.075 0.925 5 C -0.171 4.171 6 C -0.157 4.157 7 C -0.147 4.147 8 C -0.125 4.125 9 H 0.143 0.857 10 C 0.291 3.709 11 O -0.457 6.457 12 N -0.286 5.286 13 C -0.074 4.074 14 C -0.130 4.130 15 C -0.189 4.189 16 C 0.064 3.936 17 C -0.528 4.528 18 H 0.099 0.901 19 C -0.189 4.189 20 N -0.476 5.476 21 Si 0.812 3.188 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.178 1.178 25 C -0.229 4.229 26 C -0.126 4.126 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.257 0.743 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.132 0.868 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.748 -4.518 17.149 18.126 hybrid contribution -0.616 0.414 -1.034 1.273 sum 3.131 -4.104 16.116 16.922 Atomic orbital electron populations 1.22875 0.80069 1.03640 1.00062 1.87788 1.20948 1.27916 1.95096 1.22999 0.93185 0.84623 0.96254 0.92534 1.22907 0.99670 0.99758 0.94742 1.22298 0.96893 0.97640 0.98896 1.22164 0.98041 0.97873 0.96656 1.22041 0.98230 1.03164 0.89115 0.85703 1.21350 0.83834 0.77099 0.88588 1.90678 1.27403 1.50760 1.76867 1.42880 1.12217 1.61555 1.11968 1.17383 0.97605 1.05889 0.86552 1.20641 0.97169 1.00871 0.94313 1.21165 1.01142 1.00669 0.95960 1.18059 0.91795 0.89668 0.94090 1.19785 0.95290 1.38151 0.99580 0.90132 1.26864 0.94498 0.95039 1.02505 1.69924 1.00413 1.38828 1.38477 0.85064 0.78973 0.78371 0.76398 1.18697 1.19768 1.17792 1.20972 0.99978 1.06360 0.95557 1.20447 0.98426 0.97562 0.96121 0.92410 0.95689 0.88044 0.89010 0.90564 0.88110 0.92357 0.87056 0.91630 0.74349 0.89003 0.87874 0.90795 0.86792 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.85 113.37 1.23 1.91 16 2 O -0.40 -10.86 10.41 -148.98 -1.55 -12.41 16 3 C 0.09 2.28 2.66 31.67 0.08 2.36 16 4 H 0.06 1.83 6.58 -2.39 -0.02 1.81 16 5 C -0.13 -2.36 6.62 31.89 0.21 -2.14 16 6 C -0.12 -1.88 6.83 31.67 0.22 -1.66 16 7 C -0.11 -1.88 6.39 31.32 0.20 -1.68 16 8 C -0.10 -2.55 3.06 -10.81 -0.03 -2.58 16 9 H 0.13 2.65 8.07 -2.39 -0.02 2.63 16 10 C 0.50 17.82 6.76 87.66 0.59 18.41 16 11 O -0.58 -26.82 12.86 -3.01 -0.04 -26.86 16 12 N -0.64 -21.69 5.14 -303.12 -1.56 -23.25 16 13 C 0.02 0.85 6.30 38.56 0.24 1.09 16 14 C -0.11 -5.80 8.61 22.14 0.19 -5.61 16 15 C -0.17 -9.75 8.62 22.48 0.19 -9.55 16 16 C 0.07 3.70 5.55 -21.27 -0.12 3.58 16 17 C -0.50 -27.62 9.02 23.39 0.21 -27.41 16 18 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 19 C 0.02 1.17 5.42 85.24 0.46 1.64 16 20 N -0.85 -48.05 10.60 21.82 0.23 -47.82 16 21 Si 0.99 40.20 29.56 68.60 2.03 42.23 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 25 C -0.21 -10.05 9.74 22.48 0.22 -9.83 16 26 C -0.11 -4.42 9.90 22.13 0.22 -4.20 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.02 0.67 8.11 -2.39 -0.02 0.65 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.29 7.59 -2.39 -0.02 1.27 16 36 H 0.42 10.14 8.82 -92.71 -0.82 9.32 16 37 H 0.09 5.03 6.25 -2.91 -0.02 5.01 16 38 H 0.10 6.38 6.13 -2.91 -0.02 6.36 16 39 H 0.28 14.63 8.30 -92.71 -0.77 13.86 16 40 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 41 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -72.64 337.01 3.45 -69.18 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.22 Total: 34.62 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 4.12 Total: -35.69 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -1.33 Total: -71.07 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.59 Total: -39.27 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -72.64 3.45 -69.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336847895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.117 kcal (2) G-P(sol) polarization free energy of solvation -72.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds