Wall clock time and date at job start Tue Mar 31 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99437 * 2 1 4 4 H 1.08998 * 110.81885 * 26.66448 * 3 2 1 5 5 C 1.55037 * 110.87580 * 263.31625 * 3 2 1 6 6 C 1.54261 * 104.28224 * 203.90348 * 5 3 2 7 7 C 1.53877 * 106.59893 * 23.51827 * 6 5 3 8 8 C 1.54267 * 106.59851 * 0.02562 * 7 6 5 9 9 H 1.08993 * 110.49072 * 95.19967 * 8 7 6 10 10 C 1.50705 * 110.48434 * 217.71666 * 8 7 6 11 11 O 1.21284 * 120.00219 * 116.76174 * 10 8 7 12 12 N 1.34777 * 119.99767 * 296.75214 * 10 8 7 13 13 C 1.39234 * 120.00223 * 175.51055 * 12 10 8 14 14 C 1.39479 * 119.83438 * 215.66234 * 13 12 10 15 15 C 1.36371 * 120.16897 * 180.27885 * 14 13 12 16 16 C 1.40868 * 119.83178 * 359.97438 * 15 14 13 17 17 C 1.41145 * 120.16649 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99932 * 205.52309 * 17 16 15 19 19 C 1.39906 * 120.00129 * 25.52215 * 17 16 15 20 20 N 1.30872 * 119.99953 * 17.06649 * 19 17 16 21 21 Si 1.86797 * 120.00118 * 197.05748 * 19 17 16 22 22 H 1.48506 * 109.47102 * 90.00145 * 21 19 17 23 23 H 1.48497 * 109.47454 * 210.00294 * 21 19 17 24 24 H 1.48504 * 109.47360 * 330.00488 * 21 19 17 25 25 C 1.40872 * 119.66667 * 0.02562 * 16 15 14 26 26 C 1.36368 * 119.83235 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47555 * 60.00427 * 1 2 3 28 28 H 1.09000 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47103 * 300.00039 * 1 2 3 30 30 H 1.08997 * 110.51905 * 85.15396 * 5 3 2 31 31 H 1.08999 * 110.36218 * 322.57485 * 5 3 2 32 32 H 1.09001 * 110.03008 * 264.23720 * 6 5 3 33 33 H 1.08993 * 110.07600 * 142.82633 * 6 5 3 34 34 H 1.09004 * 110.02876 * 240.71675 * 7 6 5 35 35 H 1.08992 * 110.07542 * 119.30999 * 7 6 5 36 36 H 0.97003 * 119.99867 * 355.50859 * 12 10 8 37 37 H 1.08004 * 119.91735 * 0.24779 * 14 13 12 38 38 H 1.08004 * 120.08360 * 180.02562 * 15 14 13 39 39 H 0.96993 * 120.00287 * 180.02562 * 20 19 17 40 40 H 1.08006 * 120.07999 * 179.97438 * 25 16 15 41 41 H 1.07999 * 119.91930 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3359 2.0297 0.4572 5 6 2.3889 1.7417 -1.4387 6 6 3.4990 2.7938 -1.2377 7 6 4.1288 2.5110 0.1375 8 6 3.3798 1.2965 0.7239 9 1 3.9199 0.3747 0.5081 10 6 3.1912 1.4604 2.2100 11 8 2.0736 1.5413 2.6743 12 7 4.2644 1.5168 3.0233 13 6 4.0952 1.7617 4.3835 14 6 5.0369 2.5249 5.0736 15 6 4.8808 2.7642 6.4070 16 6 3.7648 2.2389 7.0873 17 6 3.5965 2.4817 8.4675 18 1 3.0259 1.7919 9.0716 19 6 4.1690 3.6160 9.0531 20 7 4.5651 4.6114 8.3013 21 14 4.3680 3.7100 10.9081 22 1 5.6884 3.1501 11.2934 23 1 4.2852 5.1273 11.3437 24 1 3.2886 2.9273 11.5620 25 6 2.8180 1.4691 6.3835 26 6 2.9881 1.2374 5.0504 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5297 2.1849 -1.9422 31 1 2.7674 0.8911 -2.0056 32 1 3.0707 3.7960 -1.2532 33 1 4.2517 2.6976 -2.0200 34 1 4.0061 3.3761 0.7893 35 1 5.1871 2.2770 0.0233 36 1 5.1548 1.3868 2.6611 37 1 5.8921 2.9269 4.5507 38 1 5.6107 3.3556 6.9400 39 1 4.9623 5.3976 8.7072 40 1 1.9600 1.0627 6.8985 41 1 2.2628 0.6477 4.5093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336847907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:58 Heat of formation + Delta-G solvation = -73.138953 kcal Electronic energy + Delta-G solvation = -22636.758320 eV Core-core repulsion = 19287.742295 eV Total energy + Delta-G solvation = -3349.016025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15105 -38.42815 -37.05154 -35.90176 -34.40049 -32.93451 -29.93324 -29.48988 -28.49693 -28.31932 -26.08788 -24.90505 -22.29484 -21.18315 -20.69548 -20.42261 -19.34478 -17.48120 -17.17028 -16.92092 -16.03281 -15.29364 -15.19660 -14.85368 -14.82391 -14.42725 -13.92557 -13.54659 -13.38724 -12.95112 -12.75184 -12.55367 -12.14932 -12.05722 -11.78887 -11.59559 -11.40433 -11.37559 -11.25075 -11.11880 -10.94843 -10.75228 -10.67664 -10.63215 -9.97737 -9.56241 -9.52184 -9.30038 -9.04086 -8.82437 -7.52058 -6.97406 -6.73429 -4.29263 2.60007 3.02663 3.07679 3.11353 3.12473 3.36281 3.65673 3.88073 3.93824 4.33593 4.54074 4.63546 4.79027 5.16640 5.24635 5.26201 5.30648 5.37920 5.42123 5.48788 5.58364 5.71662 5.72395 5.73219 5.84641 5.94365 6.01429 6.12935 6.21782 6.48952 6.80842 6.97540 7.06145 7.21215 7.23402 7.31547 7.62140 7.76179 7.91921 8.05406 8.30239 8.33437 8.60968 8.81421 8.89634 9.02798 10.18715 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.003313 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.732259 B = 8449.806288 C = 8982.014633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.103 3.897 4 H 0.083 0.917 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.112 4.112 9 H 0.106 0.894 10 C 0.508 3.492 11 O -0.531 6.531 12 N -0.650 5.650 13 C -0.009 4.009 14 C -0.113 4.113 15 C -0.154 4.154 16 C 0.106 3.894 17 C -0.459 4.459 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.217 4.217 26 C -0.076 4.076 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.394 0.606 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.280 0.720 40 H 0.094 0.906 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 -3.142 -15.914 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C 0.044 3.956 4 H 0.101 0.899 5 C -0.183 4.183 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.134 4.134 9 H 0.124 0.876 10 C 0.294 3.706 11 O -0.408 6.408 12 N -0.292 5.292 13 C -0.101 4.101 14 C -0.133 4.133 15 C -0.174 4.174 16 C 0.104 3.896 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.734 3.266 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.237 4.237 26 C -0.096 4.096 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.438 -2.989 -15.579 15.869 hybrid contribution 0.386 0.377 0.631 0.830 sum -0.051 -2.612 -14.948 15.174 Atomic orbital electron populations 1.22748 0.81009 1.02421 1.00073 1.87837 1.19829 1.27215 1.94783 1.22942 0.93466 0.85431 0.93737 0.89908 1.22846 0.98828 0.99232 0.97395 1.22015 0.97789 0.99106 0.96839 1.22061 0.99518 0.97047 0.96600 1.22225 0.97881 1.00997 0.92278 0.87622 1.20329 0.85112 0.77275 0.87876 1.90661 1.24187 1.49266 1.76668 1.42962 1.08691 1.70170 1.07366 1.17190 1.02084 1.09147 0.81688 1.20231 0.98389 0.99144 0.95549 1.20882 0.99181 1.04396 0.92938 1.17664 0.89481 0.89389 0.93111 1.19570 1.28957 1.06472 0.93847 0.90368 1.25921 0.93035 0.94653 1.00679 1.69844 1.29960 1.04325 1.37791 0.86296 0.79819 0.78126 0.82383 1.19284 1.20349 1.18609 1.20676 1.00473 1.09052 0.93549 1.20379 0.96509 0.98645 0.94054 0.94532 0.89973 0.93319 0.91389 0.90580 0.91407 0.91230 0.90742 0.90554 0.77255 0.89229 0.86179 0.90895 0.88770 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 101.05 1.10 1.49 16 2 O -0.38 -5.37 10.50 -35.23 -0.37 -5.74 16 3 C 0.10 1.35 2.42 -24.64 -0.06 1.29 16 4 H 0.08 1.22 7.18 -51.93 -0.37 0.85 16 5 C -0.15 -1.43 6.56 -24.99 -0.16 -1.59 16 6 C -0.12 -1.07 6.80 -25.61 -0.17 -1.24 16 7 C -0.11 -1.20 6.34 -25.61 -0.16 -1.36 16 8 C -0.11 -1.48 2.97 -90.09 -0.27 -1.74 16 9 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 10 C 0.51 9.11 6.84 -10.98 -0.08 9.03 16 11 O -0.53 -11.69 13.19 5.55 0.07 -11.62 16 12 N -0.65 -11.68 5.26 -9.74 -0.05 -11.73 16 13 C -0.01 -0.20 6.29 -83.57 -0.53 -0.73 16 14 C -0.11 -2.61 9.90 -39.79 -0.39 -3.00 16 15 C -0.15 -3.99 8.63 -39.26 -0.34 -4.33 16 16 C 0.11 2.88 5.57 -106.80 -0.59 2.29 16 17 C -0.46 -12.31 9.04 -37.85 -0.34 -12.65 16 18 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 19 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 20 N -0.79 -20.56 10.97 55.55 0.61 -19.95 16 21 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.22 -5.64 9.74 -39.26 -0.38 -6.02 16 26 C -0.08 -1.87 8.62 -39.79 -0.34 -2.22 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.89 7.83 -51.93 -0.41 0.48 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.39 5.60 8.82 -40.82 -0.36 5.24 16 37 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 38 H 0.12 3.17 6.20 -52.48 -0.33 2.85 16 39 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 40 H 0.09 2.33 8.06 -52.48 -0.42 1.90 16 41 H 0.11 2.60 6.25 -52.49 -0.33 2.27 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -30.83 338.37 -8.48 -39.30 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.99 Total: 9.95 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.82 Total: -18.98 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.56 Total: -31.68 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.30 Total: -17.36 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.83 -8.48 -39.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336847907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.835 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds