Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99437 * 2 1 4 4 H 1.08998 * 110.81885 * 26.66448 * 3 2 1 5 5 C 1.55037 * 110.87580 * 263.31625 * 3 2 1 6 6 C 1.54261 * 104.28224 * 203.90348 * 5 3 2 7 7 C 1.53877 * 106.59893 * 23.51827 * 6 5 3 8 8 C 1.54267 * 106.59851 * 0.02562 * 7 6 5 9 9 H 1.08993 * 110.49072 * 95.19967 * 8 7 6 10 10 C 1.50705 * 110.48434 * 217.71666 * 8 7 6 11 11 O 1.21284 * 120.00219 * 116.76174 * 10 8 7 12 12 N 1.34777 * 119.99767 * 296.75214 * 10 8 7 13 13 C 1.39234 * 120.00223 * 175.51055 * 12 10 8 14 14 C 1.39479 * 119.83438 * 215.66234 * 13 12 10 15 15 C 1.36371 * 120.16897 * 180.27885 * 14 13 12 16 16 C 1.40868 * 119.83178 * 359.97438 * 15 14 13 17 17 C 1.41145 * 120.16649 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99932 * 205.52309 * 17 16 15 19 19 C 1.39906 * 120.00129 * 25.52215 * 17 16 15 20 20 N 1.30872 * 119.99953 * 17.06649 * 19 17 16 21 21 Si 1.86797 * 120.00118 * 197.05748 * 19 17 16 22 22 H 1.48506 * 109.47102 * 90.00145 * 21 19 17 23 23 H 1.48497 * 109.47454 * 210.00294 * 21 19 17 24 24 H 1.48504 * 109.47360 * 330.00488 * 21 19 17 25 25 C 1.40872 * 119.66667 * 0.02562 * 16 15 14 26 26 C 1.36368 * 119.83235 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47555 * 60.00427 * 1 2 3 28 28 H 1.09000 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47103 * 300.00039 * 1 2 3 30 30 H 1.08997 * 110.51905 * 85.15396 * 5 3 2 31 31 H 1.08999 * 110.36218 * 322.57485 * 5 3 2 32 32 H 1.09001 * 110.03008 * 264.23720 * 6 5 3 33 33 H 1.08993 * 110.07600 * 142.82633 * 6 5 3 34 34 H 1.09004 * 110.02876 * 240.71675 * 7 6 5 35 35 H 1.08992 * 110.07542 * 119.30999 * 7 6 5 36 36 H 0.97003 * 119.99867 * 355.50859 * 12 10 8 37 37 H 1.08004 * 119.91735 * 0.24779 * 14 13 12 38 38 H 1.08004 * 120.08360 * 180.02562 * 15 14 13 39 39 H 0.96993 * 120.00287 * 180.02562 * 20 19 17 40 40 H 1.08006 * 120.07999 * 179.97438 * 25 16 15 41 41 H 1.07999 * 119.91930 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3359 2.0297 0.4572 5 6 2.3889 1.7417 -1.4387 6 6 3.4990 2.7938 -1.2377 7 6 4.1288 2.5110 0.1375 8 6 3.3798 1.2965 0.7239 9 1 3.9199 0.3747 0.5081 10 6 3.1912 1.4604 2.2100 11 8 2.0736 1.5413 2.6743 12 7 4.2644 1.5168 3.0233 13 6 4.0952 1.7617 4.3835 14 6 5.0369 2.5249 5.0736 15 6 4.8808 2.7642 6.4070 16 6 3.7648 2.2389 7.0873 17 6 3.5965 2.4817 8.4675 18 1 3.0259 1.7919 9.0716 19 6 4.1690 3.6160 9.0531 20 7 4.5651 4.6114 8.3013 21 14 4.3680 3.7100 10.9081 22 1 5.6884 3.1501 11.2934 23 1 4.2852 5.1273 11.3437 24 1 3.2886 2.9273 11.5620 25 6 2.8180 1.4691 6.3835 26 6 2.9881 1.2374 5.0504 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5297 2.1849 -1.9422 31 1 2.7674 0.8911 -2.0056 32 1 3.0707 3.7960 -1.2532 33 1 4.2517 2.6976 -2.0200 34 1 4.0061 3.3761 0.7893 35 1 5.1871 2.2770 0.0233 36 1 5.1548 1.3868 2.6611 37 1 5.8921 2.9269 4.5507 38 1 5.6107 3.3556 6.9400 39 1 4.9623 5.3976 8.7072 40 1 1.9600 1.0627 6.8985 41 1 2.2628 0.6477 4.5093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336847907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = -91.846337 kcal Electronic energy + Delta-G solvation = -22637.569533 eV Core-core repulsion = 19287.742295 eV Total energy + Delta-G solvation = -3349.827238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53057 -39.79604 -38.69594 -36.88036 -36.17422 -34.73458 -31.54620 -31.26257 -29.94812 -29.23842 -27.10009 -26.66103 -23.84477 -22.95280 -22.10236 -21.47681 -20.73294 -19.31501 -18.59502 -18.16583 -17.51465 -17.02570 -16.45100 -16.08147 -15.82253 -15.79758 -15.57190 -14.95504 -14.64031 -14.42932 -14.23671 -13.99960 -13.74080 -13.48113 -13.24287 -13.09049 -12.86732 -12.77351 -12.54864 -12.40889 -12.27740 -12.12686 -11.77847 -11.65493 -11.45659 -11.37511 -11.14330 -10.77642 -10.51842 -10.48846 -9.48728 -8.88074 -8.61939 -6.29723 0.79577 1.12336 1.38777 1.45342 1.52330 1.79933 2.21232 2.31964 2.73278 2.83322 3.38458 3.60737 3.70200 3.89435 4.21676 4.27029 4.38061 4.39210 4.44000 4.48559 4.50805 4.54077 4.63225 4.67941 4.81919 4.90967 5.00027 5.05091 5.10776 5.15255 5.16109 5.23044 5.31174 5.40033 5.43484 5.64872 5.89248 6.01790 6.09355 6.24680 6.35998 6.63129 6.74188 6.91318 6.97649 7.41505 8.32143 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.003313 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.732259 B = 8449.806288 C = 8982.014633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.398 6.398 3 C 0.094 3.906 4 H 0.057 0.943 5 C -0.135 4.135 6 C -0.115 4.115 7 C -0.110 4.110 8 C -0.105 4.105 9 H 0.126 0.874 10 C 0.504 3.496 11 O -0.577 6.577 12 N -0.641 5.641 13 C 0.005 3.995 14 C -0.109 4.109 15 C -0.171 4.171 16 C 0.076 3.924 17 C -0.498 4.498 18 H 0.073 0.927 19 C 0.036 3.964 20 N -0.823 5.823 21 Si 0.986 3.014 22 H -0.259 1.259 23 H -0.267 1.267 24 H -0.262 1.262 25 C -0.237 4.237 26 C -0.089 4.089 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.417 0.583 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.290 0.710 40 H 0.091 0.909 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -2.898 -17.837 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.317 6.317 3 C 0.035 3.965 4 H 0.075 0.925 5 C -0.172 4.172 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.126 4.126 9 H 0.144 0.856 10 C 0.293 3.707 11 O -0.456 6.456 12 N -0.286 5.286 13 C -0.088 4.088 14 C -0.129 4.129 15 C -0.191 4.191 16 C 0.074 3.926 17 C -0.527 4.527 18 H 0.091 0.909 19 C -0.179 4.179 20 N -0.449 5.449 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.191 1.191 24 H -0.186 1.186 25 C -0.257 4.257 26 C -0.109 4.109 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.254 0.746 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.177 -2.753 -17.550 17.803 hybrid contribution -0.170 0.268 1.093 1.138 sum 1.007 -2.485 -16.456 16.673 Atomic orbital electron populations 1.22856 0.80046 1.03508 1.00074 1.87790 1.21001 1.27907 1.95013 1.23072 0.92854 0.84596 0.95950 0.92515 1.22793 0.99656 0.99881 0.94906 1.22035 0.97962 0.98812 0.96435 1.22113 1.00982 0.94822 0.96917 1.22301 0.98874 1.03256 0.88169 0.85646 1.21291 0.84105 0.75411 0.89905 1.90649 1.26072 1.50968 1.77911 1.42897 1.10243 1.69960 1.05484 1.17261 1.00623 1.07176 0.83778 1.20503 0.99365 0.98309 0.94739 1.20910 0.98904 1.05066 0.94226 1.17978 0.90353 0.90375 0.93899 1.19794 1.30940 1.07739 0.94233 0.90860 1.26762 0.91957 0.93525 1.05671 1.69876 1.30167 1.04892 1.40004 0.85156 0.79903 0.78539 0.75802 1.18303 1.19130 1.18560 1.20789 1.00694 1.09886 0.94345 1.20463 0.97463 0.99242 0.93709 0.92292 0.88416 0.95543 0.90364 0.89513 0.91210 0.88582 0.92516 0.87618 0.74625 0.85624 0.87075 0.89949 0.89073 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.85 113.37 1.23 1.95 16 2 O -0.40 -10.96 10.50 -148.98 -1.56 -12.52 16 3 C 0.09 2.35 2.42 31.95 0.08 2.43 16 4 H 0.06 1.70 7.18 -2.39 -0.02 1.68 16 5 C -0.13 -2.24 6.56 31.72 0.21 -2.03 16 6 C -0.11 -1.62 6.80 31.32 0.21 -1.40 16 7 C -0.11 -1.96 6.34 31.32 0.20 -1.76 16 8 C -0.10 -2.54 2.97 -10.45 -0.03 -2.57 16 9 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 10 C 0.50 17.76 6.84 87.66 0.60 18.36 16 11 O -0.58 -26.00 13.19 -3.04 -0.04 -26.04 16 12 N -0.64 -22.18 5.26 -303.11 -1.60 -23.77 16 13 C 0.01 0.23 6.29 38.57 0.24 0.47 16 14 C -0.11 -4.97 9.90 22.13 0.22 -4.75 16 15 C -0.17 -9.03 8.63 22.48 0.19 -8.84 16 16 C 0.08 4.31 5.57 -21.28 -0.12 4.19 16 17 C -0.50 -27.72 9.04 23.39 0.21 -27.51 16 18 H 0.07 3.98 7.90 -2.91 -0.02 3.95 16 19 C 0.04 1.83 5.14 85.24 0.44 2.27 16 20 N -0.82 -43.23 10.97 21.82 0.24 -42.99 16 21 Si 0.99 38.54 29.59 68.60 2.03 40.57 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 C -0.24 -12.89 9.74 22.48 0.22 -12.67 16 26 C -0.09 -4.51 8.62 22.13 0.19 -4.32 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.03 0.70 8.12 -2.38 -0.02 0.68 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 1.23 7.83 -2.38 -0.02 1.21 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.42 10.66 8.82 -92.71 -0.82 9.85 16 37 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.11 6.00 6.20 -2.91 -0.02 5.98 16 39 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 40 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.10 5.17 6.25 -2.91 -0.02 5.16 16 Total: -1.00 -69.97 338.37 3.38 -66.59 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.22 Total: 34.35 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 4.09 Total: -36.18 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -1.36 Total: -66.76 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.60 Total: -38.56 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -69.97 3.38 -66.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336847907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.258 kcal (2) G-P(sol) polarization free energy of solvation -69.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds