Wall clock time and date at job start Tue Mar 31 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00004 * 2 1 4 4 H 1.09000 * 110.53888 * 332.60922 * 3 2 1 5 5 C 1.54890 * 110.48815 * 95.22285 * 3 2 1 6 6 C 1.54891 * 102.74871 * 156.62270 * 5 3 2 7 7 C 1.54269 * 104.19495 * 322.05637 * 6 5 3 8 8 C 1.53877 * 106.59783 * 23.61035 * 7 6 5 9 9 H 1.09006 * 110.03172 * 240.66446 * 8 7 6 10 10 C 1.50697 * 110.03111 * 119.28719 * 8 7 6 11 11 O 1.21279 * 120.00015 * 241.45718 * 10 8 7 12 12 N 1.34783 * 120.00244 * 61.45517 * 10 8 7 13 13 C 1.37138 * 119.99728 * 5.12136 * 12 10 8 14 14 H 1.08002 * 120.00297 * 342.58076 * 13 12 10 15 15 C 1.38888 * 119.99753 * 162.85748 * 13 12 10 16 16 N 1.31424 * 120.00237 * 339.81690 * 15 13 12 17 17 Si 1.86803 * 119.99932 * 159.82186 * 15 13 12 18 18 H 1.48490 * 109.47237 * 59.99770 * 17 15 13 19 19 H 1.48503 * 109.47170 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46828 * 299.99640 * 17 15 13 21 21 C 1.39785 * 120.00033 * 185.12689 * 12 10 8 22 22 C 1.38965 * 120.08000 * 111.35403 * 21 12 10 23 23 C 1.38081 * 119.91934 * 179.72233 * 22 21 12 24 24 C 1.38304 * 120.07998 * 0.57737 * 23 22 21 25 25 C 1.38312 * 120.15852 * 359.69933 * 24 23 22 26 26 C 1.38082 * 120.07221 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47639 * 300.00449 * 1 2 3 29 29 H 1.09003 * 109.47163 * 60.00333 * 1 2 3 30 30 H 1.08994 * 110.75416 * 38.30428 * 5 3 2 31 31 H 1.08999 * 110.91125 * 275.00452 * 5 3 2 32 32 H 1.08997 * 110.48693 * 203.38035 * 6 5 3 33 33 H 1.09000 * 110.48882 * 80.73046 * 6 5 3 34 34 H 1.09003 * 110.03212 * 264.32654 * 7 6 5 35 35 H 1.08997 * 110.03762 * 142.89725 * 7 6 5 36 36 H 0.97002 * 120.00287 * 185.07270 * 16 15 13 37 37 H 1.07991 * 120.03558 * 0.02734 * 22 21 12 38 38 H 1.08002 * 119.95715 * 180.30185 * 23 22 21 39 39 H 1.08004 * 119.92296 * 179.71837 * 24 23 22 40 40 H 1.07993 * 119.96386 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.03846 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3378 2.0234 -0.4696 5 6 2.3513 1.7470 1.4449 6 6 3.4599 2.8063 1.2258 7 6 4.2949 2.2439 0.0569 8 6 3.3731 1.2896 -0.7225 9 1 3.7881 0.2817 -0.7165 10 6 3.2111 1.7722 -2.1409 11 8 2.1131 2.0768 -2.5562 12 7 4.2865 1.8654 -2.9481 13 6 5.5098 1.4227 -2.5142 14 1 5.6844 1.2652 -1.4601 15 6 6.5261 1.1825 -3.4299 16 7 6.2366 0.9886 -4.6971 17 14 8.3045 1.1347 -2.8603 18 1 8.4716 0.0605 -1.8488 19 1 9.1891 0.8625 -4.0216 20 1 8.6665 2.4428 -2.2577 21 6 4.1549 2.4133 -4.2273 22 6 4.7382 3.6393 -4.5233 23 6 4.6110 4.1747 -5.7897 24 6 3.8939 3.4980 -6.7596 25 6 3.3070 2.2802 -6.4669 26 6 3.4359 1.7357 -5.2046 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.7297 0.9064 2.0265 31 1 1.4830 2.1916 1.9311 32 1 4.0747 2.9058 2.1204 33 1 3.0217 3.7666 0.9541 34 1 5.1568 1.6989 0.4419 35 1 4.6251 3.0560 -0.5908 36 1 6.9372 0.7482 -5.3235 37 1 5.2946 4.1703 -3.7652 38 1 5.0682 5.1252 -6.0218 39 1 3.7921 3.9213 -7.7480 40 1 2.7482 1.7543 -7.2267 41 1 2.9771 0.7849 -4.9765 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348779903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:00 Heat of formation + Delta-G solvation = -48.749126 kcal Electronic energy + Delta-G solvation = -23992.715894 eV Core-core repulsion = 20644.757491 eV Total energy + Delta-G solvation = -3347.958403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83001 -38.36908 -36.92615 -35.36120 -34.73436 -31.68033 -29.87993 -29.71454 -28.06560 -27.72974 -25.73036 -24.96155 -22.25685 -21.49998 -20.52771 -20.25931 -18.86550 -17.78129 -16.82531 -15.91969 -15.38556 -15.07190 -14.77953 -14.71754 -14.44452 -14.13736 -14.05539 -13.32390 -13.26370 -13.00412 -12.53301 -12.40752 -12.12619 -11.65503 -11.59045 -11.48179 -11.13498 -11.10163 -11.04021 -10.81936 -10.70667 -10.46404 -10.36597 -10.26210 -10.16296 -10.02640 -9.35068 -9.15269 -8.52894 -8.25797 -7.85323 -7.38954 -6.30076 -3.98338 2.45850 2.50944 3.09255 3.19009 3.19372 3.75451 3.98617 4.15942 4.60598 4.83705 4.92093 5.05053 5.14848 5.32833 5.54969 5.65616 5.78954 5.79475 5.84502 5.85964 5.90249 5.91988 5.96380 6.00687 6.05823 6.14629 6.27517 6.39499 6.46458 6.51800 6.56976 6.62090 6.72090 6.84671 7.04799 7.33586 7.40437 7.46148 7.62337 7.65243 7.77277 8.00320 8.43593 9.00620 9.37904 9.80491 10.61969 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.006898 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.806233 B = 4058.177470 C = 5182.478720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.096 3.904 4 H 0.084 0.916 5 C -0.144 4.144 6 C -0.123 4.123 7 C -0.105 4.105 8 C -0.089 4.089 9 H 0.102 0.898 10 C 0.474 3.526 11 O -0.595 6.595 12 N -0.408 5.408 13 C -0.360 4.360 14 H 0.108 0.892 15 C 0.047 3.953 16 N -0.843 5.843 17 Si 0.915 3.085 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.238 3.762 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.150 4.150 25 C -0.119 4.119 26 C -0.081 4.081 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.272 0.728 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 2.352 5.990 7.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.038 3.962 4 H 0.102 0.898 5 C -0.182 4.182 6 C -0.161 4.161 7 C -0.144 4.144 8 C -0.111 4.111 9 H 0.120 0.880 10 C 0.265 3.735 11 O -0.481 6.481 12 N -0.123 5.123 13 C -0.486 4.486 14 H 0.126 0.874 15 C -0.161 4.161 16 N -0.477 5.477 17 Si 0.741 3.259 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.197 1.197 21 C 0.147 3.853 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.169 4.169 25 C -0.137 4.137 26 C -0.100 4.100 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.904 2.332 5.574 7.194 hybrid contribution 1.066 -0.097 0.068 1.073 sum -2.838 2.234 5.642 6.699 Atomic orbital electron populations 1.22692 0.81806 1.01923 0.99777 1.87860 1.19156 1.28112 1.94843 1.22949 0.94624 0.84773 0.93825 0.89765 1.22949 0.98655 0.99102 0.97452 1.22309 0.97046 0.98227 0.98507 1.22050 0.97311 0.98934 0.96057 1.21585 0.95078 1.01738 0.92668 0.87978 1.20051 0.83510 0.81987 0.88001 1.90536 1.25384 1.55283 1.76860 1.41270 1.08395 1.51833 1.10802 1.19667 0.86766 1.47549 0.94586 0.87422 1.25247 1.00179 0.95703 0.95010 1.69905 1.33921 1.40843 1.03046 0.86187 0.82360 0.79021 0.78351 1.19748 1.20881 1.19709 1.17152 0.92863 0.90195 0.85075 1.20918 1.01286 0.95472 0.96625 1.20657 1.00386 0.99391 0.93487 1.20723 1.01258 0.96507 0.98365 1.20703 1.00837 0.96094 0.96107 1.20832 0.98773 0.98183 0.92251 0.90334 0.94774 0.93724 0.90772 0.91952 0.91562 0.91718 0.90982 0.90485 0.91663 0.87400 0.87641 0.87798 0.87606 0.87687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 16 2 O -0.38 -6.91 10.41 -35.23 -0.37 -7.28 16 3 C 0.10 1.72 2.66 -25.07 -0.07 1.66 16 4 H 0.08 1.64 6.58 -51.93 -0.34 1.29 16 5 C -0.14 -2.05 6.62 -24.74 -0.16 -2.21 16 6 C -0.12 -1.73 6.83 -25.07 -0.17 -1.90 16 7 C -0.11 -1.79 4.72 -25.61 -0.12 -1.92 16 8 C -0.09 -1.78 2.18 -90.65 -0.20 -1.98 16 9 H 0.10 2.12 7.90 -51.93 -0.41 1.71 16 10 C 0.47 11.39 6.69 -10.98 -0.07 11.31 16 11 O -0.60 -15.56 15.01 5.56 0.08 -15.48 16 12 N -0.41 -10.18 2.64 -58.98 -0.16 -10.34 16 13 C -0.36 -8.82 8.35 -14.94 -0.12 -8.95 16 14 H 0.11 2.45 5.04 -52.49 -0.26 2.18 16 15 C 0.05 1.16 4.98 -17.49 -0.09 1.08 16 16 N -0.84 -21.94 10.93 55.49 0.61 -21.34 16 17 Si 0.91 19.22 29.60 -169.99 -5.03 14.18 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 21 C 0.24 5.95 2.60 -83.69 -0.22 5.73 16 22 C -0.12 -2.84 9.39 -39.37 -0.37 -3.21 16 23 C -0.12 -2.45 10.04 -39.61 -0.40 -2.84 16 24 C -0.15 -2.94 10.04 -39.53 -0.40 -3.34 16 25 C -0.12 -2.49 10.04 -39.61 -0.40 -2.89 16 26 C -0.08 -1.96 8.79 -39.37 -0.35 -2.31 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.14 7.62 -51.93 -0.40 0.74 16 35 H 0.08 1.43 7.20 -51.93 -0.37 1.06 16 36 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 37 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.10 2.65 8.06 -52.48 -0.42 2.22 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -29.17 334.62 -7.85 -37.02 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.99 Total: 8.36 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.04 Total: -10.17 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.45 Total: -31.67 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.28 Total: -22.76 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.17 -7.85 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348779903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.731 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds