Wall clock time and date at job start Tue Mar 31 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00004 * 2 1 4 4 H 1.09000 * 110.53888 * 332.60922 * 3 2 1 5 5 C 1.54890 * 110.48815 * 95.22285 * 3 2 1 6 6 C 1.54891 * 102.74871 * 156.62270 * 5 3 2 7 7 C 1.54269 * 104.19495 * 322.05637 * 6 5 3 8 8 C 1.53877 * 106.59783 * 23.61035 * 7 6 5 9 9 H 1.09006 * 110.03172 * 240.66446 * 8 7 6 10 10 C 1.50697 * 110.03111 * 119.28719 * 8 7 6 11 11 O 1.21279 * 120.00015 * 241.45718 * 10 8 7 12 12 N 1.34783 * 120.00244 * 61.45517 * 10 8 7 13 13 C 1.37138 * 119.99728 * 5.12136 * 12 10 8 14 14 H 1.08002 * 120.00297 * 342.58076 * 13 12 10 15 15 C 1.38888 * 119.99753 * 162.85748 * 13 12 10 16 16 N 1.31424 * 120.00237 * 339.81690 * 15 13 12 17 17 Si 1.86803 * 119.99932 * 159.82186 * 15 13 12 18 18 H 1.48490 * 109.47237 * 59.99770 * 17 15 13 19 19 H 1.48503 * 109.47170 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46828 * 299.99640 * 17 15 13 21 21 C 1.39785 * 120.00033 * 185.12689 * 12 10 8 22 22 C 1.38965 * 120.08000 * 111.35403 * 21 12 10 23 23 C 1.38081 * 119.91934 * 179.72233 * 22 21 12 24 24 C 1.38304 * 120.07998 * 0.57737 * 23 22 21 25 25 C 1.38312 * 120.15852 * 359.69933 * 24 23 22 26 26 C 1.38082 * 120.07221 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47639 * 300.00449 * 1 2 3 29 29 H 1.09003 * 109.47163 * 60.00333 * 1 2 3 30 30 H 1.08994 * 110.75416 * 38.30428 * 5 3 2 31 31 H 1.08999 * 110.91125 * 275.00452 * 5 3 2 32 32 H 1.08997 * 110.48693 * 203.38035 * 6 5 3 33 33 H 1.09000 * 110.48882 * 80.73046 * 6 5 3 34 34 H 1.09003 * 110.03212 * 264.32654 * 7 6 5 35 35 H 1.08997 * 110.03762 * 142.89725 * 7 6 5 36 36 H 0.97002 * 120.00287 * 185.07270 * 16 15 13 37 37 H 1.07991 * 120.03558 * 0.02734 * 22 21 12 38 38 H 1.08002 * 119.95715 * 180.30185 * 23 22 21 39 39 H 1.08004 * 119.92296 * 179.71837 * 24 23 22 40 40 H 1.07993 * 119.96386 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.03846 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3378 2.0234 -0.4696 5 6 2.3513 1.7470 1.4449 6 6 3.4599 2.8063 1.2258 7 6 4.2949 2.2439 0.0569 8 6 3.3731 1.2896 -0.7225 9 1 3.7881 0.2817 -0.7165 10 6 3.2111 1.7722 -2.1409 11 8 2.1131 2.0768 -2.5562 12 7 4.2865 1.8654 -2.9481 13 6 5.5098 1.4227 -2.5142 14 1 5.6844 1.2652 -1.4601 15 6 6.5261 1.1825 -3.4299 16 7 6.2366 0.9886 -4.6971 17 14 8.3045 1.1347 -2.8603 18 1 8.4716 0.0605 -1.8488 19 1 9.1891 0.8625 -4.0216 20 1 8.6665 2.4428 -2.2577 21 6 4.1549 2.4133 -4.2273 22 6 4.7382 3.6393 -4.5233 23 6 4.6110 4.1747 -5.7897 24 6 3.8939 3.4980 -6.7596 25 6 3.3070 2.2802 -6.4669 26 6 3.4359 1.7357 -5.2046 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.7297 0.9064 2.0265 31 1 1.4830 2.1916 1.9311 32 1 4.0747 2.9058 2.1204 33 1 3.0217 3.7666 0.9541 34 1 5.1568 1.6989 0.4419 35 1 4.6251 3.0560 -0.5908 36 1 6.9372 0.7482 -5.3235 37 1 5.2946 4.1703 -3.7652 38 1 5.0682 5.1252 -6.0218 39 1 3.7921 3.9213 -7.7480 40 1 2.7482 1.7543 -7.2267 41 1 2.9771 0.7849 -4.9765 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348779903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:59 Heat of formation + Delta-G solvation = -64.655265 kcal Electronic energy + Delta-G solvation = -23993.405636 eV Core-core repulsion = 20644.757491 eV Total energy + Delta-G solvation = -3348.648145 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53760 -39.89852 -38.55691 -36.76244 -36.56013 -33.57645 -31.59038 -31.29442 -29.52434 -29.09842 -27.05714 -26.77436 -23.91729 -23.21915 -21.99061 -21.64187 -20.62642 -19.50559 -18.31560 -17.50680 -17.12012 -16.67003 -16.50042 -16.29716 -15.83943 -15.76236 -15.50521 -14.86855 -14.81602 -14.48803 -14.17240 -14.10318 -13.47014 -13.38819 -13.26789 -12.89337 -12.81435 -12.70705 -12.34610 -12.22673 -12.18135 -12.09986 -11.99375 -11.79865 -11.50936 -11.49371 -11.16754 -10.45593 -10.37920 -10.09861 -9.58258 -9.18819 -8.16039 -5.91304 0.74251 0.78542 1.40796 1.46903 1.54823 1.93692 2.27239 2.69935 3.03434 3.05722 3.28309 3.59960 3.76796 4.03572 4.20683 4.26218 4.35122 4.37930 4.42948 4.46689 4.50219 4.58928 4.63325 4.74458 4.76734 4.77636 4.84618 4.87922 5.02945 5.10337 5.17230 5.19730 5.26418 5.33116 5.42052 5.51354 5.64935 5.76187 5.84285 6.00810 6.25489 6.32941 6.58415 7.10610 7.51912 7.94232 8.74322 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.006898 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.806233 B = 4058.177470 C = 5182.478720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.405 6.405 3 C 0.096 3.904 4 H 0.062 0.938 5 C -0.130 4.130 6 C -0.114 4.114 7 C -0.102 4.102 8 C -0.090 4.090 9 H 0.087 0.913 10 C 0.459 3.541 11 O -0.629 6.629 12 N -0.417 5.417 13 C -0.372 4.372 14 H 0.120 0.880 15 C 0.005 3.995 16 N -0.871 5.871 17 Si 0.980 3.020 18 H -0.263 1.263 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.211 3.789 22 C -0.145 4.145 23 C -0.115 4.115 24 C -0.144 4.144 25 C -0.119 4.119 26 C -0.113 4.113 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.269 0.731 37 H 0.104 0.896 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.133 0.867 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 3.383 6.984 8.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C 0.038 3.962 4 H 0.080 0.920 5 C -0.168 4.168 6 C -0.152 4.152 7 C -0.140 4.140 8 C -0.111 4.111 9 H 0.105 0.895 10 C 0.251 3.749 11 O -0.517 6.517 12 N -0.132 5.132 13 C -0.498 4.498 14 H 0.138 0.862 15 C -0.201 4.201 16 N -0.507 5.507 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.213 1.213 20 H -0.189 1.189 21 C 0.120 3.880 22 C -0.165 4.165 23 C -0.134 4.134 24 C -0.162 4.162 25 C -0.138 4.138 26 C -0.133 4.133 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.161 0.839 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.106 3.364 6.581 8.017 hybrid contribution 0.732 -0.430 -0.355 0.921 sum -2.373 2.934 6.226 7.280 Atomic orbital electron populations 1.22882 0.79977 1.03527 1.00189 1.87812 1.21225 1.28309 1.95094 1.22939 0.92936 0.84354 0.95967 0.92027 1.22894 0.99665 0.99488 0.94763 1.22307 0.96802 0.97860 0.98222 1.22027 0.97680 0.97762 0.96554 1.21655 0.97371 1.01259 0.90820 0.89483 1.20860 0.82950 0.81557 0.89566 1.90486 1.26459 1.56822 1.77885 1.41536 1.08798 1.51686 1.11144 1.20071 0.86846 1.47492 0.95357 0.86222 1.26082 1.03762 0.95187 0.95022 1.70073 1.34636 1.41878 1.04076 0.85185 0.77277 0.79413 0.77792 1.18726 1.21344 1.18897 1.17486 0.93918 0.91285 0.85318 1.21071 1.01994 0.95307 0.98131 1.21120 0.99459 1.00527 0.92265 1.21202 0.99456 0.95421 1.00078 1.21072 1.00569 0.96888 0.95241 1.20827 1.00460 0.97851 0.94173 0.88208 0.92118 0.95503 0.89682 0.89550 0.88314 0.91641 0.89646 0.92617 0.92115 0.87784 0.83920 0.83342 0.84893 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.85 113.37 1.23 2.09 16 2 O -0.41 -14.80 10.41 -148.98 -1.55 -16.35 16 3 C 0.10 3.47 2.66 31.67 0.08 3.55 16 4 H 0.06 2.48 6.58 -2.39 -0.02 2.47 16 5 C -0.13 -3.43 6.62 31.89 0.21 -3.21 16 6 C -0.11 -2.94 6.83 31.67 0.22 -2.73 16 7 C -0.10 -3.44 4.72 31.32 0.15 -3.29 16 8 C -0.09 -3.68 2.18 -10.82 -0.02 -3.71 16 9 H 0.09 3.77 7.90 -2.38 -0.02 3.76 16 10 C 0.46 23.26 6.69 87.66 0.59 23.85 16 11 O -0.63 -34.97 15.01 -3.03 -0.05 -35.02 16 12 N -0.42 -21.82 2.64 -458.89 -1.21 -23.04 16 13 C -0.37 -18.76 8.35 84.02 0.70 -18.06 16 14 H 0.12 5.54 5.04 -2.91 -0.01 5.52 16 15 C 0.00 0.23 4.98 84.91 0.42 0.66 16 16 N -0.87 -46.49 10.93 21.65 0.24 -46.26 16 17 Si 0.98 39.39 29.60 68.60 2.03 41.42 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 19 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 C 0.21 10.95 2.60 38.22 0.10 11.05 16 22 C -0.15 -6.80 9.39 22.41 0.21 -6.59 16 23 C -0.12 -4.49 10.04 22.25 0.22 -4.27 16 24 C -0.14 -5.30 10.04 22.30 0.22 -5.07 16 25 C -0.12 -4.98 10.04 22.25 0.22 -4.76 16 26 C -0.11 -5.76 8.79 22.41 0.20 -5.56 16 27 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 0.83 8.11 -2.39 -0.02 0.82 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 2.60 7.62 -2.39 -0.02 2.58 16 35 H 0.05 2.10 7.20 -2.39 -0.02 2.09 16 36 H 0.27 13.82 8.32 -92.71 -0.77 13.05 16 37 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 38 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 39 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.08 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -66.85 334.62 5.23 -61.62 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 1.01 Total: 33.67 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.75 Total: -16.06 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -0.98 Total: -69.29 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -1.60 Total: -51.37 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -66.85 5.23 -61.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348779903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.031 kcal (2) G-P(sol) polarization free energy of solvation -66.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds