Wall clock time and date at job start Tue Mar 31 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99549 * 2 1 4 4 H 1.08999 * 110.05503 * 330.04144 * 3 2 1 5 5 C 1.54273 * 110.02781 * 91.45877 * 3 2 1 6 6 C 1.54887 * 104.30973 * 142.82680 * 5 3 2 7 7 C 1.55031 * 102.68631 * 322.22482 * 6 5 3 8 8 C 1.53875 * 110.02894 * 208.62374 * 3 2 1 9 9 H 1.08994 * 110.03161 * 121.43639 * 8 3 2 10 10 C 1.50700 * 110.03445 * 0.02562 * 8 3 2 11 11 O 1.21278 * 120.00081 * 269.17745 * 10 8 3 12 12 N 1.34773 * 120.00110 * 89.17583 * 10 8 3 13 13 C 1.37139 * 119.99644 * 5.11347 * 12 10 8 14 14 H 1.07999 * 120.00231 * 331.28104 * 13 12 10 15 15 C 1.38897 * 119.99896 * 151.28333 * 13 12 10 16 16 N 1.31425 * 120.00141 * 158.27449 * 15 13 12 17 17 Si 1.86800 * 119.99631 * 338.27646 * 15 13 12 18 18 H 1.48501 * 109.47067 * 86.55863 * 17 15 13 19 19 H 1.48497 * 109.46943 * 206.55386 * 17 15 13 20 20 H 1.48500 * 109.47654 * 326.55733 * 17 15 13 21 21 C 1.39782 * 120.00142 * 185.11481 * 12 10 8 22 22 C 1.38966 * 120.07850 * 297.62096 * 21 12 10 23 23 C 1.38081 * 119.91932 * 179.79071 * 22 21 12 24 24 C 1.38304 * 120.08152 * 0.46529 * 23 22 21 25 25 C 1.38307 * 120.15276 * 359.79083 * 24 23 22 26 26 C 1.38079 * 120.08242 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47697 * 59.99802 * 1 2 3 28 28 H 1.08996 * 109.46714 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46886 * 299.99357 * 1 2 3 30 30 H 1.09003 * 110.48517 * 261.56961 * 5 3 2 31 31 H 1.08994 * 110.48731 * 24.08393 * 5 3 2 32 32 H 1.09000 * 110.75988 * 80.43742 * 6 5 3 33 33 H 1.08999 * 110.75396 * 203.80705 * 6 5 3 34 34 H 1.08996 * 110.36649 * 279.10421 * 7 6 5 35 35 H 1.09001 * 110.63723 * 156.57076 * 7 6 5 36 36 H 0.96997 * 119.99555 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.03817 * 359.97438 * 22 21 12 38 38 H 1.08005 * 119.95647 * 180.25270 * 23 22 21 39 39 H 1.07994 * 119.92563 * 179.76638 * 24 23 22 40 40 H 1.08008 * 119.95873 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.04278 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3518 2.0078 -0.5113 5 6 2.2588 1.7732 1.4490 6 6 3.5960 2.5513 1.3760 7 6 4.4192 1.7189 0.3597 8 6 3.3838 1.2710 -0.6926 9 1 3.3921 1.9565 -1.5399 10 6 3.6924 -0.1288 -1.1578 11 8 4.2893 -0.8924 -0.4288 12 7 3.3049 -0.5322 -2.3840 13 6 2.7238 0.3606 -3.2476 14 1 2.1614 1.1978 -2.8613 15 6 2.8585 0.1882 -4.6193 16 7 1.9949 0.7439 -5.4394 17 14 4.2671 -0.8338 -5.2982 18 1 3.8686 -2.2638 -5.3344 19 1 4.5932 -0.3759 -6.6726 20 1 5.4593 -0.6741 -4.4273 21 6 3.4953 -1.8605 -2.7754 22 6 4.7798 -2.3840 -2.8611 23 6 4.9638 -3.6979 -3.2439 24 6 3.8724 -4.4898 -3.5512 25 6 2.5930 -3.9705 -3.4721 26 6 2.4011 -2.6590 -3.0853 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.4537 2.4285 1.7817 31 1 2.3520 0.9161 2.1158 32 1 3.4345 3.5631 1.0041 33 1 4.0856 2.5701 2.3497 34 1 4.8636 0.8530 0.8503 35 1 5.1922 2.3327 -0.1028 36 1 2.0893 0.6237 -6.3973 37 1 5.6328 -1.7649 -2.6257 38 1 5.9616 -4.1066 -3.3068 39 1 4.0195 -5.5160 -3.8540 40 1 1.7429 -4.5917 -3.7132 41 1 1.4017 -2.2540 -3.0242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348779904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:02 Heat of formation + Delta-G solvation = -40.082391 kcal Electronic energy + Delta-G solvation = -24476.445838 eV Core-core repulsion = 21128.863253 eV Total energy + Delta-G solvation = -3347.582585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.01888 -38.64608 -37.06431 -35.38997 -34.68341 -32.03091 -30.25085 -29.82692 -28.17672 -27.85247 -25.67701 -24.93681 -22.58640 -21.87965 -20.52611 -20.37575 -18.65822 -17.78969 -16.94586 -15.92619 -15.71796 -15.29685 -15.13877 -14.79034 -14.46446 -14.14273 -13.73206 -13.54935 -13.31330 -12.99199 -12.82051 -12.63805 -12.44045 -12.11948 -11.95219 -11.23091 -11.07403 -10.99412 -10.87028 -10.81886 -10.77090 -10.59603 -10.52317 -10.26328 -10.20019 -9.85382 -9.24509 -9.10073 -8.67138 -8.33592 -8.16094 -7.54870 -6.50835 -4.05277 2.01271 2.10468 3.22685 3.34157 3.39115 3.69974 4.17387 4.22026 4.36777 4.50042 4.88525 4.90246 5.12667 5.29770 5.52309 5.53325 5.60925 5.67322 5.71081 5.74770 5.84345 5.90159 5.94043 6.00515 6.02586 6.11063 6.13267 6.15826 6.26674 6.29181 6.44230 6.49853 6.51298 6.70701 6.79059 7.01381 7.15100 7.25907 7.37557 7.67765 7.69511 7.99783 8.30140 8.91008 9.33003 9.66961 10.57668 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.007149 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.736686 B = 3915.695549 C = 4199.236466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.103 3.897 4 H 0.067 0.933 5 C -0.145 4.145 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.101 4.101 9 H 0.108 0.892 10 C 0.515 3.485 11 O -0.576 6.576 12 N -0.423 5.423 13 C -0.344 4.344 14 H 0.109 0.891 15 C 0.075 3.925 16 N -0.857 5.857 17 Si 0.859 3.141 18 H -0.255 1.255 19 H -0.294 1.294 20 H -0.260 1.260 21 C 0.167 3.833 22 C -0.128 4.128 23 C -0.118 4.118 24 C -0.144 4.144 25 C -0.116 4.116 26 C -0.111 4.111 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.275 0.725 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 -0.236 7.001 7.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.285 6.285 3 C 0.045 3.955 4 H 0.085 0.915 5 C -0.183 4.183 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.122 4.122 9 H 0.126 0.874 10 C 0.306 3.694 11 O -0.458 6.458 12 N -0.138 5.138 13 C -0.469 4.469 14 H 0.127 0.873 15 C -0.133 4.133 16 N -0.491 5.491 17 Si 0.685 3.315 18 H -0.180 1.180 19 H -0.222 1.222 20 H -0.185 1.185 21 C 0.075 3.925 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.163 4.163 25 C -0.135 4.135 26 C -0.131 4.131 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.126 -0.692 7.171 7.205 hybrid contribution 0.251 -0.092 -0.768 0.813 sum 0.125 -0.783 6.403 6.452 Atomic orbital electron populations 1.22693 0.81969 1.02219 0.99328 1.88078 1.18836 1.26874 1.94721 1.22600 0.93546 0.85020 0.94351 0.91534 1.22897 0.97563 1.00192 0.97631 1.22407 0.95572 0.98441 0.99268 1.22384 0.96865 1.00213 0.95658 1.21900 0.94410 0.96813 0.99062 0.87422 1.19877 0.78994 0.88565 0.81969 1.90529 1.43497 1.55892 1.55873 1.41394 1.54068 1.04867 1.13481 1.19065 1.32943 1.08183 0.86731 0.87331 1.25178 0.96329 0.96001 0.95829 1.69767 1.32244 1.42965 1.04168 0.87184 0.84203 0.82053 0.78049 1.17957 1.22199 1.18493 1.17656 0.92495 0.85714 0.96680 1.21207 0.96641 0.96085 1.00890 1.20827 0.98411 0.93719 1.00750 1.20896 0.92902 0.99270 1.03231 1.20884 0.96774 0.95185 1.00645 1.21156 0.98831 0.92923 1.00191 0.93791 0.90296 0.94972 0.91948 0.90547 0.91577 0.91523 0.89649 0.91601 0.91440 0.86405 0.86723 0.86928 0.86607 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.85 101.05 1.10 1.64 16 2 O -0.37 -7.21 8.81 -35.23 -0.31 -7.52 16 3 C 0.10 1.81 3.31 -25.61 -0.08 1.73 16 4 H 0.07 1.09 7.82 -51.93 -0.41 0.69 16 5 C -0.15 -2.09 6.55 -25.07 -0.16 -2.25 16 6 C -0.12 -1.59 6.92 -24.66 -0.17 -1.76 16 7 C -0.11 -1.88 6.31 -24.99 -0.16 -2.04 16 8 C -0.10 -1.96 2.46 -90.65 -0.22 -2.19 16 9 H 0.11 2.12 6.62 -51.93 -0.34 1.78 16 10 C 0.52 12.21 5.29 -10.99 -0.06 12.15 16 11 O -0.58 -14.81 14.99 5.56 0.08 -14.73 16 12 N -0.42 -10.46 2.47 -58.98 -0.15 -10.61 16 13 C -0.34 -8.87 8.83 -14.93 -0.13 -9.01 16 14 H 0.11 2.85 6.73 -52.49 -0.35 2.49 16 15 C 0.07 1.98 5.23 -17.48 -0.09 1.89 16 16 N -0.86 -23.49 13.96 55.49 0.77 -22.71 16 17 Si 0.86 21.13 23.53 -169.99 -4.00 17.13 16 18 H -0.26 -6.22 5.69 56.52 0.32 -5.90 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 20 H -0.26 -6.43 6.03 56.52 0.34 -6.09 16 21 C 0.17 4.03 2.37 -83.69 -0.20 3.83 16 22 C -0.13 -2.93 5.61 -39.37 -0.22 -3.15 16 23 C -0.12 -2.32 9.58 -39.61 -0.38 -2.70 16 24 C -0.14 -2.63 9.85 -39.53 -0.39 -3.02 16 25 C -0.12 -2.23 9.79 -39.61 -0.39 -2.62 16 26 C -0.11 -2.49 8.69 -39.37 -0.34 -2.83 16 27 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.03 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.59 6.83 -51.93 -0.35 1.23 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.12 2.75 7.61 -52.49 -0.40 2.35 16 38 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16 41 H 0.13 2.81 8.06 -52.49 -0.42 2.38 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -30.70 325.41 -6.80 -37.50 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.20 Total: 6.35 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.90 Total: -10.32 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.63 Total: -33.32 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.23 Total: -22.25 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.00 Total: 17.13 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.70 -6.80 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348779904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.580 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds