Wall clock time and date at job start Tue Mar 31 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99549 * 2 1 4 4 H 1.08999 * 110.05503 * 330.04144 * 3 2 1 5 5 C 1.54273 * 110.02781 * 91.45877 * 3 2 1 6 6 C 1.54887 * 104.30973 * 142.82680 * 5 3 2 7 7 C 1.55031 * 102.68631 * 322.22482 * 6 5 3 8 8 C 1.53875 * 110.02894 * 208.62374 * 3 2 1 9 9 H 1.08994 * 110.03161 * 121.43639 * 8 3 2 10 10 C 1.50700 * 110.03445 * 0.02562 * 8 3 2 11 11 O 1.21278 * 120.00081 * 269.17745 * 10 8 3 12 12 N 1.34773 * 120.00110 * 89.17583 * 10 8 3 13 13 C 1.37139 * 119.99644 * 5.11347 * 12 10 8 14 14 H 1.07999 * 120.00231 * 331.28104 * 13 12 10 15 15 C 1.38897 * 119.99896 * 151.28333 * 13 12 10 16 16 N 1.31425 * 120.00141 * 158.27449 * 15 13 12 17 17 Si 1.86800 * 119.99631 * 338.27646 * 15 13 12 18 18 H 1.48501 * 109.47067 * 86.55863 * 17 15 13 19 19 H 1.48497 * 109.46943 * 206.55386 * 17 15 13 20 20 H 1.48500 * 109.47654 * 326.55733 * 17 15 13 21 21 C 1.39782 * 120.00142 * 185.11481 * 12 10 8 22 22 C 1.38966 * 120.07850 * 297.62096 * 21 12 10 23 23 C 1.38081 * 119.91932 * 179.79071 * 22 21 12 24 24 C 1.38304 * 120.08152 * 0.46529 * 23 22 21 25 25 C 1.38307 * 120.15276 * 359.79083 * 24 23 22 26 26 C 1.38079 * 120.08242 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47697 * 59.99802 * 1 2 3 28 28 H 1.08996 * 109.46714 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46886 * 299.99357 * 1 2 3 30 30 H 1.09003 * 110.48517 * 261.56961 * 5 3 2 31 31 H 1.08994 * 110.48731 * 24.08393 * 5 3 2 32 32 H 1.09000 * 110.75988 * 80.43742 * 6 5 3 33 33 H 1.08999 * 110.75396 * 203.80705 * 6 5 3 34 34 H 1.08996 * 110.36649 * 279.10421 * 7 6 5 35 35 H 1.09001 * 110.63723 * 156.57076 * 7 6 5 36 36 H 0.96997 * 119.99555 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.03817 * 359.97438 * 22 21 12 38 38 H 1.08005 * 119.95647 * 180.25270 * 23 22 21 39 39 H 1.07994 * 119.92563 * 179.76638 * 24 23 22 40 40 H 1.08008 * 119.95873 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.04278 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3518 2.0078 -0.5113 5 6 2.2588 1.7732 1.4490 6 6 3.5960 2.5513 1.3760 7 6 4.4192 1.7189 0.3597 8 6 3.3838 1.2710 -0.6926 9 1 3.3921 1.9565 -1.5399 10 6 3.6924 -0.1288 -1.1578 11 8 4.2893 -0.8924 -0.4288 12 7 3.3049 -0.5322 -2.3840 13 6 2.7238 0.3606 -3.2476 14 1 2.1614 1.1978 -2.8613 15 6 2.8585 0.1882 -4.6193 16 7 1.9949 0.7439 -5.4394 17 14 4.2671 -0.8338 -5.2982 18 1 3.8686 -2.2638 -5.3344 19 1 4.5932 -0.3759 -6.6726 20 1 5.4593 -0.6741 -4.4273 21 6 3.4953 -1.8605 -2.7754 22 6 4.7798 -2.3840 -2.8611 23 6 4.9638 -3.6979 -3.2439 24 6 3.8724 -4.4898 -3.5512 25 6 2.5930 -3.9705 -3.4721 26 6 2.4011 -2.6590 -3.0853 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.4537 2.4285 1.7817 31 1 2.3520 0.9161 2.1158 32 1 3.4345 3.5631 1.0041 33 1 4.0856 2.5701 2.3497 34 1 4.8636 0.8530 0.8503 35 1 5.1922 2.3327 -0.1028 36 1 2.0893 0.6237 -6.3973 37 1 5.6328 -1.7649 -2.6257 38 1 5.9616 -4.1066 -3.3068 39 1 4.0195 -5.5160 -3.8540 40 1 1.7429 -4.5917 -3.7132 41 1 1.4017 -2.2540 -3.0242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348779904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:01 Heat of formation + Delta-G solvation = -58.805058 kcal Electronic energy + Delta-G solvation = -24477.257714 eV Core-core repulsion = 21128.863253 eV Total energy + Delta-G solvation = -3348.394461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72100 -40.13539 -38.68071 -36.87893 -36.42885 -34.02877 -31.86377 -31.38732 -29.65329 -29.13315 -27.00981 -26.88437 -24.18357 -23.50202 -21.99355 -21.67418 -20.48520 -19.48595 -18.52104 -17.56452 -17.39445 -16.98645 -16.67593 -16.33054 -15.94425 -15.67896 -15.34454 -15.04348 -14.82800 -14.60090 -14.54414 -14.32499 -14.13160 -13.84323 -13.34284 -12.86374 -12.70643 -12.45827 -12.39709 -12.30569 -12.24361 -12.12731 -11.94362 -11.83983 -11.62590 -11.42763 -11.17361 -10.49998 -10.44045 -10.22579 -9.80445 -9.31990 -8.55639 -6.09624 0.38788 0.47135 1.25481 1.33583 1.40492 1.88886 2.22267 2.54282 2.80292 2.94616 3.09822 3.63129 3.69632 3.99542 4.03236 4.09168 4.25094 4.28088 4.38298 4.46737 4.49545 4.55446 4.58115 4.61993 4.67748 4.69748 4.78846 4.80160 4.84897 5.02138 5.09828 5.10687 5.17670 5.24492 5.36926 5.48684 5.52350 5.56591 5.65963 5.97524 6.02984 6.37414 6.39687 6.92186 7.39760 7.79099 8.55858 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.007149 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.736686 B = 3915.695549 C = 4199.236466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.404 6.404 3 C 0.099 3.901 4 H 0.073 0.927 5 C -0.136 4.136 6 C -0.107 4.107 7 C -0.112 4.112 8 C -0.107 4.107 9 H 0.097 0.903 10 C 0.509 3.491 11 O -0.604 6.604 12 N -0.433 5.433 13 C -0.335 4.335 14 H 0.096 0.904 15 C 0.043 3.957 16 N -0.889 5.889 17 Si 0.904 3.096 18 H -0.249 1.249 19 H -0.297 1.297 20 H -0.270 1.270 21 C 0.133 3.867 22 C -0.152 4.152 23 C -0.118 4.118 24 C -0.132 4.132 25 C -0.112 4.112 26 C -0.135 4.135 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.278 0.722 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.153 0.847 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 -1.302 7.619 7.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.323 6.323 3 C 0.041 3.959 4 H 0.091 0.909 5 C -0.174 4.174 6 C -0.144 4.144 7 C -0.150 4.150 8 C -0.128 4.128 9 H 0.116 0.884 10 C 0.302 3.698 11 O -0.488 6.488 12 N -0.149 5.149 13 C -0.461 4.461 14 H 0.113 0.887 15 C -0.162 4.162 16 N -0.525 5.525 17 Si 0.730 3.270 18 H -0.173 1.173 19 H -0.224 1.224 20 H -0.196 1.196 21 C 0.042 3.958 22 C -0.172 4.172 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.130 4.130 26 C -0.154 4.154 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.171 0.829 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.056 -1.766 7.790 7.987 hybrid contribution 0.224 0.121 -0.915 0.950 sum 0.168 -1.645 6.874 7.070 Atomic orbital electron populations 1.22817 0.80226 1.02896 1.00383 1.88022 1.20936 1.28273 1.95049 1.22765 0.92205 0.84567 0.96373 0.90893 1.22853 0.99285 1.00357 0.94920 1.22417 0.94160 0.98574 0.99284 1.22383 0.96873 1.00062 0.95703 1.22051 0.97041 0.93926 0.99824 0.88443 1.20571 0.78051 0.89945 0.81281 1.90485 1.44751 1.57214 1.56357 1.41494 1.54358 1.05410 1.13627 1.18971 1.32016 1.08137 0.86942 0.88683 1.25554 0.97507 0.97023 0.96088 1.69811 1.33429 1.44872 1.04426 0.86469 0.82117 0.81481 0.76887 1.17316 1.22439 1.19555 1.17994 0.93607 0.85827 0.98416 1.21267 0.95563 0.97745 1.02672 1.21310 1.00902 0.92358 0.99105 1.21470 0.91687 1.01166 1.00708 1.21368 0.98904 0.94006 0.98742 1.21266 0.97813 0.94607 1.01755 0.94523 0.89928 0.91976 0.88831 0.91763 0.89327 0.89312 0.92042 0.90466 0.91230 0.88254 0.83244 0.82035 0.82901 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 10.85 113.37 1.23 2.25 16 2 O -0.40 -16.12 8.81 -148.98 -1.31 -17.43 16 3 C 0.10 3.46 3.31 31.32 0.10 3.57 16 4 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 5 C -0.14 -3.67 6.55 31.67 0.21 -3.46 16 6 C -0.11 -2.59 6.92 31.93 0.22 -2.37 16 7 C -0.11 -3.71 6.31 31.72 0.20 -3.51 16 8 C -0.11 -4.28 2.46 -10.81 -0.03 -4.31 16 9 H 0.10 4.01 6.62 -2.39 -0.02 3.99 16 10 C 0.51 25.06 5.29 87.66 0.46 25.53 16 11 O -0.60 -32.30 14.99 -3.02 -0.05 -32.34 16 12 N -0.43 -22.19 2.47 -458.90 -1.13 -23.33 16 13 C -0.33 -17.92 8.83 84.02 0.74 -17.18 16 14 H 0.10 5.23 6.73 -2.91 -0.02 5.21 16 15 C 0.04 2.35 5.23 84.91 0.44 2.79 16 16 N -0.89 -49.82 13.96 21.65 0.30 -49.51 16 17 Si 0.90 44.38 23.53 68.60 1.61 45.99 16 18 H -0.25 -11.79 5.69 99.48 0.57 -11.22 16 19 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.27 -13.53 6.03 99.48 0.60 -12.93 16 21 C 0.13 6.52 2.37 38.22 0.09 6.61 16 22 C -0.15 -6.96 5.61 22.41 0.13 -6.83 16 23 C -0.12 -4.33 9.58 22.25 0.21 -4.12 16 24 C -0.13 -4.28 9.85 22.30 0.22 -4.06 16 25 C -0.11 -3.99 9.79 22.25 0.22 -3.77 16 26 C -0.13 -6.02 8.69 22.41 0.19 -5.82 16 27 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.89 8.08 -2.39 -0.02 1.88 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.33 6.83 -2.39 -0.02 2.31 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.28 14.73 8.31 -92.71 -0.77 13.95 16 37 H 0.10 4.78 7.61 -2.91 -0.02 4.76 16 38 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 40 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 41 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -69.41 325.41 4.83 -64.58 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.76 Total: 26.73 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 4.65 Total: -14.68 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -0.83 Total: -72.84 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -1.36 Total: -49.78 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.61 Total: 45.99 kcal Total: -69.41 4.83 -64.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348779904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.775 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds