Wall clock time and date at job start Tue Mar 31 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99532 * 2 1 4 4 H 1.08996 * 110.05931 * 28.58472 * 3 2 1 5 5 C 1.54271 * 110.03009 * 267.16731 * 3 2 1 6 6 C 1.54893 * 104.19280 * 217.10499 * 5 3 2 7 7 C 1.54885 * 102.74751 * 37.94703 * 6 5 3 8 8 C 1.53875 * 110.03166 * 150.00388 * 3 2 1 9 9 H 1.08997 * 110.03060 * 238.61915 * 8 3 2 10 10 C 1.50707 * 110.03155 * 359.97438 * 8 3 2 11 11 O 1.21276 * 119.99761 * 85.78165 * 10 8 3 12 12 N 1.34772 * 120.00029 * 265.78372 * 10 8 3 13 13 C 1.37144 * 120.00066 * 4.91821 * 12 10 8 14 14 H 1.08003 * 119.99497 * 336.07229 * 13 12 10 15 15 C 1.38891 * 119.99899 * 156.06740 * 13 12 10 16 16 N 1.31414 * 120.00312 * 357.17375 * 15 13 12 17 17 Si 1.86804 * 119.99778 * 177.17299 * 15 13 12 18 18 H 1.48505 * 109.47081 * 60.00236 * 17 15 13 19 19 H 1.48498 * 109.47049 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47311 * 300.00315 * 17 15 13 21 21 C 1.39788 * 120.00182 * 184.92176 * 12 10 8 22 22 C 1.38960 * 120.07736 * 105.07979 * 21 12 10 23 23 C 1.38087 * 119.91680 * 179.74949 * 22 21 12 24 24 C 1.38307 * 120.08139 * 0.54896 * 23 22 21 25 25 C 1.38316 * 120.15293 * 359.70105 * 24 23 22 26 26 C 1.38078 * 120.07907 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46807 * 299.99328 * 1 2 3 28 28 H 1.08998 * 109.47702 * 59.99995 * 1 2 3 29 29 H 1.09000 * 109.46567 * 180.02562 * 1 2 3 30 30 H 1.08992 * 110.48979 * 335.78834 * 5 3 2 31 31 H 1.09008 * 110.48446 * 98.43034 * 5 3 2 32 32 H 1.08996 * 110.75617 * 279.62547 * 6 5 3 33 33 H 1.09005 * 110.90866 * 156.33607 * 6 5 3 34 34 H 1.09000 * 110.48744 * 203.37360 * 7 6 5 35 35 H 1.08999 * 110.48793 * 80.73128 * 7 6 5 36 36 H 0.96996 * 120.00227 * 185.00975 * 16 15 13 37 37 H 1.07994 * 120.04205 * 359.97438 * 22 21 12 38 38 H 1.08001 * 119.96121 * 180.25159 * 23 22 21 39 39 H 1.07994 * 119.92385 * 179.72695 * 24 23 22 40 40 H 1.08000 * 119.95524 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.03754 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0127 0.4899 5 6 2.2905 1.7591 -1.4476 6 6 3.6252 2.5390 -1.3495 7 6 4.4265 1.7157 -0.3109 8 6 3.3683 1.2779 0.7227 9 1 3.3578 1.9710 1.5639 10 6 3.6665 -0.1173 1.2082 11 8 4.1978 -0.9167 0.4669 12 7 3.3426 -0.4767 2.4661 13 6 2.6519 0.3924 3.2713 14 1 2.6962 1.4549 3.0822 15 6 1.8953 -0.0936 4.3298 16 7 1.7963 -1.3892 4.5263 17 14 1.0184 1.0943 5.4741 18 1 0.0579 1.9153 4.6938 19 1 0.2853 0.3293 6.5145 20 1 2.0153 1.9827 6.1238 21 6 3.7109 -1.7353 2.9502 22 6 4.7628 -1.8549 3.8503 23 6 5.1204 -3.0992 4.3304 24 6 4.4403 -4.2270 3.9078 25 6 3.3961 -4.1122 3.0080 26 6 3.0295 -2.8705 2.5281 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 2.4005 0.8956 -2.1035 31 1 1.4930 2.4111 -1.8043 32 1 3.4542 3.5535 -0.9896 33 1 4.1389 2.5533 -2.3108 34 1 5.1880 2.3359 0.1621 35 1 4.8815 0.8451 -0.7831 36 1 1.2106 -1.7313 5.2197 37 1 5.2977 -0.9753 4.1767 38 1 5.9353 -3.1925 5.0330 39 1 4.7250 -5.1994 4.2815 40 1 2.8675 -4.9950 2.6798 41 1 2.2137 -2.7816 1.8259 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348779905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:04 Heat of formation + Delta-G solvation = -43.670691 kcal Electronic energy + Delta-G solvation = -24411.506001 eV Core-core repulsion = 21063.767815 eV Total energy + Delta-G solvation = -3347.738185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69041 -38.25820 -36.74266 -35.26655 -34.51179 -31.53422 -29.73534 -29.59012 -27.95755 -27.77674 -25.57421 -24.84787 -22.28240 -21.37566 -20.45080 -20.16595 -18.82360 -17.49022 -16.90327 -15.69215 -15.35061 -15.15914 -14.72001 -14.58862 -14.32717 -14.02148 -13.92988 -13.38193 -13.07204 -12.77451 -12.55451 -12.27233 -12.04235 -11.55231 -11.34592 -11.22901 -11.13543 -11.01547 -10.86516 -10.77996 -10.72366 -10.51210 -10.36995 -10.25350 -10.09252 -9.96236 -9.26150 -8.98711 -8.41190 -7.97285 -7.71320 -7.40638 -6.10135 -3.96057 2.61359 2.66715 3.11244 3.18418 3.20008 3.86584 4.10059 4.31875 4.72192 4.94287 4.95671 5.03279 5.23723 5.34712 5.57308 5.73821 5.81502 5.90679 5.90834 5.94971 5.98827 6.01575 6.03963 6.10463 6.14795 6.15818 6.24626 6.39687 6.43745 6.54228 6.58407 6.71292 6.81157 6.98736 7.19671 7.39904 7.48793 7.59889 7.78840 7.81662 7.95281 8.12669 8.56774 9.10923 9.51449 9.95174 10.74163 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.007776 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.143517 B = 3599.853137 C = 4499.317605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.108 3.892 4 H 0.063 0.937 5 C -0.145 4.145 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.099 4.099 9 H 0.096 0.904 10 C 0.504 3.496 11 O -0.585 6.585 12 N -0.418 5.418 13 C -0.341 4.341 14 H 0.095 0.905 15 C 0.044 3.956 16 N -0.855 5.855 17 Si 0.916 3.084 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.251 3.749 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.151 4.151 25 C -0.123 4.123 26 C -0.067 4.067 27 H 0.041 0.959 28 H 0.029 0.971 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.270 0.730 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 4.597 -4.899 6.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.049 3.951 4 H 0.081 0.919 5 C -0.183 4.183 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.121 4.121 9 H 0.114 0.886 10 C 0.293 3.707 11 O -0.469 6.469 12 N -0.134 5.134 13 C -0.468 4.468 14 H 0.113 0.887 15 C -0.162 4.162 16 N -0.491 5.491 17 Si 0.743 3.257 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.199 1.199 21 C 0.160 3.840 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.170 4.170 25 C -0.142 4.142 26 C -0.086 4.086 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.271 3.899 -5.054 6.389 hybrid contribution -1.082 0.874 1.016 1.723 sum -1.353 4.774 -4.037 6.397 Atomic orbital electron populations 1.22659 0.82259 1.02153 0.98939 1.88119 1.18496 1.26523 1.94604 1.22515 0.93522 0.85162 0.93936 0.91880 1.22906 0.97357 1.00199 0.97848 1.22380 0.95792 0.98321 0.99199 1.22356 0.96814 1.00224 0.95744 1.21884 0.94593 0.97126 0.98459 0.88588 1.19625 0.81207 0.89020 0.80798 1.90525 1.48255 1.53326 1.54773 1.41163 1.49139 1.12614 1.10499 1.19426 1.27156 0.89745 1.10429 0.88715 1.25265 0.96824 0.96154 0.97989 1.69854 1.35915 1.11011 1.32309 0.86180 0.79528 0.79980 0.80039 1.20059 1.20875 1.19919 1.17092 0.90407 0.85055 0.91469 1.20925 0.97897 0.96604 0.99403 1.20604 1.00145 0.92722 1.00598 1.20670 0.98533 0.97213 1.00574 1.20668 0.98080 0.96515 0.98957 1.20804 0.97278 0.91798 0.98720 0.94046 0.95228 0.90369 0.90461 0.92072 0.91768 0.91597 0.91852 0.89600 0.91892 0.87783 0.87917 0.88074 0.87938 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.85 101.05 1.10 1.71 16 2 O -0.36 -7.40 8.81 -35.24 -0.31 -7.71 16 3 C 0.11 1.92 3.36 -25.61 -0.09 1.84 16 4 H 0.06 1.04 7.81 -51.93 -0.41 0.64 16 5 C -0.15 -2.14 6.56 -25.07 -0.16 -2.31 16 6 C -0.12 -1.60 6.91 -24.74 -0.17 -1.77 16 7 C -0.11 -1.89 6.31 -25.08 -0.16 -2.05 16 8 C -0.10 -1.94 2.68 -90.65 -0.24 -2.19 16 9 H 0.10 1.82 6.08 -51.93 -0.32 1.50 16 10 C 0.50 12.27 5.30 -10.98 -0.06 12.21 16 11 O -0.59 -15.78 15.56 5.56 0.09 -15.69 16 12 N -0.42 -10.64 2.66 -58.97 -0.16 -10.80 16 13 C -0.34 -8.50 9.07 -14.93 -0.14 -8.64 16 14 H 0.10 2.20 5.86 -52.48 -0.31 1.90 16 15 C 0.04 1.10 5.38 -17.49 -0.09 1.00 16 16 N -0.85 -22.44 10.25 55.49 0.57 -21.87 16 17 Si 0.92 19.42 29.56 -169.99 -5.02 14.40 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 C 0.25 6.43 2.39 -83.69 -0.20 6.23 16 22 C -0.13 -3.08 9.85 -39.37 -0.39 -3.46 16 23 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 24 C -0.15 -3.10 10.04 -39.53 -0.40 -3.49 16 25 C -0.12 -2.69 10.04 -39.61 -0.40 -3.09 16 26 C -0.07 -1.66 8.55 -39.37 -0.34 -2.00 16 27 H 0.04 0.69 8.10 -51.93 -0.42 0.26 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 31 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.63 6.90 -51.93 -0.36 1.27 16 36 H 0.27 6.89 8.32 -40.82 -0.34 6.55 16 37 H 0.10 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.10 2.72 8.06 -52.49 -0.42 2.29 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -30.19 335.75 -7.92 -38.11 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.01 Total: 7.49 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.13 Total: -8.99 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.41 Total: -32.67 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.22 Total: -23.41 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.19 -7.92 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348779905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.556 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds