Wall clock time and date at job start Tue Mar 31 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99532 * 2 1 4 4 H 1.08996 * 110.05931 * 28.58472 * 3 2 1 5 5 C 1.54271 * 110.03009 * 267.16731 * 3 2 1 6 6 C 1.54893 * 104.19280 * 217.10499 * 5 3 2 7 7 C 1.54885 * 102.74751 * 37.94703 * 6 5 3 8 8 C 1.53875 * 110.03166 * 150.00388 * 3 2 1 9 9 H 1.08997 * 110.03060 * 238.61915 * 8 3 2 10 10 C 1.50707 * 110.03155 * 359.97438 * 8 3 2 11 11 O 1.21276 * 119.99761 * 85.78165 * 10 8 3 12 12 N 1.34772 * 120.00029 * 265.78372 * 10 8 3 13 13 C 1.37144 * 120.00066 * 4.91821 * 12 10 8 14 14 H 1.08003 * 119.99497 * 336.07229 * 13 12 10 15 15 C 1.38891 * 119.99899 * 156.06740 * 13 12 10 16 16 N 1.31414 * 120.00312 * 357.17375 * 15 13 12 17 17 Si 1.86804 * 119.99778 * 177.17299 * 15 13 12 18 18 H 1.48505 * 109.47081 * 60.00236 * 17 15 13 19 19 H 1.48498 * 109.47049 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47311 * 300.00315 * 17 15 13 21 21 C 1.39788 * 120.00182 * 184.92176 * 12 10 8 22 22 C 1.38960 * 120.07736 * 105.07979 * 21 12 10 23 23 C 1.38087 * 119.91680 * 179.74949 * 22 21 12 24 24 C 1.38307 * 120.08139 * 0.54896 * 23 22 21 25 25 C 1.38316 * 120.15293 * 359.70105 * 24 23 22 26 26 C 1.38078 * 120.07907 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46807 * 299.99328 * 1 2 3 28 28 H 1.08998 * 109.47702 * 59.99995 * 1 2 3 29 29 H 1.09000 * 109.46567 * 180.02562 * 1 2 3 30 30 H 1.08992 * 110.48979 * 335.78834 * 5 3 2 31 31 H 1.09008 * 110.48446 * 98.43034 * 5 3 2 32 32 H 1.08996 * 110.75617 * 279.62547 * 6 5 3 33 33 H 1.09005 * 110.90866 * 156.33607 * 6 5 3 34 34 H 1.09000 * 110.48744 * 203.37360 * 7 6 5 35 35 H 1.08999 * 110.48793 * 80.73128 * 7 6 5 36 36 H 0.96996 * 120.00227 * 185.00975 * 16 15 13 37 37 H 1.07994 * 120.04205 * 359.97438 * 22 21 12 38 38 H 1.08001 * 119.96121 * 180.25159 * 23 22 21 39 39 H 1.07994 * 119.92385 * 179.72695 * 24 23 22 40 40 H 1.08000 * 119.95524 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.03754 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0127 0.4899 5 6 2.2905 1.7591 -1.4476 6 6 3.6252 2.5390 -1.3495 7 6 4.4265 1.7157 -0.3109 8 6 3.3683 1.2779 0.7227 9 1 3.3578 1.9710 1.5639 10 6 3.6665 -0.1173 1.2082 11 8 4.1978 -0.9167 0.4669 12 7 3.3426 -0.4767 2.4661 13 6 2.6519 0.3924 3.2713 14 1 2.6962 1.4549 3.0822 15 6 1.8953 -0.0936 4.3298 16 7 1.7963 -1.3892 4.5263 17 14 1.0184 1.0943 5.4741 18 1 0.0579 1.9153 4.6938 19 1 0.2853 0.3293 6.5145 20 1 2.0153 1.9827 6.1238 21 6 3.7109 -1.7353 2.9502 22 6 4.7628 -1.8549 3.8503 23 6 5.1204 -3.0992 4.3304 24 6 4.4403 -4.2270 3.9078 25 6 3.3961 -4.1122 3.0080 26 6 3.0295 -2.8705 2.5281 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 2.4005 0.8956 -2.1035 31 1 1.4930 2.4111 -1.8043 32 1 3.4542 3.5535 -0.9896 33 1 4.1389 2.5533 -2.3108 34 1 5.1880 2.3359 0.1621 35 1 4.8815 0.8451 -0.7831 36 1 1.2106 -1.7313 5.2197 37 1 5.2977 -0.9753 4.1767 38 1 5.9353 -3.1925 5.0330 39 1 4.7250 -5.1994 4.2815 40 1 2.8675 -4.9950 2.6798 41 1 2.2137 -2.7816 1.8259 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348779905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:04 Heat of formation + Delta-G solvation = -60.328979 kcal Electronic energy + Delta-G solvation = -24412.228358 eV Core-core repulsion = 21063.767815 eV Total energy + Delta-G solvation = -3348.460543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39297 -39.84160 -38.45261 -36.73712 -36.32329 -33.45245 -31.51000 -31.19849 -29.48779 -29.09744 -26.93845 -26.76134 -23.95261 -23.15895 -21.84585 -21.62106 -20.60480 -19.19896 -18.51595 -17.29615 -17.03767 -16.75256 -16.47812 -16.07493 -16.02173 -15.68470 -15.32108 -14.90568 -14.57645 -14.45473 -14.29129 -14.04660 -13.39190 -13.30643 -13.09560 -12.92487 -12.76971 -12.38632 -12.27966 -12.22078 -12.18266 -12.03829 -11.91510 -11.89430 -11.52976 -11.42007 -11.10804 -10.37270 -10.29347 -9.85862 -9.50760 -9.24073 -7.98114 -5.90945 0.82826 0.89268 1.42754 1.45765 1.53494 2.06826 2.32774 2.86106 3.10281 3.15151 3.33275 3.67249 3.77096 4.10287 4.27561 4.31407 4.32160 4.43438 4.45916 4.50408 4.52334 4.59086 4.63202 4.72118 4.80900 4.82165 4.86734 4.94458 5.04673 5.11204 5.18237 5.22619 5.29103 5.41096 5.47548 5.53179 5.72986 5.83182 5.95459 6.13342 6.32089 6.46281 6.68659 7.19573 7.64280 8.07783 8.84332 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.007776 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.143517 B = 3599.853137 C = 4499.317605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.401 6.401 3 C 0.101 3.899 4 H 0.078 0.922 5 C -0.138 4.138 6 C -0.106 4.106 7 C -0.113 4.113 8 C -0.103 4.103 9 H 0.099 0.901 10 C 0.493 3.507 11 O -0.625 6.625 12 N -0.429 5.429 13 C -0.353 4.353 14 H 0.107 0.893 15 C 0.001 3.999 16 N -0.880 5.880 17 Si 0.981 3.019 18 H -0.263 1.263 19 H -0.289 1.289 20 H -0.267 1.267 21 C 0.226 3.774 22 C -0.155 4.155 23 C -0.117 4.117 24 C -0.147 4.147 25 C -0.124 4.124 26 C -0.095 4.095 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.264 0.736 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.129 0.871 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 5.923 -4.602 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.320 6.320 3 C 0.042 3.958 4 H 0.096 0.904 5 C -0.176 4.176 6 C -0.144 4.144 7 C -0.151 4.151 8 C -0.124 4.124 9 H 0.117 0.883 10 C 0.285 3.715 11 O -0.511 6.511 12 N -0.145 5.145 13 C -0.479 4.479 14 H 0.125 0.875 15 C -0.203 4.203 16 N -0.517 5.517 17 Si 0.805 3.195 18 H -0.188 1.188 19 H -0.215 1.215 20 H -0.192 1.192 21 C 0.135 3.865 22 C -0.175 4.175 23 C -0.136 4.136 24 C -0.165 4.165 25 C -0.143 4.143 26 C -0.115 4.115 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.147 0.853 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.405 5.245 -4.762 7.096 hybrid contribution -1.003 0.361 0.936 1.418 sum -1.408 5.606 -3.826 6.931 Atomic orbital electron populations 1.22756 0.80672 1.02375 1.00262 1.88074 1.20508 1.28480 1.94966 1.22759 0.92509 0.84522 0.95981 0.90439 1.22867 0.99278 1.00223 0.95218 1.22387 0.94246 0.98689 0.99031 1.22352 0.96858 0.99879 0.95992 1.22034 0.96930 0.93948 0.99501 0.88257 1.20474 0.80185 0.90666 0.80198 1.90474 1.49951 1.55043 1.55647 1.41448 1.49158 1.12808 1.11053 1.19798 1.27279 0.90347 1.10499 0.87523 1.26078 0.97399 0.97626 0.99162 1.70051 1.36347 1.12679 1.32612 0.85169 0.78498 0.77950 0.77840 1.18816 1.21506 1.19215 1.17412 0.91336 0.85425 0.92352 1.21102 0.98237 0.97963 1.00161 1.21051 1.00576 0.91748 1.00182 1.21133 0.97147 0.98964 0.99207 1.21035 0.98504 0.96155 0.98608 1.20746 0.97546 0.93470 0.99730 0.94478 0.91913 0.90874 0.92293 0.88787 0.88957 0.89659 0.90217 0.92674 0.92529 0.88259 0.84273 0.83679 0.85302 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 10.85 113.37 1.23 2.42 16 2 O -0.40 -16.94 8.81 -148.97 -1.31 -18.25 16 3 C 0.10 3.53 3.36 31.32 0.11 3.64 16 4 H 0.08 2.43 7.81 -2.39 -0.02 2.42 16 5 C -0.14 -3.79 6.56 31.67 0.21 -3.58 16 6 C -0.11 -2.55 6.91 31.89 0.22 -2.33 16 7 C -0.11 -3.71 6.31 31.67 0.20 -3.51 16 8 C -0.10 -4.06 2.68 -10.81 -0.03 -4.09 16 9 H 0.10 3.74 6.08 -2.39 -0.01 3.73 16 10 C 0.49 25.07 5.30 87.66 0.46 25.53 16 11 O -0.62 -35.64 15.56 -3.01 -0.05 -35.68 16 12 N -0.43 -22.72 2.66 -458.89 -1.22 -23.95 16 13 C -0.35 -17.96 9.07 84.02 0.76 -17.20 16 14 H 0.11 4.99 5.86 -2.91 -0.02 4.97 16 15 C 0.00 0.03 5.38 84.91 0.46 0.48 16 16 N -0.88 -47.32 10.25 21.65 0.22 -47.10 16 17 Si 0.98 39.77 29.56 68.60 2.03 41.80 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 21 C 0.23 12.03 2.39 38.22 0.09 12.12 16 22 C -0.15 -7.56 9.85 22.41 0.22 -7.34 16 23 C -0.12 -4.81 10.04 22.25 0.22 -4.58 16 24 C -0.15 -5.70 10.04 22.30 0.22 -5.47 16 25 C -0.12 -5.42 10.04 22.25 0.22 -5.20 16 26 C -0.10 -4.97 8.55 22.41 0.19 -4.78 16 27 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 1.83 8.08 -2.39 -0.02 1.82 16 31 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 2.16 6.90 -2.39 -0.02 2.14 16 36 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 37 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 41 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -69.34 335.75 5.47 -63.87 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 1.01 Total: 33.22 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.79 Total: -13.90 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.00 Total: -71.05 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -1.36 Total: -53.94 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -69.34 5.47 -63.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348779905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.544 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds