Wall clock time and date at job start Tue Mar 31 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99785 * 2 1 4 4 H 1.08995 * 110.88491 * 32.42759 * 3 2 1 5 5 C 1.55163 * 111.00276 * 268.54790 * 3 2 1 6 6 C 1.54327 * 102.93889 * 206.42641 * 5 3 2 7 7 N 1.47026 * 107.27232 * 22.19094 * 6 5 3 8 8 C 1.34769 * 125.64592 * 181.02680 * 7 6 5 9 9 O 1.21281 * 120.00096 * 180.02562 * 8 7 6 10 10 C 1.50707 * 120.00428 * 0.02562 * 8 7 6 11 11 H 1.09004 * 109.46724 * 300.00681 * 10 8 7 12 12 C 1.50702 * 109.46960 * 60.00162 * 10 8 7 13 13 H 1.07998 * 119.99619 * 31.49545 * 12 10 8 14 14 C 1.37881 * 119.99757 * 211.49717 * 12 10 8 15 15 N 1.31513 * 119.99514 * 188.23202 * 14 12 10 16 16 Si 1.86795 * 120.00173 * 8.22779 * 14 12 10 17 17 H 1.48494 * 109.47577 * 275.32817 * 16 14 12 18 18 H 1.48507 * 109.46951 * 155.32584 * 16 14 12 19 19 H 1.48499 * 109.47139 * 35.32893 * 16 14 12 20 20 C 1.50701 * 109.47324 * 180.02562 * 10 8 7 21 21 C 1.38235 * 119.99416 * 293.84425 * 20 10 8 22 22 C 1.38238 * 119.99277 * 179.74786 * 21 20 10 23 23 C 1.38240 * 120.00146 * 0.52540 * 22 21 20 24 24 C 1.38237 * 119.99676 * 359.74874 * 23 22 21 25 25 C 1.38228 * 119.99861 * 114.11681 * 20 10 8 26 26 C 1.47426 * 108.70233 * 1.28781 * 7 6 5 27 27 H 1.08999 * 109.47611 * 60.00017 * 1 2 3 28 28 H 1.09004 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47191 * 299.99423 * 1 2 3 30 30 H 1.08992 * 110.72121 * 88.06275 * 5 3 2 31 31 H 1.09001 * 110.72001 * 324.78393 * 5 3 2 32 32 H 1.09003 * 109.87789 * 262.77292 * 6 5 3 33 33 H 1.08994 * 109.88360 * 141.61060 * 6 5 3 34 34 H 0.96998 * 119.99608 * 179.97438 * 15 14 12 35 35 H 1.07988 * 120.00631 * 359.97438 * 21 20 10 36 36 H 1.08003 * 120.00077 * 180.29766 * 22 21 20 37 37 H 1.07995 * 119.99979 * 179.77347 * 23 22 21 38 38 H 1.08001 * 119.99359 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.00613 * 0.02562 * 25 20 10 40 40 H 1.09001 * 110.36366 * 94.48220 * 26 7 6 41 41 H 1.08999 * 110.36532 * 216.80476 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3830 2.0100 0.5461 5 6 2.2699 1.7986 -1.4481 6 6 3.4393 2.7900 -1.2710 7 7 4.1192 2.4432 -0.0144 8 6 5.1820 3.0871 0.5073 9 8 5.6641 2.7118 1.5549 10 6 5.7714 4.2735 -0.2112 11 1 6.1087 3.9677 -1.2016 12 6 4.7248 5.3493 -0.3470 13 1 3.9627 5.4599 0.4102 14 6 4.7402 6.1922 -1.4381 15 7 3.9322 7.2291 -1.4793 16 14 5.9085 5.8615 -2.8575 17 1 7.2367 6.4518 -2.5533 18 1 5.3670 6.4737 -4.0973 19 1 6.0507 4.3959 -3.0504 20 6 6.9413 4.8066 0.5752 21 6 6.7368 5.3743 1.8189 22 6 7.8105 5.8586 2.5424 23 6 9.0873 5.7850 2.0175 24 6 9.2909 5.2224 0.7714 25 6 8.2179 4.7330 0.0503 26 6 3.4496 1.2706 0.5773 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.3912 2.3059 -1.8461 31 1 2.5620 0.9687 -2.0915 32 1 3.0562 3.8090 -1.2163 33 1 4.1337 2.6972 -2.1060 34 1 3.9433 7.8223 -2.2466 35 1 5.7389 5.4362 2.2268 36 1 7.6515 6.2978 3.5162 37 1 9.9257 6.1667 2.5812 38 1 10.2884 5.1654 0.3612 39 1 8.3770 4.2938 -0.9235 40 1 3.9580 0.3534 0.2799 41 1 3.4244 1.3562 1.6636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635161753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:41 Heat of formation + Delta-G solvation = -51.029738 kcal Electronic energy + Delta-G solvation = -23452.295526 eV Core-core repulsion = 20104.238229 eV Total energy + Delta-G solvation = -3348.057298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.73963 -38.59700 -37.59923 -35.79269 -33.69243 -31.52940 -30.52702 -30.10417 -28.84621 -27.61439 -26.20291 -23.98739 -22.68578 -21.80497 -21.05604 -20.54486 -18.52606 -17.27405 -16.91889 -16.46168 -16.06448 -15.13594 -14.92518 -14.81846 -14.55816 -14.49073 -14.12927 -13.54266 -13.33589 -12.92395 -12.72091 -12.64888 -12.42498 -12.18158 -12.03582 -11.90708 -11.62192 -11.36519 -11.26926 -11.10775 -10.97443 -10.51733 -10.42927 -10.26820 -9.94766 -9.59901 -9.54679 -8.96818 -8.72836 -8.10889 -7.99633 -7.79948 -6.33711 -4.35286 2.17918 2.24463 3.13372 3.19381 3.24449 3.32651 3.58980 4.01329 4.19785 4.60719 4.72872 4.85806 4.98069 5.09762 5.26277 5.29333 5.45419 5.56186 5.57517 5.62594 5.69840 5.72792 5.84561 5.88768 5.96161 6.02759 6.14134 6.23792 6.31362 6.34921 6.48507 6.56871 6.75064 6.87604 6.92866 7.17217 7.19762 7.27325 7.28311 7.61519 7.82441 8.13253 8.24504 8.65448 9.03364 9.24610 10.77107 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.005808 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.529599 B = 4819.606644 C = 5880.943468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.074 3.926 4 H 0.080 0.920 5 C -0.156 4.156 6 C 0.105 3.895 7 N -0.612 5.612 8 C 0.552 3.448 9 O -0.558 6.558 10 C 0.027 3.973 11 H 0.068 0.932 12 C -0.507 4.507 13 H 0.082 0.918 14 C 0.088 3.912 15 N -0.880 5.880 16 Si 0.860 3.140 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.263 1.263 20 C -0.028 4.028 21 C -0.071 4.071 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.135 4.135 26 C 0.115 3.885 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.269 0.731 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 -8.576 -0.177 8.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.015 3.985 4 H 0.098 0.902 5 C -0.194 4.194 6 C -0.018 4.018 7 N -0.348 5.348 8 C 0.343 3.657 9 O -0.437 6.437 10 C 0.005 3.995 11 H 0.086 0.914 12 C -0.544 4.544 13 H 0.100 0.900 14 C -0.117 4.117 15 N -0.516 5.516 16 Si 0.686 3.314 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.029 4.029 21 C -0.089 4.089 22 C -0.148 4.148 23 C -0.161 4.161 24 C -0.147 4.147 25 C -0.153 4.153 26 C -0.009 4.009 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.886 -8.713 0.291 8.919 hybrid contribution 0.291 0.275 -0.998 1.075 sum -1.595 -8.438 -0.707 8.616 Atomic orbital electron populations 1.22766 0.80997 1.02515 1.00177 1.87855 1.19704 1.27250 1.94966 1.23346 0.94582 0.84430 0.96123 0.90240 1.23198 0.99215 0.99690 0.97324 1.22103 0.93079 1.00421 0.86181 1.48162 1.31661 1.30587 1.24375 1.20911 0.77554 0.82504 0.84717 1.90607 1.61359 1.67651 1.24059 1.18467 0.93474 0.92364 0.95146 0.91410 1.20445 1.11736 1.13241 1.09023 0.90001 1.24924 0.94781 0.94085 0.97887 1.69873 1.37708 1.13426 1.30544 0.87068 0.82527 0.79195 0.82591 1.19078 1.20954 1.18783 1.20040 0.93441 0.95249 0.94136 1.20835 0.98380 0.95705 0.93952 1.21032 0.93057 1.01086 0.99577 1.20862 0.96671 1.02224 0.96325 1.20872 0.97958 1.00474 0.95403 1.20955 0.92728 1.01933 0.99724 1.21928 0.90353 0.89795 0.98805 0.93916 0.89760 0.93955 0.90186 0.90269 0.88011 0.91937 0.92097 0.86503 0.87120 0.87327 0.87273 0.87497 0.91252 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.89 101.05 1.10 1.41 16 2 O -0.38 -4.99 10.51 -35.23 -0.37 -5.36 16 3 C 0.07 1.03 3.50 -24.46 -0.09 0.94 16 4 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 5 C -0.16 -2.12 6.68 -24.89 -0.17 -2.29 16 6 C 0.11 1.81 6.08 -3.06 -0.02 1.79 16 7 N -0.61 -11.80 3.32 -170.38 -0.57 -12.36 16 8 C 0.55 12.38 7.10 -10.99 -0.08 12.30 16 9 O -0.56 -13.67 15.68 5.56 0.09 -13.58 16 10 C 0.03 0.62 1.48 -94.07 -0.14 0.48 16 11 H 0.07 1.54 4.88 -51.93 -0.25 1.28 16 12 C -0.51 -12.72 5.96 -34.44 -0.21 -12.93 16 13 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 14 C 0.09 2.27 5.47 -17.82 -0.10 2.18 16 15 N -0.88 -24.24 13.96 55.43 0.77 -23.46 16 16 Si 0.86 19.52 27.32 -169.99 -4.64 14.88 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.26 -5.58 6.39 56.52 0.36 -5.22 16 20 C -0.03 -0.63 4.29 -104.63 -0.45 -1.08 16 21 C -0.07 -1.57 8.31 -39.58 -0.33 -1.90 16 22 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 23 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 24 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 25 C -0.14 -2.81 9.67 -39.59 -0.38 -3.19 16 26 C 0.11 1.89 6.65 -2.41 -0.02 1.87 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.37 8.11 -51.93 -0.42 -0.05 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.98 6.59 -51.93 -0.34 1.64 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.12 2.68 7.89 -52.49 -0.41 2.27 16 36 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.11 2.05 7.95 -52.48 -0.42 1.64 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.33 8.03 -51.93 -0.42 0.92 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -29.69 338.36 -7.76 -37.45 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.08 Total: 6.35 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.06 Total: -9.01 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.21 Total: -35.83 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.28 Total: -18.94 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.64 Total: 14.88 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.69 -7.76 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635161753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.577 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds