Wall clock time and date at job start Tue Mar 31 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99785 * 2 1 4 4 H 1.08995 * 110.88491 * 32.42759 * 3 2 1 5 5 C 1.55163 * 111.00276 * 268.54790 * 3 2 1 6 6 C 1.54327 * 102.93889 * 206.42641 * 5 3 2 7 7 N 1.47026 * 107.27232 * 22.19094 * 6 5 3 8 8 C 1.34769 * 125.64592 * 181.02680 * 7 6 5 9 9 O 1.21281 * 120.00096 * 180.02562 * 8 7 6 10 10 C 1.50707 * 120.00428 * 0.02562 * 8 7 6 11 11 H 1.09004 * 109.46724 * 300.00681 * 10 8 7 12 12 C 1.50702 * 109.46960 * 60.00162 * 10 8 7 13 13 H 1.07998 * 119.99619 * 31.49545 * 12 10 8 14 14 C 1.37881 * 119.99757 * 211.49717 * 12 10 8 15 15 N 1.31513 * 119.99514 * 188.23202 * 14 12 10 16 16 Si 1.86795 * 120.00173 * 8.22779 * 14 12 10 17 17 H 1.48494 * 109.47577 * 275.32817 * 16 14 12 18 18 H 1.48507 * 109.46951 * 155.32584 * 16 14 12 19 19 H 1.48499 * 109.47139 * 35.32893 * 16 14 12 20 20 C 1.50701 * 109.47324 * 180.02562 * 10 8 7 21 21 C 1.38235 * 119.99416 * 293.84425 * 20 10 8 22 22 C 1.38238 * 119.99277 * 179.74786 * 21 20 10 23 23 C 1.38240 * 120.00146 * 0.52540 * 22 21 20 24 24 C 1.38237 * 119.99676 * 359.74874 * 23 22 21 25 25 C 1.38228 * 119.99861 * 114.11681 * 20 10 8 26 26 C 1.47426 * 108.70233 * 1.28781 * 7 6 5 27 27 H 1.08999 * 109.47611 * 60.00017 * 1 2 3 28 28 H 1.09004 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47191 * 299.99423 * 1 2 3 30 30 H 1.08992 * 110.72121 * 88.06275 * 5 3 2 31 31 H 1.09001 * 110.72001 * 324.78393 * 5 3 2 32 32 H 1.09003 * 109.87789 * 262.77292 * 6 5 3 33 33 H 1.08994 * 109.88360 * 141.61060 * 6 5 3 34 34 H 0.96998 * 119.99608 * 179.97438 * 15 14 12 35 35 H 1.07988 * 120.00631 * 359.97438 * 21 20 10 36 36 H 1.08003 * 120.00077 * 180.29766 * 22 21 20 37 37 H 1.07995 * 119.99979 * 179.77347 * 23 22 21 38 38 H 1.08001 * 119.99359 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.00613 * 0.02562 * 25 20 10 40 40 H 1.09001 * 110.36366 * 94.48220 * 26 7 6 41 41 H 1.08999 * 110.36532 * 216.80476 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3830 2.0100 0.5461 5 6 2.2699 1.7986 -1.4481 6 6 3.4393 2.7900 -1.2710 7 7 4.1192 2.4432 -0.0144 8 6 5.1820 3.0871 0.5073 9 8 5.6641 2.7118 1.5549 10 6 5.7714 4.2735 -0.2112 11 1 6.1087 3.9677 -1.2016 12 6 4.7248 5.3493 -0.3470 13 1 3.9627 5.4599 0.4102 14 6 4.7402 6.1922 -1.4381 15 7 3.9322 7.2291 -1.4793 16 14 5.9085 5.8615 -2.8575 17 1 7.2367 6.4518 -2.5533 18 1 5.3670 6.4737 -4.0973 19 1 6.0507 4.3959 -3.0504 20 6 6.9413 4.8066 0.5752 21 6 6.7368 5.3743 1.8189 22 6 7.8105 5.8586 2.5424 23 6 9.0873 5.7850 2.0175 24 6 9.2909 5.2224 0.7714 25 6 8.2179 4.7330 0.0503 26 6 3.4496 1.2706 0.5773 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.3912 2.3059 -1.8461 31 1 2.5620 0.9687 -2.0915 32 1 3.0562 3.8090 -1.2163 33 1 4.1337 2.6972 -2.1060 34 1 3.9433 7.8223 -2.2466 35 1 5.7389 5.4362 2.2268 36 1 7.6515 6.2978 3.5162 37 1 9.9257 6.1667 2.5812 38 1 10.2884 5.1654 0.3612 39 1 8.3770 4.2938 -0.9235 40 1 3.9580 0.3534 0.2799 41 1 3.4244 1.3562 1.6636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635161753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:40 Heat of formation + Delta-G solvation = -68.946746 kcal Electronic energy + Delta-G solvation = -23453.072466 eV Core-core repulsion = 20104.238229 eV Total energy + Delta-G solvation = -3348.834237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30381 -39.98211 -39.00387 -37.16798 -35.54992 -33.36821 -31.90514 -31.63873 -30.20637 -29.15224 -27.17573 -25.75065 -24.21705 -23.35522 -22.38192 -21.96594 -20.12581 -19.17052 -18.22301 -17.98166 -17.56572 -16.51615 -16.47532 -16.14099 -15.95881 -15.83694 -15.58086 -15.11455 -14.78967 -14.61399 -14.20573 -14.15722 -13.87531 -13.73484 -13.48058 -13.42221 -12.97454 -12.83844 -12.72291 -12.50257 -12.29697 -12.02166 -11.99898 -11.65941 -11.64406 -11.42994 -10.88190 -10.62106 -10.57282 -9.65898 -9.57562 -9.38963 -8.34494 -6.39231 0.62970 0.69446 1.32163 1.37182 1.41628 1.74786 2.02664 2.29869 2.84907 2.94836 3.13225 3.48259 3.62542 3.97226 4.06402 4.14954 4.19539 4.32314 4.32597 4.38319 4.40211 4.53416 4.55157 4.58094 4.66453 4.76238 4.80643 4.87468 4.89052 4.92102 4.95882 5.14231 5.21560 5.30865 5.39925 5.47620 5.68695 5.72898 5.94136 6.17723 6.19484 6.29204 6.53397 6.60489 7.22551 7.29987 8.79924 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.005808 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.529599 B = 4819.606644 C = 5880.943468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.391 6.391 3 C 0.086 3.914 4 H 0.081 0.919 5 C -0.142 4.142 6 C 0.102 3.898 7 N -0.613 5.613 8 C 0.544 3.456 9 O -0.587 6.587 10 C 0.031 3.969 11 H 0.073 0.927 12 C -0.492 4.492 13 H 0.038 0.962 14 C 0.046 3.954 15 N -0.925 5.925 16 Si 0.910 3.090 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.239 1.239 20 C -0.058 4.058 21 C -0.102 4.102 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.153 4.153 26 C 0.109 3.891 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.270 0.730 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -9.744 -1.183 9.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.027 3.973 4 H 0.099 0.901 5 C -0.180 4.180 6 C -0.021 4.021 7 N -0.347 5.347 8 C 0.335 3.665 9 O -0.468 6.468 10 C 0.010 3.990 11 H 0.090 0.910 12 C -0.529 4.529 13 H 0.057 0.943 14 C -0.155 4.155 15 N -0.563 5.563 16 Si 0.734 3.266 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.163 1.163 20 C -0.059 4.059 21 C -0.120 4.120 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.171 4.171 26 C -0.014 4.014 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.153 0.847 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.526 -9.915 -0.726 9.955 hybrid contribution -0.174 0.612 -0.557 0.846 sum -0.700 -9.303 -1.283 9.417 Atomic orbital electron populations 1.23026 0.78934 1.04198 1.01037 1.87834 1.21863 1.26242 1.95033 1.23114 0.92969 0.85199 0.96017 0.90076 1.23150 0.98225 0.99174 0.97415 1.22167 0.94364 1.00242 0.85321 1.48208 1.30733 1.30772 1.24987 1.20859 0.78408 0.82724 0.84505 1.90568 1.62620 1.68510 1.25069 1.18377 0.93231 0.91769 0.95620 0.90979 1.20267 1.11222 1.13790 1.07644 0.94344 1.25539 0.96219 0.93642 1.00096 1.69990 1.39951 1.14803 1.31548 0.86254 0.80272 0.80504 0.79604 1.19168 1.20491 1.16254 1.20101 0.94317 0.96719 0.94761 1.20813 0.98273 0.98043 0.94912 1.21362 0.93070 1.00345 1.00345 1.21357 0.97037 1.00654 0.96306 1.21361 0.99016 0.98645 0.95226 1.21232 0.92545 1.02584 1.00704 1.22077 0.92215 0.88818 0.98242 0.92761 0.87728 0.93414 0.88111 0.88647 0.90755 0.91541 0.92020 0.89338 0.84727 0.83103 0.83346 0.86231 0.90501 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.89 113.37 1.23 1.63 16 2 O -0.39 -9.52 10.51 -148.98 -1.57 -11.08 16 3 C 0.09 2.30 3.50 32.06 0.11 2.41 16 4 H 0.08 2.14 7.90 -2.39 -0.02 2.12 16 5 C -0.14 -3.61 6.68 31.79 0.21 -3.39 16 6 C 0.10 3.51 6.08 86.73 0.53 4.04 16 7 N -0.61 -24.17 3.32 -811.35 -2.69 -26.87 16 8 C 0.54 25.33 7.10 87.66 0.62 25.95 16 9 O -0.59 -29.89 15.68 -3.03 -0.05 -29.93 16 10 C 0.03 1.48 1.48 -13.03 -0.02 1.46 16 11 H 0.07 3.27 4.88 -2.38 -0.01 3.26 16 12 C -0.49 -25.89 5.96 25.60 0.15 -25.74 16 13 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 14 C 0.05 2.43 5.47 84.66 0.46 2.89 16 15 N -0.93 -52.81 13.96 21.45 0.30 -52.52 16 16 Si 0.91 39.98 27.32 68.60 1.87 41.85 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.24 -9.46 6.39 99.48 0.64 -8.82 16 20 C -0.06 -2.68 4.29 -19.87 -0.09 -2.76 16 21 C -0.10 -4.69 8.31 22.27 0.19 -4.50 16 22 C -0.13 -5.01 10.05 22.27 0.22 -4.78 16 23 C -0.14 -4.40 10.05 22.27 0.22 -4.18 16 24 C -0.12 -4.18 10.05 22.27 0.22 -3.96 16 25 C -0.15 -6.12 9.67 22.27 0.22 -5.90 16 26 C 0.11 3.62 6.65 86.93 0.58 4.20 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.05 0.75 8.11 -2.39 -0.02 0.73 16 30 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 3.00 6.59 -2.39 -0.02 2.98 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.09 4.41 7.89 -2.92 -0.02 4.39 16 36 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 39 H 0.12 4.36 7.95 -2.91 -0.02 4.33 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.07 2.34 8.03 -2.39 -0.02 2.32 16 Total: -1.00 -67.27 338.36 3.67 -63.60 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.94 Total: 27.58 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 4.87 Total: -12.63 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -2.39 Total: -79.38 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.61 Total: -41.02 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 1.87 Total: 41.85 kcal Total: -67.27 3.67 -63.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635161753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.348 kcal (2) G-P(sol) polarization free energy of solvation -67.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds