Wall clock time and date at job start Tue Mar 31 2020 07:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38068 * 119.56796 * 2 1 4 4 C 1.38841 * 119.32245 * 180.02562 * 3 2 1 5 5 C 1.38340 * 118.51022 * 359.97438 * 4 3 2 6 6 C 1.39099 * 119.09645 * 0.02562 * 5 4 3 7 7 N 1.39005 * 119.70327 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00174 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.46971 * 175.06344 * 8 7 6 10 10 H 1.08994 * 109.87394 * 54.42455 * 9 8 7 11 11 C 1.54328 * 109.88403 * 293.24906 * 9 8 7 12 12 C 1.55158 * 102.94366 * 218.39376 * 11 9 8 13 13 C 1.54910 * 101.58045 * 35.49859 * 12 11 9 14 14 N 1.47026 * 109.88044 * 175.44177 * 9 8 7 15 15 C 1.34774 * 125.64557 * 298.31835 * 14 9 8 16 16 O 1.21687 * 120.00232 * 4.92446 * 15 14 9 17 17 C 1.46375 * 119.99700 * 184.91809 * 15 14 9 18 18 H 1.07998 * 120.00023 * 0.02562 * 17 15 14 19 19 C 1.40048 * 120.00017 * 180.02562 * 17 15 14 20 20 N 1.30678 * 119.99983 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00133 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46922 * 90.00383 * 21 19 17 23 23 H 1.48498 * 109.47091 * 210.00134 * 21 19 17 24 24 H 1.48497 * 109.47445 * 330.00546 * 21 19 17 25 25 N 1.31934 * 119.57284 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.46802 * 89.99842 * 1 2 3 27 27 H 1.09000 * 109.47061 * 209.99981 * 1 2 3 28 28 H 1.09001 * 109.47031 * 330.00043 * 1 2 3 29 29 H 1.07996 * 120.34381 * 359.97438 * 3 2 1 30 30 H 1.08006 * 120.74667 * 180.02562 * 4 3 2 31 31 H 1.07997 * 120.45296 * 179.72683 * 5 4 3 32 32 H 0.97001 * 119.99289 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.47186 * 295.06549 * 8 7 6 34 34 H 1.09007 * 109.46743 * 55.06468 * 8 7 6 35 35 H 1.09002 * 110.71935 * 336.75272 * 11 9 8 36 36 H 1.08994 * 110.72267 * 100.02147 * 11 9 8 37 37 H 1.09003 * 111.00164 * 277.42844 * 12 11 9 38 38 H 1.08995 * 111.00490 * 153.57492 * 12 11 9 39 39 H 1.09004 * 110.36640 * 204.15464 * 13 12 11 40 40 H 1.09000 * 110.36845 * 81.83291 * 13 12 11 41 41 H 0.97001 * 119.99866 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2009 0.0000 4 6 3.5767 1.1949 -0.0005 5 6 4.2318 -0.0235 -0.0005 6 6 3.4816 -1.1949 -0.0005 7 7 4.1269 -2.4261 -0.0010 8 6 5.5907 -2.4860 -0.0022 9 6 6.0415 -3.9428 0.1216 10 1 5.5773 -4.5421 -0.6615 11 6 5.6545 -4.4959 1.5094 12 6 6.8723 -5.3820 1.8823 13 6 8.0437 -4.5746 1.2692 14 7 7.5054 -4.0241 0.0120 15 6 8.2344 -3.6570 -1.0605 16 8 7.6915 -3.1310 -2.0141 17 6 9.6792 -3.8910 -1.0782 18 1 10.1610 -4.3581 -0.2320 19 6 10.4368 -3.5091 -2.1924 20 7 9.8539 -2.9434 -3.2161 21 14 12.2808 -3.8069 -2.2147 22 1 12.5590 -5.1451 -2.7954 23 1 12.9409 -2.7628 -3.0388 24 1 12.8083 -3.7499 -0.8277 25 7 2.1582 -1.1475 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6469 2.1353 -0.0004 30 1 4.1329 2.1208 -0.0001 31 1 5.3110 -0.0648 -0.0054 32 1 3.6078 -3.2455 -0.0014 33 1 5.9708 -2.0658 -0.9333 34 1 5.9784 -1.9128 0.8401 35 1 5.5333 -3.6850 2.2276 36 1 4.7463 -5.0953 1.4461 37 1 6.7941 -6.3672 1.4226 38 1 6.9787 -5.4647 2.9639 39 1 8.8901 -5.2302 1.0646 40 1 8.3407 -3.7684 1.9399 41 1 10.3788 -2.6785 -3.9876 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372241663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:57 Heat of formation + Delta-G solvation = -0.403647 kcal Electronic energy + Delta-G solvation = -22656.152668 eV Core-core repulsion = 19342.583434 eV Total energy + Delta-G solvation = -3313.569234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.08406 -38.86736 -36.07631 -35.31832 -32.58345 -32.55118 -31.60406 -30.41669 -29.00593 -26.98442 -26.18311 -24.87326 -22.59705 -22.24158 -21.25557 -20.58672 -18.96458 -17.34457 -16.46968 -16.42362 -15.91027 -15.51876 -15.16780 -14.71745 -14.35503 -13.99102 -13.89500 -13.63385 -13.25981 -12.91551 -12.81347 -12.70653 -12.50309 -12.22115 -12.03963 -11.89277 -11.60258 -11.31657 -11.15332 -10.93709 -10.82432 -10.67583 -10.43297 -10.30284 -10.20144 -9.89932 -9.31117 -9.26515 -8.91409 -7.72004 -7.41486 -7.32695 -6.26689 -4.71899 1.45942 1.66469 3.09696 3.16687 3.19734 3.33002 4.03780 4.07989 4.46916 4.51090 4.67299 4.91146 4.97542 5.02656 5.17426 5.25187 5.39964 5.45452 5.55711 5.56301 5.68293 5.69032 5.71488 5.75302 5.81198 5.99941 6.02952 6.06384 6.12962 6.26623 6.39180 6.49177 6.50451 6.57641 6.60885 6.79306 7.23902 7.31433 7.37483 7.84395 8.03002 8.32079 8.41426 8.95086 9.38419 10.48980 10.67773 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.003823 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.183345 B = 7322.264772 C = 8296.577800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.170 3.830 3 C -0.246 4.246 4 C -0.032 4.032 5 C -0.242 4.242 6 C 0.415 3.585 7 N -0.715 5.715 8 C 0.116 3.884 9 C 0.139 3.861 10 H 0.063 0.937 11 C -0.128 4.128 12 C -0.135 4.135 13 C 0.117 3.883 14 N -0.637 5.637 15 C 0.570 3.430 16 O -0.571 6.571 17 C -0.538 4.538 18 H 0.070 0.930 19 C 0.087 3.913 20 N -0.766 5.766 21 Si 0.908 3.092 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.264 1.264 25 N -0.552 5.552 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.400 0.600 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.045 2.788 9.748 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.032 3.968 3 C -0.269 4.269 4 C -0.057 4.057 5 C -0.268 4.268 6 C 0.178 3.822 7 N -0.346 5.346 8 C -0.009 4.009 9 C 0.033 3.967 10 H 0.081 0.919 11 C -0.166 4.166 12 C -0.173 4.173 13 C -0.007 4.007 14 N -0.378 5.378 15 C 0.377 3.623 16 O -0.453 6.453 17 C -0.574 4.574 18 H 0.088 0.912 19 C -0.133 4.133 20 N -0.394 5.394 21 Si 0.733 3.267 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.188 1.188 25 N -0.271 5.271 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.235 0.765 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.464 2.412 8.932 14.732 hybrid contribution 1.319 0.312 0.004 1.356 sum -10.145 2.724 8.936 13.790 Atomic orbital electron populations 1.20687 0.89367 1.02996 1.02809 1.20828 0.96106 0.87666 0.92247 1.21503 0.94761 0.98595 1.12046 1.21271 0.94184 0.97487 0.92805 1.21475 1.01229 0.91984 1.12064 1.18315 0.87908 0.86558 0.89451 1.44558 1.06341 1.04441 1.79283 1.22014 0.77252 0.98644 1.02978 1.21257 0.85536 0.93632 0.96271 0.91906 1.22701 0.98147 0.99367 0.96373 1.22799 0.95396 0.98867 1.00244 1.21928 0.96079 0.96109 0.86577 1.48784 1.03134 1.69681 1.16176 1.18081 0.87246 0.77886 0.79081 1.90613 1.72625 1.47239 1.34851 1.20886 0.90589 1.42411 1.03557 0.91173 1.25731 0.99978 0.92954 0.94668 1.70015 1.36491 1.28740 1.04164 0.86357 0.82743 0.78596 0.79023 1.19703 1.20402 1.18849 1.66939 1.07741 1.30145 1.22281 0.90627 0.90797 0.90927 0.85703 0.85319 0.84998 0.76516 0.89474 0.92369 0.91089 0.91151 0.91129 0.90985 0.90909 0.93436 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.17 36.01 0.37 -0.62 16 2 C 0.17 2.33 6.78 -82.61 -0.56 1.77 16 3 C -0.25 -3.11 9.73 -39.42 -0.38 -3.50 16 4 C -0.03 -0.43 10.17 -39.32 -0.40 -0.83 16 5 C -0.24 -3.88 9.31 -39.22 -0.37 -4.25 16 6 C 0.41 6.96 7.65 -155.01 -1.19 5.78 16 7 N -0.72 -11.69 5.53 -60.42 -0.33 -12.02 16 8 C 0.12 2.13 4.33 -4.04 -0.02 2.11 16 9 C 0.14 2.54 2.95 -66.95 -0.20 2.34 16 10 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 11 C -0.13 -1.77 6.21 -24.89 -0.15 -1.93 16 12 C -0.13 -1.83 7.09 -24.58 -0.17 -2.00 16 13 C 0.12 2.05 6.62 -2.53 -0.02 2.03 16 14 N -0.64 -13.90 3.06 -164.66 -0.50 -14.40 16 15 C 0.57 15.70 7.60 -12.99 -0.10 15.60 16 16 O -0.57 -17.80 13.82 5.20 0.07 -17.73 16 17 C -0.54 -14.74 9.00 -35.63 -0.32 -15.06 16 18 H 0.07 1.77 6.54 -52.49 -0.34 1.42 16 19 C 0.09 2.36 5.50 -17.36 -0.10 2.27 16 20 N -0.77 -22.45 11.83 55.55 0.66 -21.79 16 21 Si 0.91 19.71 29.56 -169.99 -5.02 14.68 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 24 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 25 N -0.55 -8.90 10.30 -8.67 -0.09 -8.99 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.13 2.17 6.69 -52.49 -0.35 1.82 16 32 H 0.40 6.02 8.52 -40.82 -0.35 5.67 16 33 H 0.09 1.98 6.54 -51.93 -0.34 1.64 16 34 H 0.06 1.04 7.56 -51.92 -0.39 0.64 16 35 H 0.07 0.95 7.77 -51.93 -0.40 0.55 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.30 6.96 -51.93 -0.36 0.94 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -33.39 338.58 -9.62 -43.02 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.90 Total: 8.41 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -3.60 Total: 3.72 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.27 Total: -57.20 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.07 Total: -17.73 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.39 -9.62 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372241663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.613 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds