Wall clock time and date at job start Tue Mar 31 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46872 * 234.62268 * 3 2 1 5 5 C 1.36983 * 119.99591 * 263.56070 * 4 3 2 6 6 H 1.07998 * 119.99800 * 203.36974 * 5 4 3 7 7 C 1.38969 * 120.00079 * 23.38139 * 5 4 3 8 8 N 1.31414 * 120.00582 * 19.70930 * 7 5 4 9 9 Si 1.86809 * 119.99898 * 199.71324 * 7 5 4 10 10 H 1.48496 * 109.47005 * 59.99415 * 9 7 5 11 11 H 1.48496 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46770 * 299.99952 * 9 7 5 13 13 C 1.34771 * 119.99768 * 83.56739 * 4 3 2 14 14 O 1.21625 * 120.00611 * 4.95906 * 13 4 3 15 15 C 1.47363 * 119.99722 * 184.95674 * 13 4 3 16 16 C 1.41320 * 126.42211 * 32.54240 * 15 13 4 17 17 N 1.30446 * 108.02877 * 180.30269 * 16 15 13 18 18 N 1.39938 * 108.91011 * 359.73813 * 17 16 15 19 19 C 1.46493 * 125.74725 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47250 * 247.32165 * 19 18 17 21 21 C 1.53003 * 109.47732 * 7.32262 * 19 18 17 22 22 C 1.53004 * 109.47333 * 127.32258 * 19 18 17 23 23 C 1.34281 * 108.49838 * 0.02562 * 18 17 16 24 24 C 1.50706 * 126.29773 * 179.97438 * 23 18 17 25 25 H 4.40644 * 5.51494 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47131 * 114.62011 * 3 2 1 27 27 H 1.08999 * 109.46985 * 354.62083 * 3 2 1 28 28 H 0.96999 * 120.00325 * 180.02562 * 8 7 5 29 29 H 1.08004 * 125.98367 * 0.03999 * 16 15 13 30 30 H 1.09002 * 109.47119 * 65.36863 * 20 19 18 31 31 H 1.08999 * 109.47308 * 185.36124 * 20 19 18 32 32 H 1.08996 * 109.47336 * 305.36149 * 20 19 18 33 33 H 1.09007 * 109.46488 * 59.99553 * 21 19 18 34 34 H 1.08996 * 109.47821 * 180.02562 * 21 19 18 35 35 H 1.09002 * 109.47115 * 300.00351 * 21 19 18 36 36 H 1.09005 * 109.46353 * 59.99825 * 22 19 18 37 37 H 1.08996 * 109.47174 * 180.02562 * 22 19 18 38 38 H 1.08997 * 109.47037 * 300.00424 * 22 19 18 39 39 H 1.08995 * 109.47122 * 85.69773 * 24 23 18 40 40 H 1.09007 * 109.47140 * 325.69959 * 24 23 18 41 41 H 1.09000 * 109.47282 * 205.70703 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8006 1.1262 5 6 3.4870 2.1101 0.9340 6 1 4.1763 2.5888 1.6138 7 6 2.9582 2.8225 -0.1355 8 7 1.8597 2.4056 -0.7240 9 14 3.8090 4.3731 -0.7369 10 1 5.1895 4.0427 -1.1732 11 1 3.0515 4.9415 -1.8807 12 1 3.8628 5.3672 0.3649 13 6 3.2355 0.2480 2.3512 14 8 3.0087 -0.9371 2.5046 15 6 3.6213 1.0796 3.5050 16 6 3.3134 2.4458 3.6949 17 7 3.8340 2.8229 4.8299 18 7 4.4852 1.7313 5.4152 19 6 5.1959 1.7449 6.6961 20 6 6.6929 1.5457 6.4509 21 6 4.9674 3.0881 7.3921 22 6 4.6697 0.6149 7.5834 23 6 4.3497 0.6695 4.6044 24 6 4.8971 -0.7136 4.8464 25 1 -1.0502 0.0000 -0.0003 26 1 3.0092 0.4290 -0.9343 27 1 3.0098 -1.0223 0.0963 28 1 1.4908 2.9027 -1.4708 29 1 2.7498 3.0695 3.0168 30 1 7.0875 2.3993 5.8996 31 1 7.2095 1.4606 7.4069 32 1 6.8483 0.6356 5.8717 33 1 3.9008 3.2300 7.5668 34 1 5.4965 3.0984 8.3449 35 1 5.3422 3.8932 6.7601 36 1 4.8326 -0.3421 7.0876 37 1 5.1982 0.6253 8.5366 38 1 3.6032 0.7567 7.7581 39 1 4.1931 -1.2816 5.4546 40 1 5.8514 -0.6405 5.3682 41 1 5.0429 -1.2189 3.8917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281511708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:55 Heat of formation + Delta-G solvation = 106.501578 kcal Electronic energy + Delta-G solvation = -23691.846042 eV Core-core repulsion = 20382.912566 eV Total energy + Delta-G solvation = -3308.933476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.95984 -38.27627 -36.48365 -34.96998 -31.94582 -31.85027 -31.28883 -29.73274 -27.55314 -27.46911 -27.02341 -26.01043 -24.55348 -21.94635 -21.09782 -18.96548 -18.52973 -17.52572 -16.75655 -16.07318 -15.42324 -15.07084 -14.57425 -14.31725 -14.20191 -14.05892 -13.79501 -13.51960 -12.86951 -12.70635 -12.46201 -12.28760 -12.23260 -12.15884 -11.90295 -11.84575 -11.72747 -11.58635 -11.51388 -11.18557 -11.01456 -10.92298 -10.53181 -10.45741 -10.01777 -9.24393 -9.22217 -8.70646 -8.63953 -8.42001 -7.80993 -7.71349 -6.30612 -3.90402 2.27381 2.81083 3.09282 3.22765 3.23994 3.26041 3.96716 4.18080 4.34530 4.35946 4.50131 4.71666 4.81058 5.02550 5.09442 5.17269 5.25744 5.38434 5.42795 5.50212 5.58879 5.66273 5.72585 5.76215 5.83244 5.86717 5.91376 6.09415 6.20672 6.31391 6.38017 6.44568 6.60631 6.83519 6.91024 7.23749 7.32928 7.47308 7.54325 7.76753 8.32646 8.41205 9.07044 9.10929 9.54166 9.95148 10.67747 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.005705 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.195217 B = 4906.822651 C = 5884.790746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.099 4.099 3 C 0.245 3.755 4 N -0.433 5.433 5 C -0.341 4.341 6 H 0.102 0.898 7 C 0.039 3.961 8 N -0.849 5.849 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.538 3.462 14 O -0.607 6.607 15 C -0.242 4.242 16 C 0.099 3.901 17 N -0.318 5.318 18 N -0.364 5.364 19 C 0.182 3.818 20 C -0.165 4.165 21 C -0.139 4.139 22 C -0.168 4.168 23 C 0.117 3.883 24 C -0.087 4.087 25 H 0.196 0.804 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.270 0.730 29 H 0.197 0.803 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -0.979 11.315 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.100 4.100 3 C 0.122 3.878 4 N -0.150 5.150 5 C -0.468 4.468 6 H 0.119 0.881 7 C -0.168 4.168 8 N -0.485 5.485 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.328 3.672 14 O -0.494 6.494 15 C -0.256 4.256 16 C -0.087 4.087 17 N -0.137 5.137 18 N -0.147 5.147 19 C 0.099 3.901 20 C -0.223 4.223 21 C -0.196 4.196 22 C -0.226 4.226 23 C -0.013 4.013 24 C -0.145 4.145 25 H 0.213 0.787 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.213 0.787 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.103 -0.483 12.119 14.056 hybrid contribution -0.152 0.524 -1.107 1.234 sum 6.951 0.040 11.012 13.023 Atomic orbital electron populations 1.24137 0.95267 1.06407 1.03261 1.23090 0.94305 0.95061 0.97559 1.17949 0.84254 0.94218 0.91383 1.43398 1.55782 1.10848 1.04964 1.19624 1.25900 0.87102 1.14202 0.88089 1.25305 0.94655 0.98924 0.97869 1.70077 1.16110 1.39876 1.22400 0.86233 0.79493 0.81744 0.78707 1.19944 1.20999 1.19704 1.17188 0.81635 0.86390 0.81970 1.90594 1.57352 1.16355 1.85100 1.20079 1.11777 0.95440 0.98292 1.24400 0.96748 0.94552 0.93049 1.77059 1.16058 1.09127 1.11499 1.48463 1.42675 1.06871 1.16663 1.20564 0.91233 0.97828 0.80446 1.22358 0.93748 1.03366 1.02797 1.21851 1.03047 0.95090 0.99656 1.22405 1.02281 0.98471 0.99473 1.21181 0.98409 0.90854 0.90848 1.20606 0.99439 0.90276 1.04228 0.78686 0.88464 0.91399 0.91958 0.78656 0.91598 0.90735 0.91326 0.91567 0.91505 0.91173 0.90861 0.90645 0.91670 0.90406 0.91678 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.30 19.25 29.55 0.57 -5.73 16 2 C -0.10 -2.46 11.31 -37.12 -0.42 -2.88 16 3 C 0.24 5.97 5.10 -6.83 -0.03 5.94 16 4 N -0.43 -10.98 2.59 -119.17 -0.31 -11.29 16 5 C -0.34 -8.51 7.47 -14.98 -0.11 -8.62 16 6 H 0.10 2.48 5.80 -52.49 -0.30 2.18 16 7 C 0.04 0.96 4.86 -17.46 -0.08 0.88 16 8 N -0.85 -21.85 9.62 55.50 0.53 -21.32 16 9 Si 0.91 19.39 29.60 -169.99 -5.03 14.36 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.54 13.51 7.29 -12.55 -0.09 13.42 16 14 O -0.61 -16.09 15.49 5.26 0.08 -16.01 16 15 C -0.24 -5.40 5.45 -105.06 -0.57 -5.97 16 16 C 0.10 2.13 9.75 -16.97 -0.17 1.96 16 17 N -0.32 -6.25 11.54 30.87 0.36 -5.89 16 18 N -0.36 -6.22 3.43 -43.99 -0.15 -6.37 16 19 C 0.18 2.27 1.06 -131.82 -0.14 2.13 16 20 C -0.16 -1.74 8.59 37.16 0.32 -1.42 16 21 C -0.14 -1.59 8.00 37.16 0.30 -1.29 16 22 C -0.17 -1.75 8.36 37.16 0.31 -1.44 16 23 C 0.12 2.19 6.49 -81.57 -0.53 1.66 16 24 C -0.09 -1.34 7.90 36.01 0.28 -1.05 16 25 H 0.20 3.73 7.80 -54.08 -0.42 3.31 16 26 H 0.10 2.36 6.78 -51.93 -0.35 2.01 16 27 H 0.07 1.58 7.55 -51.93 -0.39 1.19 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.20 4.31 6.83 -52.48 -0.36 3.95 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.74 5.48 -51.93 -0.28 0.45 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.07 0.76 4.98 -51.93 -0.26 0.50 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.11 7.53 -51.93 -0.39 0.72 16 40 H 0.06 0.78 4.96 -51.93 -0.26 0.52 16 41 H 0.09 1.57 7.22 -51.93 -0.37 1.19 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -30.64 334.68 -5.33 -35.97 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.49 Total: 7.91 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.37 Total: -2.41 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.43 Total: -44.87 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.08 Total: -16.01 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.64 -5.33 -35.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281511708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.474 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds