Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47420 * 322.46538 * 3 2 1 5 5 C 1.52996 * 109.47090 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46736 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.47041 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.21602 * 119.99987 * 359.73127 * 8 7 6 10 10 C 1.47436 * 119.99867 * 180.02562 * 8 7 6 11 11 C 1.41286 * 126.41299 * 359.41281 * 10 8 7 12 12 N 1.30448 * 108.02337 * 179.87788 * 11 10 8 13 13 N 1.39938 * 108.89467 * 0.38911 * 12 11 10 14 14 C 1.46503 * 125.75356 * 179.75148 * 13 12 11 15 15 C 1.50696 * 109.46974 * 269.99715 * 14 13 12 16 16 H 1.08001 * 120.00163 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99873 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99984 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00024 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46911 * 59.99991 * 19 17 15 21 21 H 1.48493 * 109.47102 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46969 * 300.00135 * 19 17 15 23 23 C 1.34259 * 108.48882 * 359.74809 * 13 12 11 24 24 C 1.50699 * 126.28729 * 179.97438 * 23 13 12 25 25 H 4.44654 * 5.63405 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47428 * 202.46023 * 3 2 1 27 27 H 1.09001 * 109.46929 * 82.46159 * 3 2 1 28 28 H 1.08994 * 109.46801 * 59.99524 * 4 3 2 29 29 H 1.09001 * 109.46760 * 299.99724 * 4 3 2 30 30 H 1.08999 * 109.46983 * 60.00393 * 5 4 3 31 31 H 1.08993 * 109.47310 * 299.99833 * 5 4 3 32 32 H 1.09004 * 109.47178 * 60.00488 * 6 5 4 33 33 H 1.08993 * 109.47411 * 300.00171 * 6 5 4 34 34 H 0.97004 * 120.00014 * 0.02562 * 7 6 5 35 35 H 1.08000 * 125.99145 * 0.03887 * 11 10 8 36 36 H 1.09004 * 109.46911 * 29.99927 * 14 13 12 37 37 H 1.09002 * 109.46643 * 149.99548 * 14 13 12 38 38 H 0.96997 * 120.00146 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.47568 * 269.99949 * 24 23 13 40 40 H 1.09002 * 109.47528 * 29.99975 * 24 23 13 41 41 H 1.08998 * 109.46953 * 150.00240 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.1430 0.8788 5 6 4.6865 -1.1426 0.8783 6 6 5.1971 -2.2859 1.7576 7 7 6.6621 -2.2860 1.7566 8 6 7.3364 -3.2108 2.4684 9 8 6.7288 -4.0420 3.1153 10 6 8.8107 -3.2105 2.4678 11 6 9.6490 -2.3165 1.7647 12 7 10.8870 -2.6382 2.0207 13 7 10.8999 -3.7426 2.8800 14 6 12.0967 -4.4101 3.3982 15 6 12.5060 -5.5114 2.4546 16 1 11.9319 -5.6960 1.5586 17 6 13.6134 -6.2833 2.7350 18 7 14.3123 -6.0588 3.8263 19 14 14.1205 -7.6490 1.5656 20 1 14.4141 -7.0724 0.2289 21 1 15.3336 -8.3254 2.0909 22 1 13.0163 -8.6350 1.4477 23 6 9.6306 -4.0873 3.1493 24 6 9.1832 -5.2233 4.0328 25 1 -1.0498 -0.0002 0.0004 26 1 3.0089 0.9505 0.3926 27 1 3.0093 -0.1340 -1.0188 28 1 2.7936 -2.0928 0.4862 29 1 2.7932 -1.0083 1.8976 30 1 5.0498 -0.1929 1.2708 31 1 5.0496 -1.2775 -0.1405 32 1 4.8338 -3.2359 1.3656 33 1 4.8341 -2.1507 2.7764 34 1 7.1468 -1.6200 1.2443 35 1 9.3221 -1.5069 1.1290 36 1 12.9071 -3.6864 3.4856 37 1 11.8804 -4.8336 4.3790 38 1 15.0912 -6.6021 4.0237 39 1 9.0744 -6.1279 3.4345 40 1 9.9256 -5.3909 4.8131 41 1 8.2259 -4.9727 4.4898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889488607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = 60.041741 kcal Electronic energy + Delta-G solvation = -21404.985518 eV Core-core repulsion = 18094.037392 eV Total energy + Delta-G solvation = -3310.948126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76410 -38.85408 -36.71328 -34.65682 -33.88215 -32.54025 -31.98068 -31.11051 -29.12867 -27.25592 -26.60458 -24.34822 -23.26716 -21.81966 -21.67484 -19.75408 -18.97931 -18.38768 -17.03765 -16.74485 -16.24199 -15.71173 -15.16547 -14.97677 -14.59611 -14.46716 -14.29275 -13.96555 -13.47534 -13.36670 -12.93166 -12.60550 -12.43291 -12.14832 -12.07330 -12.01437 -11.76503 -11.63928 -11.45882 -11.13905 -11.08681 -10.86762 -10.52612 -10.43350 -10.36700 -10.16767 -9.95043 -9.38189 -8.93540 -8.70325 -8.58046 -7.89740 -6.33131 -4.41031 2.21010 2.46668 2.50969 2.80807 3.18852 3.20322 3.24277 3.29578 3.58002 3.94583 4.03527 4.24633 4.55043 4.58927 4.86497 5.00222 5.05106 5.08349 5.20349 5.27688 5.30875 5.39942 5.56128 5.57863 5.69407 5.73728 5.79276 5.91411 5.91916 6.01182 6.14335 6.43508 6.56558 6.65353 6.80949 6.91354 7.16985 7.28551 7.56369 7.75981 7.77755 7.80778 8.38815 8.62742 8.65444 9.25750 10.75015 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036001 B = 0.002365 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.566402 B =11836.891889 C =11844.047965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.186 4.186 3 C -0.014 4.014 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.123 3.877 7 N -0.736 5.736 8 C 0.603 3.397 9 O -0.557 6.557 10 C -0.333 4.333 11 C 0.057 3.943 12 N -0.296 5.296 13 N -0.314 5.314 14 C 0.251 3.749 15 C -0.540 4.540 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.890 5.890 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.165 3.835 24 C -0.093 4.093 25 H 0.216 0.784 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.175 0.825 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.270 0.730 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 10.560 -5.066 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.150 4.150 5 C -0.170 4.170 6 C -0.001 4.001 7 N -0.389 5.389 8 C 0.393 3.607 9 O -0.436 6.436 10 C -0.349 4.349 11 C -0.130 4.130 12 N -0.116 5.116 13 N -0.091 5.091 14 C 0.134 3.866 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.199 1.199 23 C 0.028 3.972 24 C -0.151 4.151 25 H 0.233 0.767 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.192 0.808 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.689 10.122 -4.648 21.756 hybrid contribution -0.374 -0.502 -0.835 1.044 sum -19.063 9.619 -5.483 22.045 Atomic orbital electron populations 1.24927 0.96034 1.01011 1.01172 1.23196 0.94668 1.00379 1.00320 1.18770 0.84616 1.00130 1.01529 1.21443 0.94647 0.98430 1.00435 1.21808 0.95427 0.99027 1.00737 1.21227 0.80198 0.98563 1.00062 1.45717 1.06551 1.34430 1.52176 1.17314 0.85954 0.79757 0.77664 1.90690 1.70115 1.39013 1.43813 1.19685 0.92832 1.06808 1.15546 1.23712 0.90434 0.99275 0.99568 1.77134 1.20476 1.03123 1.10867 1.49365 1.06602 1.20941 1.32186 1.19850 0.79150 0.92484 0.95117 1.21208 1.12779 1.15673 1.08222 0.91722 1.24921 0.95487 0.97594 0.95640 1.69902 1.18106 1.40045 1.24648 0.86376 0.78092 0.81245 0.80782 1.19908 1.20870 1.19852 1.21482 0.84923 0.95408 0.95436 1.20567 1.02370 0.94307 0.97824 0.76746 0.89436 0.89428 0.91132 0.91138 0.90941 0.90917 0.91719 0.91715 0.76838 0.80779 0.92518 0.92555 0.92060 0.89854 0.90891 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.60 19.25 29.55 0.57 -1.03 16 2 C -0.19 -1.51 13.34 -37.12 -0.50 -2.00 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.11 -0.70 5.17 -26.73 -0.14 -0.84 16 5 C -0.13 -0.84 5.33 -26.73 -0.14 -0.98 16 6 C 0.12 1.22 5.67 -4.04 -0.02 1.19 16 7 N -0.74 -8.74 5.55 -61.38 -0.34 -9.08 16 8 C 0.60 10.00 7.81 -12.52 -0.10 9.90 16 9 O -0.56 -10.72 14.84 5.28 0.08 -10.64 16 10 C -0.33 -6.09 6.13 -105.07 -0.64 -6.73 16 11 C 0.06 0.98 11.50 -16.98 -0.20 0.79 16 12 N -0.30 -6.35 12.50 30.86 0.39 -5.97 16 13 N -0.31 -7.12 3.56 -57.77 -0.21 -7.33 16 14 C 0.25 6.27 5.97 -5.19 -0.03 6.24 16 15 C -0.54 -14.59 9.39 -34.44 -0.32 -14.92 16 16 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 19 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.16 3.38 7.01 -81.61 -0.57 2.81 16 24 C -0.09 -1.69 9.57 36.01 0.34 -1.35 16 25 H 0.22 0.91 7.80 -54.10 -0.42 0.49 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 3.68 7.43 -40.82 -0.30 3.38 16 35 H 0.18 2.10 7.50 -52.49 -0.39 1.71 16 36 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 41 H 0.09 1.64 6.50 -51.93 -0.34 1.30 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -32.08 358.73 -6.93 -39.01 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.96 Total: 2.10 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.01 Total: -5.45 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.58 Total: -46.24 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.08 -6.93 -39.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889488607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.054 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds