Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.99828 * 2 1 4 4 C 1.54336 * 109.99027 * 238.96272 * 2 1 3 5 5 H 1.09003 * 110.84707 * 100.19931 * 4 2 1 6 6 N 1.46496 * 110.51840 * 336.97417 * 4 2 1 7 7 C 1.36938 * 120.00009 * 155.11644 * 6 4 2 8 8 H 1.07995 * 119.99716 * 0.02562 * 7 6 4 9 9 C 1.38810 * 119.99927 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99788 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00059 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47247 * 90.00064 * 11 9 7 13 13 H 1.48503 * 109.47237 * 209.99901 * 11 9 7 14 14 H 1.48496 * 109.47320 * 329.99950 * 11 9 7 15 15 C 1.55163 * 103.01986 * 218.66411 * 4 2 1 16 16 C 1.54910 * 101.57996 * 35.30563 * 15 4 2 17 17 N 1.47022 * 109.88492 * 121.09496 * 2 1 3 18 18 C 1.34774 * 125.64823 * 298.40140 * 17 2 1 19 19 O 1.21787 * 120.00298 * 359.71153 * 18 17 2 20 20 C 1.41517 * 120.00381 * 179.71660 * 18 17 2 21 21 C 1.35611 * 120.00329 * 188.27522 * 20 18 17 22 22 C 1.41668 * 120.00114 * 32.43395 * 21 20 18 23 23 C 1.38286 * 126.25881 * 187.08406 * 22 21 20 24 24 C 1.39789 * 107.07404 * 179.80261 * 23 22 21 25 25 C 1.35496 * 107.91622 * 0.37782 * 24 23 22 26 26 N 1.35755 * 108.90808 * 359.61861 * 25 24 23 27 27 H 0.97003 * 125.69531 * 180.23802 * 26 25 24 28 28 H 1.09004 * 109.47183 * 308.04579 * 1 2 3 29 29 H 1.08999 * 109.47302 * 68.05484 * 1 2 3 30 30 H 1.09005 * 109.46941 * 188.04788 * 1 2 3 31 31 H 0.96998 * 119.99799 * 335.12025 * 6 4 2 32 32 H 0.97005 * 119.99751 * 179.97438 * 10 9 7 33 33 H 1.09004 * 111.00020 * 277.23457 * 15 4 2 34 34 H 1.08995 * 111.03413 * 153.39721 * 15 4 2 35 35 H 1.09002 * 110.36632 * 204.15239 * 16 15 4 36 36 H 1.09005 * 110.36255 * 81.83062 * 16 15 4 37 37 H 1.08009 * 119.99786 * 8.26756 * 20 18 17 38 38 H 1.08007 * 120.00074 * 212.43437 * 21 20 18 39 39 H 1.07989 * 126.46346 * 0.03367 * 23 22 21 40 40 H 1.08006 * 126.04489 * 180.24213 * 24 23 22 41 41 H 1.07998 * 125.55196 * 179.87367 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 2.3597 -0.0449 -2.0192 6 7 1.0465 -1.6790 -1.7494 7 6 1.0611 -2.0558 -3.0658 8 1 1.8182 -1.6667 -3.7304 9 6 0.1027 -2.9377 -3.5460 10 7 0.1165 -3.2994 -4.8114 11 14 -1.2073 -3.6100 -2.3965 12 1 -2.3878 -2.7092 -2.4105 13 1 -1.6135 -4.9653 -2.8477 14 1 -0.6622 -3.6901 -1.0176 15 6 3.2864 -1.5184 -0.6915 16 6 2.8099 -1.8825 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.8073 -0.3621 2.4657 19 8 1.1447 0.6278 2.7191 20 6 2.3436 -1.1426 3.5173 21 6 1.9842 -0.8904 4.8003 22 6 0.6835 -0.4099 5.0902 23 6 0.2255 0.0179 6.3230 24 6 -1.1061 0.4080 6.1533 25 6 -1.4362 0.2098 4.8542 26 7 -0.3563 -0.2841 4.1963 27 1 -0.3226 -0.5106 3.2537 28 1 -0.3634 0.6334 0.8093 29 1 -0.3634 0.3840 -0.9532 30 1 -0.3633 -1.0176 0.1439 31 1 0.3667 -2.0286 -1.1523 32 1 -0.5531 -3.9160 -5.1468 33 1 4.1670 -0.8768 -0.6579 34 1 3.4813 -2.4155 -1.2789 35 1 3.6656 -2.0411 1.3932 36 1 2.1801 -2.7718 0.7114 37 1 3.0390 -1.9394 3.2979 38 1 2.6898 -1.0558 5.6012 39 1 0.7910 0.0486 7.2424 40 1 -1.7574 0.7965 6.9223 41 1 -2.4002 0.4154 4.4128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986187441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = 76.468367 kcal Electronic energy + Delta-G solvation = -23424.022898 eV Core-core repulsion = 20113.787084 eV Total energy + Delta-G solvation = -3310.235814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33309 -39.99347 -37.78533 -34.17487 -33.80787 -31.78785 -31.00906 -30.90820 -29.68641 -28.05930 -25.53854 -24.29310 -23.16974 -22.01898 -20.54386 -20.37748 -19.58511 -18.80097 -17.98853 -17.42710 -16.71177 -16.01129 -14.77399 -14.67299 -14.47880 -14.18041 -14.13456 -13.82170 -13.49028 -13.40297 -13.19013 -12.85311 -12.60656 -12.50213 -12.31054 -12.02121 -11.94328 -11.60810 -11.25095 -11.18034 -10.87757 -10.79384 -10.37460 -10.19221 -9.95363 -9.68794 -9.63756 -9.05353 -8.90145 -8.47320 -7.55698 -7.40472 -5.88106 -3.24665 0.45198 2.59269 2.94672 3.22450 3.26837 3.30050 3.36581 3.36972 3.52450 4.47952 4.74762 4.91460 4.94829 5.07355 5.13520 5.16268 5.30477 5.31416 5.41310 5.45802 5.50912 5.54508 5.63465 5.72689 5.81928 5.89818 5.97801 6.10731 6.19481 6.22758 6.25933 6.29787 6.41950 6.57816 6.60855 6.71767 6.90515 7.08315 7.57720 7.70996 7.87550 8.28758 8.30981 9.08115 9.80393 9.99381 11.29910 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.004529 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.938132 B = 6180.626500 C = 6853.257066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 H 0.076 0.924 4 C 0.177 3.823 5 H 0.080 0.920 6 N -0.738 5.738 7 C -0.248 4.248 8 H 0.093 0.907 9 C 0.010 3.990 10 N -0.930 5.930 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.280 1.280 15 C -0.159 4.159 16 C 0.103 3.897 17 N -0.605 5.605 18 C 0.555 3.445 19 O -0.559 6.559 20 C -0.282 4.282 21 C 0.041 3.959 22 C 0.006 3.994 23 C -0.149 4.149 24 C -0.219 4.219 25 C 0.021 3.979 26 N -0.508 5.508 27 H 0.420 0.580 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.364 0.636 32 H 0.261 0.739 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 4.468 19.865 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 H 0.094 0.906 4 C 0.066 3.934 5 H 0.097 0.903 6 N -0.381 5.381 7 C -0.378 4.378 8 H 0.111 0.889 9 C -0.186 4.186 10 N -0.577 5.577 11 Si 0.710 3.290 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.206 1.206 15 C -0.200 4.200 16 C -0.020 4.020 17 N -0.337 5.337 18 C 0.350 3.650 19 O -0.442 6.442 20 C -0.303 4.303 21 C 0.021 3.979 22 C -0.105 4.105 23 C -0.174 4.174 24 C -0.243 4.243 25 C -0.118 4.118 26 N -0.103 5.103 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.199 0.801 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.061 4.899 19.552 20.388 hybrid contribution -0.837 -0.792 0.241 1.177 sum 2.224 4.107 19.793 20.337 Atomic orbital electron populations 1.21958 0.94874 1.01507 1.02581 1.22016 0.94886 0.96238 0.85018 0.90641 1.21185 0.88609 0.91377 0.92220 0.90254 1.42858 1.32905 1.53328 1.09020 1.19071 1.12120 1.22119 0.84488 0.88944 1.24638 0.98707 0.99582 0.95673 1.69689 1.37196 1.37863 1.12925 0.86651 0.82990 0.78880 0.80516 1.20938 1.21588 1.20603 1.23508 0.99205 1.02633 0.94679 1.22350 0.94697 0.88467 0.96479 1.48711 1.51953 1.27902 1.05142 1.16845 0.80402 0.85837 0.81884 1.90827 1.41305 1.28564 1.83528 1.21932 1.10708 1.04523 0.93182 1.20782 0.91290 0.89241 0.96635 1.18242 0.89914 1.12526 0.89837 1.21437 0.96007 1.03744 0.96235 1.20778 0.97047 1.10480 0.95982 1.22103 0.93004 1.03088 0.93606 1.42728 1.09327 1.46769 1.11513 0.73701 0.92630 0.90615 0.93026 0.80122 0.92919 0.91599 0.89046 0.91258 0.91370 0.84761 0.83757 0.84319 0.84646 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.14 37.16 0.30 -2.23 16 2 C 0.12 1.98 3.42 -66.95 -0.23 1.75 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.18 3.14 3.49 -66.09 -0.23 2.91 16 5 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 6 N -0.74 -16.06 4.34 -51.65 -0.22 -16.29 16 7 C -0.25 -6.55 10.44 -15.06 -0.16 -6.71 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 9 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 10 N -0.93 -28.18 13.97 55.49 0.78 -27.41 16 11 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 15 C -0.16 -2.40 6.77 -24.58 -0.17 -2.57 16 16 C 0.10 1.41 6.52 -2.53 -0.02 1.40 16 17 N -0.60 -9.05 3.06 -166.41 -0.51 -9.56 16 18 C 0.56 8.34 6.16 -15.01 -0.09 8.25 16 19 O -0.56 -9.66 11.92 5.11 0.06 -9.60 16 20 C -0.28 -3.42 9.23 -39.27 -0.36 -3.78 16 21 C 0.04 0.46 9.76 -39.21 -0.38 0.07 16 22 C 0.01 0.08 5.95 -83.90 -0.50 -0.42 16 23 C -0.15 -1.72 10.86 -38.98 -0.42 -2.14 16 24 C -0.22 -2.50 10.81 -39.98 -0.43 -2.93 16 25 C 0.02 0.25 11.90 -16.79 -0.20 0.05 16 26 N -0.51 -6.96 4.51 -10.56 -0.05 -7.01 16 27 H 0.42 6.13 6.14 -40.82 -0.25 5.88 16 28 H 0.05 0.90 7.14 -51.93 -0.37 0.53 16 29 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 30 H 0.05 0.91 6.65 -51.93 -0.35 0.57 16 31 H 0.36 7.99 3.68 -40.82 -0.15 7.84 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.07 0.77 7.02 -51.93 -0.36 0.41 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.13 1.35 6.69 -52.48 -0.35 1.00 16 38 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -31.56 329.93 -8.32 -39.88 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -5.65 Total: 14.49 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.99 Total: -6.16 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.01 Total: -60.26 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.06 Total: -9.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.56 -8.32 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986187441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.346 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds