Wall clock time and date at job start Tue Mar 31 2020 06:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.87141 * 2 1 4 4 C 1.54320 * 109.88728 * 238.98734 * 2 1 3 5 5 H 1.09006 * 110.71755 * 336.77514 * 4 2 1 6 6 N 1.46494 * 110.72272 * 99.86409 * 4 2 1 7 7 C 1.36936 * 120.00340 * 202.55839 * 6 4 2 8 8 H 1.07995 * 119.99718 * 0.02562 * 7 6 4 9 9 C 1.38818 * 119.99940 * 179.97438 * 7 6 4 10 10 N 1.31610 * 120.00158 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99644 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46992 * 270.00246 * 11 9 7 13 13 H 1.48502 * 109.47095 * 30.00353 * 11 9 7 14 14 H 1.48500 * 109.46682 * 150.00633 * 11 9 7 15 15 C 1.55154 * 103.10487 * 218.32076 * 4 2 1 16 16 C 1.55128 * 101.48566 * 35.27931 * 15 4 2 17 17 N 1.47020 * 110.01209 * 121.09672 * 2 1 3 18 18 C 1.34776 * 125.64996 * 298.46612 * 17 2 1 19 19 O 1.21777 * 120.00213 * 0.02562 * 18 17 2 20 20 C 1.41525 * 119.99910 * 179.97438 * 18 17 2 21 21 C 1.35614 * 120.00082 * 186.56707 * 20 18 17 22 22 C 1.41684 * 119.99673 * 8.11157 * 21 20 18 23 23 C 1.38283 * 126.25291 * 217.66406 * 22 21 20 24 24 C 1.39792 * 107.07188 * 179.88202 * 23 22 21 25 25 C 1.35504 * 107.90946 * 0.38626 * 24 23 22 26 26 N 1.35752 * 108.91170 * 359.75881 * 25 24 23 27 27 H 0.96995 * 125.69000 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.46600 * 181.01597 * 1 2 3 29 29 H 1.08998 * 109.47728 * 301.00997 * 1 2 3 30 30 H 1.08993 * 109.47740 * 61.01600 * 1 2 3 31 31 H 0.97005 * 120.00111 * 22.56392 * 6 4 2 32 32 H 0.97004 * 120.00236 * 179.97438 * 10 9 7 33 33 H 1.08999 * 111.00426 * 153.48168 * 15 4 2 34 34 H 1.08994 * 111.00170 * 277.33764 * 15 4 2 35 35 H 1.08998 * 110.41979 * 204.29167 * 16 15 4 36 36 H 1.09007 * 110.20410 * 82.04202 * 16 15 4 37 37 H 1.08001 * 119.99603 * 6.57931 * 20 18 17 38 38 H 1.07993 * 120.00437 * 188.10582 * 21 20 18 39 39 H 1.07995 * 126.46529 * 0.02562 * 23 22 21 40 40 H 1.07998 * 126.04068 * 180.11036 * 24 23 22 41 41 H 1.07996 * 125.54046 * 179.76022 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2437 5 1 1.3050 -1.4433 -1.6205 6 7 2.4520 0.1993 -2.2886 7 6 2.5021 -0.2050 -3.5959 8 1 2.2485 -1.2218 -3.8568 9 6 2.8779 0.6925 -4.5860 10 7 3.1864 1.9319 -4.2682 11 14 2.9455 0.1412 -6.3696 12 1 4.3017 -0.3810 -6.6751 13 1 1.9406 -0.9286 -6.5954 14 1 2.6481 1.2950 -7.2559 15 6 3.2894 -1.5134 -0.6988 16 6 2.8197 -1.8769 0.7342 17 7 2.0331 -0.7135 1.1829 18 6 1.8114 -0.3625 2.4652 19 8 1.1423 0.6225 2.7199 20 6 2.3554 -1.1395 3.5156 21 6 2.0245 -0.8668 4.8022 22 6 1.0075 0.0776 5.0872 23 6 1.0034 0.9852 6.1305 24 6 -0.1831 1.7178 6.0325 25 6 -0.8728 1.2527 4.9629 26 7 -0.1601 0.2555 4.3794 27 1 -0.4287 -0.2479 3.5951 28 1 -0.3633 -1.0276 0.0182 29 1 -0.3634 0.5294 0.8807 30 1 -0.3634 0.4979 -0.8989 31 1 2.6795 1.1127 -2.0543 32 1 3.4493 2.5589 -4.9600 33 1 3.4847 -2.4094 -1.2880 34 1 4.1674 -0.8682 -0.6690 35 1 3.6780 -2.0297 1.3885 36 1 2.1957 -2.7704 0.7106 37 1 3.0341 -1.9494 3.2925 38 1 2.5361 -1.3695 5.6095 39 1 1.7729 1.1067 6.8785 40 1 -0.4967 2.5110 6.6950 41 1 -1.8333 1.6163 4.6289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986187447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:35 Heat of formation + Delta-G solvation = 69.871834 kcal Electronic energy + Delta-G solvation = -22992.061308 eV Core-core repulsion = 19681.539447 eV Total energy + Delta-G solvation = -3310.521861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20272 -39.83704 -37.55740 -34.16046 -33.77429 -31.69551 -30.94573 -30.75203 -29.38719 -27.93059 -25.26256 -24.21635 -23.02601 -21.96625 -20.53211 -20.24539 -19.92016 -18.80309 -17.59042 -17.28188 -16.55657 -15.76774 -14.86691 -14.74504 -14.36099 -14.00525 -13.81013 -13.60774 -13.40632 -13.28330 -13.20327 -12.86439 -12.61748 -12.17240 -12.12451 -11.95870 -11.91859 -11.58932 -11.20908 -11.06987 -10.87484 -10.62423 -10.29401 -10.06521 -9.92148 -9.80321 -9.61893 -8.98208 -8.70804 -8.32622 -7.56051 -7.06943 -5.84768 -3.15535 0.71912 2.67527 3.07002 3.23881 3.38470 3.43783 3.45676 3.49687 3.58905 4.51706 4.73789 4.92404 5.00551 5.17986 5.26827 5.30521 5.39491 5.44668 5.48600 5.56817 5.57904 5.62435 5.73383 5.83952 5.95613 6.01547 6.05705 6.10385 6.25095 6.33123 6.38045 6.40184 6.50966 6.56754 6.72957 6.88360 7.05063 7.23164 7.62051 7.72171 7.76643 8.31898 8.35896 9.43815 9.98249 10.32858 11.37339 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.003404 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.214889 B = 8224.807452 C = 8664.146522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 H 0.076 0.924 4 C 0.176 3.824 5 H 0.065 0.935 6 N -0.715 5.715 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.281 1.281 14 H -0.291 1.291 15 C -0.156 4.156 16 C 0.098 3.902 17 N -0.602 5.602 18 C 0.550 3.450 19 O -0.547 6.547 20 C -0.238 4.238 21 C 0.017 3.983 22 C 0.017 3.983 23 C -0.161 4.161 24 C -0.219 4.219 25 C 0.014 3.986 26 N -0.496 5.496 27 H 0.415 0.585 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.386 0.614 32 H 0.257 0.743 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -8.157 18.780 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 H 0.094 0.906 4 C 0.064 3.936 5 H 0.083 0.917 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.207 1.207 14 H -0.217 1.217 15 C -0.198 4.198 16 C -0.025 4.025 17 N -0.335 5.335 18 C 0.343 3.657 19 O -0.428 6.428 20 C -0.260 4.260 21 C -0.004 4.004 22 C -0.096 4.096 23 C -0.187 4.187 24 C -0.243 4.243 25 C -0.124 4.124 26 N -0.088 5.088 27 H 0.255 0.745 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.220 0.780 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.745 -7.783 18.600 20.714 hybrid contribution 0.319 -0.165 -1.430 1.474 sum -4.426 -7.947 17.170 19.431 Atomic orbital electron populations 1.22017 0.95058 1.01313 1.02578 1.21888 0.94235 0.97009 0.84656 0.90560 1.21235 0.93531 0.91582 0.87210 0.91734 1.42352 1.80390 1.10346 1.02408 1.19201 1.39191 0.95953 0.83279 0.91008 1.24772 1.01963 0.95715 0.98159 1.69662 1.51802 1.03711 1.32497 0.86179 0.77715 0.77333 0.84858 1.21636 1.20687 1.21718 1.23615 1.01437 1.01741 0.92985 1.22430 0.94646 0.88343 0.97128 1.48594 1.51427 1.28261 1.05198 1.16896 0.81230 0.85594 0.81970 1.90890 1.40806 1.28241 1.82884 1.22126 1.06774 1.03727 0.93384 1.20789 0.91812 0.91608 0.96161 1.17958 0.91092 1.03972 0.96553 1.21251 0.99105 0.99116 0.99190 1.20668 0.97179 1.04920 1.01521 1.21894 0.99301 0.93751 0.97451 1.42277 1.15310 1.28075 1.23179 0.74544 0.93237 0.92327 0.91126 0.77993 0.93331 0.90542 0.90677 0.91249 0.91767 0.85182 0.84102 0.84827 0.85077 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.10 37.16 0.34 -2.10 16 2 C 0.13 2.20 3.21 -66.96 -0.21 1.98 16 3 H 0.08 1.55 7.70 -51.93 -0.40 1.15 16 4 C 0.18 3.33 3.12 -66.10 -0.21 3.12 16 5 H 0.06 1.22 7.81 -51.93 -0.41 0.81 16 6 N -0.71 -17.28 5.24 -51.66 -0.27 -17.55 16 7 C -0.25 -6.55 9.97 -15.06 -0.15 -6.70 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 11 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 C -0.16 -2.52 6.79 -24.47 -0.17 -2.69 16 16 C 0.10 1.25 6.53 -2.41 -0.02 1.24 16 17 N -0.60 -9.04 3.07 -166.28 -0.51 -9.56 16 18 C 0.55 8.20 6.86 -15.01 -0.10 8.10 16 19 O -0.55 -9.47 10.66 5.12 0.05 -9.42 16 20 C -0.24 -2.74 9.37 -39.27 -0.37 -3.11 16 21 C 0.02 0.18 9.96 -39.21 -0.39 -0.21 16 22 C 0.02 0.22 5.37 -83.90 -0.45 -0.24 16 23 C -0.16 -2.01 10.86 -38.98 -0.42 -2.43 16 24 C -0.22 -2.68 10.81 -39.98 -0.43 -3.11 16 25 C 0.01 0.17 11.90 -16.79 -0.20 -0.03 16 26 N -0.50 -6.42 3.91 -10.56 -0.04 -6.46 16 27 H 0.41 5.26 7.30 -40.82 -0.30 4.96 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.95 6.90 -51.93 -0.36 0.59 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.39 10.14 7.53 -40.82 -0.31 9.84 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 0.75 7.04 -51.93 -0.37 0.39 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.13 1.18 6.69 -52.49 -0.35 0.83 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -31.56 336.20 -8.72 -40.27 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -5.84 Total: 14.24 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.88 Total: -6.53 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.10 Total: -60.44 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.05 Total: -9.42 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.56 -8.72 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986187447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.145 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds