Wall clock time and date at job start Tue Mar 31 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.00145 * 2 1 4 4 C 1.54330 * 109.99256 * 238.95853 * 2 1 3 5 5 H 1.09001 * 110.85029 * 100.20133 * 4 2 1 6 6 N 1.46494 * 110.51903 * 336.97967 * 4 2 1 7 7 C 1.36940 * 120.00142 * 157.03079 * 6 4 2 8 8 H 1.07998 * 119.99745 * 359.97438 * 7 6 4 9 9 C 1.38819 * 119.99783 * 180.02562 * 7 6 4 10 10 N 1.31614 * 120.00226 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99612 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47362 * 59.99814 * 11 9 7 13 13 H 1.48499 * 109.46834 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47359 * 299.99577 * 11 9 7 15 15 C 1.55166 * 103.02210 * 218.66482 * 4 2 1 16 16 C 1.54914 * 101.57665 * 35.30921 * 15 4 2 17 17 N 1.47028 * 109.88075 * 121.09549 * 2 1 3 18 18 C 1.34778 * 125.64398 * 298.39642 * 17 2 1 19 19 O 1.21775 * 120.00228 * 359.71359 * 18 17 2 20 20 C 1.41522 * 119.99800 * 179.71993 * 18 17 2 21 21 C 1.35619 * 119.99979 * 180.02562 * 20 18 17 22 22 C 1.41675 * 119.99904 * 179.97438 * 21 20 18 23 23 C 1.38281 * 126.25868 * 179.97438 * 22 21 20 24 24 C 1.39786 * 107.07785 * 179.75170 * 23 22 21 25 25 C 1.35503 * 107.90837 * 0.41428 * 24 23 22 26 26 N 1.35754 * 108.91189 * 359.58062 * 25 24 23 27 27 H 0.97003 * 125.69102 * 180.26182 * 26 25 24 28 28 H 1.08996 * 109.47525 * 306.15421 * 1 2 3 29 29 H 1.09000 * 109.47094 * 66.15921 * 1 2 3 30 30 H 1.09006 * 109.47032 * 186.15674 * 1 2 3 31 31 H 0.97000 * 120.00237 * 337.02162 * 6 4 2 32 32 H 0.96999 * 120.00428 * 179.97438 * 10 9 7 33 33 H 1.08998 * 111.00376 * 277.23437 * 15 4 2 34 34 H 1.08994 * 111.03640 * 153.39502 * 15 4 2 35 35 H 1.09003 * 110.36515 * 204.14829 * 16 15 4 36 36 H 1.09002 * 110.36377 * 81.83027 * 16 15 4 37 37 H 1.08002 * 119.99698 * 359.97438 * 20 18 17 38 38 H 1.07998 * 119.99853 * 359.97438 * 21 20 18 39 39 H 1.07997 * 126.45950 * 0.02562 * 23 22 21 40 40 H 1.07996 * 126.04333 * 180.26478 * 24 23 22 41 41 H 1.08001 * 125.54419 * 179.84924 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2426 5 1 2.3598 -0.0451 -2.0191 6 7 1.0466 -1.6790 -1.7493 7 6 1.0845 -2.0864 -3.0561 8 1 1.8597 -1.7209 -3.7133 9 6 0.1261 -2.9684 -3.5363 10 7 -0.8188 -3.4134 -2.7355 11 14 0.1775 -3.5235 -5.3192 12 1 1.4653 -4.2130 -5.5860 13 1 -0.9476 -4.4570 -5.5795 14 1 0.0553 -2.3413 -6.2095 15 6 3.2864 -1.5184 -0.6913 16 6 2.8099 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1840 18 6 1.8072 -0.3620 2.4657 19 8 1.1447 0.6279 2.7190 20 6 2.3435 -1.1426 3.5174 21 6 2.1189 -0.7886 4.8072 22 6 2.6553 -1.5704 5.8599 23 6 2.5084 -1.3302 7.2138 24 6 3.1915 -2.3468 7.8876 25 6 3.7396 -3.1670 6.9587 26 7 3.4182 -2.7084 5.7221 27 1 3.6820 -3.1145 4.8816 28 1 -0.3634 0.6062 0.8297 29 1 -0.3633 0.4154 -0.9400 30 1 -0.3633 -1.0218 0.1102 31 1 0.3502 -2.0071 -1.1591 32 1 -1.4888 -4.0293 -3.0711 33 1 4.1670 -0.8769 -0.6578 34 1 3.4814 -2.4156 -1.2787 35 1 3.6655 -2.0412 1.3935 36 1 2.1801 -2.7718 0.7116 37 1 2.9308 -2.0207 3.2927 38 1 1.5312 0.0892 5.0317 39 1 1.9645 -0.5138 7.6654 40 1 3.2705 -2.4573 8.9589 41 1 4.3319 -4.0455 7.1681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986187449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:38 Heat of formation + Delta-G solvation = 49.227858 kcal Electronic energy + Delta-G solvation = -22511.250607 eV Core-core repulsion = 19199.833556 eV Total energy + Delta-G solvation = -3311.417051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32826 -39.97463 -37.58494 -33.98495 -33.86714 -31.61650 -31.30656 -30.77622 -29.25681 -28.10814 -25.21623 -24.24615 -23.45115 -21.99416 -20.82899 -20.46460 -19.43664 -18.26478 -17.88710 -17.41577 -16.49931 -16.02673 -14.96868 -14.67768 -14.49673 -14.16867 -14.01831 -13.85401 -13.69904 -13.23916 -12.98136 -12.67443 -12.60871 -12.34288 -12.23332 -12.01037 -11.71707 -11.29526 -10.99315 -10.93249 -10.76114 -10.63658 -10.39011 -10.25036 -10.05945 -9.64386 -9.53946 -9.22472 -8.96951 -8.30579 -7.80259 -7.04366 -5.83150 -3.12833 0.60116 2.33414 2.84940 2.97645 3.38767 3.40040 3.44809 3.45579 3.67425 4.53221 4.72188 4.79519 4.93706 5.06954 5.10172 5.15906 5.22650 5.41931 5.47519 5.58871 5.64188 5.72999 5.76513 5.85053 5.88379 6.00531 6.07477 6.13195 6.24783 6.36996 6.43358 6.53307 6.63421 6.67226 6.74786 6.77735 6.92284 7.03010 7.21552 7.64192 7.91101 8.35030 8.49247 9.46663 10.02287 10.37537 11.38987 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.003200 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.070053 B = 8747.345198 C = 9152.691425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.127 3.873 3 H 0.070 0.930 4 C 0.171 3.829 5 H 0.069 0.931 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.160 4.160 16 C 0.106 3.894 17 N -0.605 5.605 18 C 0.563 3.437 19 O -0.556 6.556 20 C -0.231 4.231 21 C 0.016 3.984 22 C 0.011 3.989 23 C -0.147 4.147 24 C -0.208 4.208 25 C 0.011 3.989 26 N -0.544 5.544 27 H 0.417 0.583 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.388 0.612 32 H 0.257 0.743 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.533 1.466 17.192 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 H 0.088 0.912 4 C 0.059 3.941 5 H 0.087 0.913 6 N -0.356 5.356 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.201 4.201 16 C -0.017 4.017 17 N -0.337 5.337 18 C 0.356 3.644 19 O -0.438 6.438 20 C -0.253 4.253 21 C -0.005 4.005 22 C -0.100 4.100 23 C -0.173 4.173 24 C -0.233 4.233 25 C -0.125 4.125 26 N -0.138 5.138 27 H 0.255 0.745 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.204 1.888 17.032 19.944 hybrid contribution 0.035 -0.991 -1.196 1.554 sum 10.239 0.897 15.835 18.879 Atomic orbital electron populations 1.21893 0.94206 1.02517 1.01871 1.21968 0.95437 0.95607 0.84704 0.91190 1.21213 0.89092 0.91629 0.92128 0.91324 1.42551 1.30960 1.51979 1.10137 1.19197 1.09779 1.21492 0.87102 0.91096 1.24749 0.97720 1.00174 0.97981 1.69649 1.17030 1.36412 1.34743 0.86266 0.76901 0.78196 0.84772 1.21285 1.21739 1.21216 1.23516 0.99294 1.02375 0.94920 1.22284 0.94339 0.88887 0.96163 1.48572 1.51915 1.28139 1.05114 1.16514 0.80894 0.85108 0.81863 1.90795 1.41184 1.28146 1.83668 1.21838 1.07053 1.02868 0.93494 1.20819 0.93018 0.96437 0.90213 1.18329 1.04396 0.92287 0.94962 1.21516 1.03547 1.00988 0.91202 1.20875 1.05198 0.98028 0.99152 1.22051 1.05023 1.01840 0.83540 1.42224 1.41005 1.22027 1.08589 0.74504 0.92754 0.91289 0.91966 0.77510 0.93361 0.92094 0.89453 0.92068 0.91140 0.86846 0.83257 0.83837 0.84273 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.21 37.16 0.31 -2.56 16 2 C 0.13 2.29 3.42 -66.95 -0.23 2.06 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.17 3.26 3.48 -66.09 -0.23 3.03 16 5 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 6 N -0.71 -16.90 4.59 -51.65 -0.24 -17.14 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 11 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C -0.16 -2.57 6.77 -24.57 -0.17 -2.74 16 16 C 0.11 1.59 6.46 -2.53 -0.02 1.57 16 17 N -0.60 -10.11 3.06 -166.42 -0.51 -10.62 16 18 C 0.56 9.49 7.40 -15.01 -0.11 9.38 16 19 O -0.56 -10.95 15.25 5.12 0.08 -10.87 16 20 C -0.23 -3.03 8.90 -39.27 -0.35 -3.38 16 21 C 0.02 0.19 9.40 -39.21 -0.37 -0.18 16 22 C 0.01 0.11 6.74 -83.91 -0.57 -0.45 16 23 C -0.15 -1.46 10.86 -38.99 -0.42 -1.88 16 24 C -0.21 -1.79 10.81 -39.98 -0.43 -2.23 16 25 C 0.01 0.08 11.90 -16.79 -0.20 -0.12 16 26 N -0.54 -4.71 5.94 -10.56 -0.06 -4.77 16 27 H 0.42 2.79 7.87 -40.82 -0.32 2.47 16 28 H 0.05 1.06 7.07 -51.93 -0.37 0.69 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.33 6.52 -51.93 -0.34 0.99 16 31 H 0.39 9.93 5.69 -40.82 -0.23 9.70 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.06 0.73 7.12 -51.93 -0.37 0.36 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.11 1.22 5.61 -52.49 -0.29 0.93 16 38 H 0.15 1.83 7.46 -52.49 -0.39 1.44 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -31.91 339.07 -8.62 -40.53 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.66 Total: 12.09 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -3.03 Total: -4.46 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.09 Total: -59.12 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.91 -8.62 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986187449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.756 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds