Wall clock time and date at job start Tue Mar 31 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.29236 * 2 1 4 4 C 1.54011 * 110.32519 * 122.12862 * 2 1 3 5 5 N 1.47484 * 107.08104 * 117.58502 * 4 2 1 6 6 C 1.34778 * 127.02865 * 205.41206 * 5 4 2 7 7 O 1.21515 * 119.99785 * 173.86757 * 6 5 4 8 8 C 1.48147 * 120.00361 * 353.86228 * 6 5 4 9 9 C 1.39819 * 120.92208 * 350.25005 * 8 6 5 10 10 C 1.38144 * 118.99984 * 179.75016 * 9 8 6 11 11 N 1.31811 * 120.90047 * 0.54483 * 10 9 8 12 12 C 1.31819 * 122.04245 * 359.73270 * 11 10 9 13 13 C 1.38144 * 120.90015 * 359.97438 * 12 11 10 14 14 C 1.48119 * 105.93366 * 25.44954 * 5 4 2 15 15 C 1.54610 * 110.32852 * 237.74910 * 2 1 3 16 16 H 1.09008 * 110.73744 * 337.59919 * 15 2 1 17 17 C 1.52994 * 110.74156 * 100.92190 * 15 2 1 18 18 N 1.46503 * 109.47669 * 185.00119 * 17 15 2 19 19 C 1.36936 * 120.00247 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99817 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99511 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00380 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99455 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47520 * 89.99947 * 23 21 19 25 25 H 1.48498 * 109.47034 * 210.00111 * 23 21 19 26 26 H 1.48504 * 109.47569 * 329.99997 * 23 21 19 27 27 H 1.09002 * 109.47044 * 299.32599 * 1 2 3 28 28 H 1.08997 * 109.47041 * 59.32314 * 1 2 3 29 29 H 1.08994 * 109.47370 * 179.32616 * 1 2 3 30 30 H 1.08992 * 109.91288 * 236.94762 * 4 2 1 31 31 H 1.08998 * 109.91213 * 358.22480 * 4 2 1 32 32 H 1.08001 * 120.49809 * 0.02562 * 9 8 6 33 33 H 1.08001 * 119.55041 * 180.27331 * 10 9 8 34 34 H 1.08005 * 119.54515 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.50048 * 180.02562 * 13 12 11 36 36 H 1.08998 * 110.66302 * 79.14876 * 14 5 4 37 37 H 1.08997 * 110.65579 * 202.10239 * 14 5 4 38 38 H 1.09001 * 109.47296 * 305.00087 * 17 15 2 39 39 H 1.09007 * 109.47209 * 64.99940 * 17 15 2 40 40 H 0.97000 * 119.99476 * 0.02562 * 18 17 15 41 41 H 0.97006 * 120.00148 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0224 0.0000 4 6 2.0650 -0.7681 1.2230 5 7 2.8276 -1.9217 0.7105 6 6 3.0623 -3.0867 1.3463 7 8 3.6141 -3.9976 0.7613 8 6 2.6476 -3.2566 2.7583 9 6 2.1983 -2.1675 3.5113 10 6 1.8165 -2.3721 4.8231 11 7 1.8817 -3.5705 5.3680 12 6 2.3045 -4.6225 4.6955 13 6 2.7003 -4.5095 3.3768 14 6 3.2836 -1.5377 -0.6454 15 6 2.0671 -0.7737 -1.2261 16 1 1.3174 -1.4701 -1.6018 17 6 2.5096 0.1936 -2.3259 18 7 2.9004 -0.5659 -3.5161 19 6 3.3345 0.0919 -4.6360 20 1 3.3891 1.1704 -4.6417 21 6 3.7053 -0.6279 -5.7636 22 7 3.6392 -1.9423 -5.7565 23 14 4.2980 0.2693 -7.2910 24 1 5.7712 0.4435 -7.2225 25 1 3.9489 -0.5233 -8.4973 26 1 3.6452 1.6009 -7.3677 27 1 -0.3633 0.5033 0.8960 28 1 -0.3633 0.5243 -0.8838 29 1 -0.3634 -1.0275 -0.0121 30 1 2.7180 -0.1226 1.8102 31 1 1.2334 -1.1155 1.8360 32 1 2.1463 -1.1820 3.0726 33 1 1.4638 -1.5380 5.4114 34 1 2.3412 -5.5861 5.1820 35 1 3.0452 -5.3757 2.8318 36 1 4.1553 -0.8859 -0.5878 37 1 3.5053 -2.4228 -1.2416 38 1 1.6852 0.8615 -2.5756 39 1 3.3585 0.7800 -1.9741 40 1 2.8510 -1.5346 -3.5111 41 1 3.8987 -2.4453 -6.5443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754809708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:51 Heat of formation + Delta-G solvation = 29.915313 kcal Electronic energy + Delta-G solvation = -22624.690212 eV Core-core repulsion = 19312.435706 eV Total energy + Delta-G solvation = -3312.254506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98377 -39.57775 -37.92627 -34.82651 -33.35349 -32.55039 -31.67013 -31.33125 -29.13743 -26.93268 -25.93419 -24.38951 -23.63567 -23.00785 -21.29714 -20.21147 -20.01721 -17.87942 -17.00517 -16.83493 -16.20228 -15.96358 -15.52664 -15.12296 -14.67499 -14.38733 -14.13862 -14.00562 -13.92829 -13.50777 -13.32394 -13.03332 -12.95951 -12.45810 -12.32389 -11.96059 -11.79334 -11.30620 -11.12037 -10.87595 -10.62623 -10.53879 -10.44068 -10.31155 -10.14904 -10.02170 -9.69574 -9.66829 -9.50330 -8.90168 -8.73948 -6.94719 -5.76985 -3.06760 0.46765 0.77360 2.73116 2.77850 3.43200 3.47981 3.50068 3.58113 4.08622 4.12248 4.38626 4.45704 4.56163 4.67422 4.74099 4.75797 4.81501 5.14759 5.20135 5.22855 5.41448 5.42390 5.45229 5.51513 5.55902 5.67636 5.71226 5.76385 5.89716 5.98934 6.06129 6.11405 6.13327 6.28057 6.34938 6.40235 6.66696 6.78800 7.41970 7.57945 7.68415 7.99366 8.40965 9.52297 10.09023 10.43187 11.45551 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.003308 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.939981 B = 8462.049223 C = 9175.187184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.090 0.910 4 C 0.091 3.909 5 N -0.612 5.612 6 C 0.571 3.429 7 O -0.526 6.526 8 C -0.079 4.079 9 C -0.166 4.166 10 C 0.093 3.907 11 N -0.474 5.474 12 C 0.094 3.906 13 C -0.117 4.117 14 C 0.114 3.886 15 C -0.102 4.102 16 H 0.085 0.915 17 C 0.165 3.835 18 N -0.733 5.733 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.148 0.852 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 1.476 21.989 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.031 4.031 5 N -0.345 5.345 6 C 0.359 3.641 7 O -0.402 6.402 8 C -0.090 4.090 9 C -0.186 4.186 10 C -0.064 4.064 11 N -0.183 5.183 12 C -0.063 4.063 13 C -0.138 4.138 14 C -0.007 4.007 15 C -0.121 4.121 16 H 0.103 0.897 17 C 0.037 3.963 18 N -0.378 5.378 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.218 0.782 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.839 0.916 22.449 23.214 hybrid contribution 0.607 0.281 -1.776 1.897 sum -5.232 1.197 20.673 21.358 Atomic orbital electron populations 1.21844 0.93994 1.02056 1.02083 1.22145 0.96509 0.99822 0.93645 0.89149 1.22717 0.95570 0.87573 0.97282 1.48706 1.52908 1.14276 1.18606 1.17809 0.79619 0.81247 0.85430 1.90821 1.43003 1.39314 1.67111 1.20395 0.99525 0.94795 0.94279 1.23325 0.98255 1.01058 0.95945 1.22797 0.96215 0.94897 0.92456 1.67549 1.12263 0.99686 1.38817 1.22806 0.94652 0.97767 0.91057 1.22358 0.97551 0.97776 0.96069 1.22673 0.96963 1.00373 0.80733 1.22582 0.96961 0.97882 0.94692 0.89661 1.20624 0.96608 0.92695 0.86354 1.42376 1.79230 1.05974 1.10176 1.19197 1.36111 0.91261 0.90805 0.91170 1.24754 1.02293 0.95488 0.98335 1.69659 1.54161 1.04540 1.29559 0.86196 0.78543 0.78483 0.82975 1.21704 1.21770 1.20773 0.92647 0.91657 0.92622 0.90860 0.89761 0.82160 0.82162 0.82009 0.83418 0.90333 0.88971 0.95834 0.96063 0.78194 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.89 37.16 0.33 -1.02 16 2 C -0.10 -1.08 3.17 -89.25 -0.28 -1.37 16 3 H 0.09 0.88 7.85 -51.93 -0.41 0.47 16 4 C 0.09 0.88 4.66 -2.98 -0.01 0.86 16 5 N -0.61 -8.29 3.29 -170.76 -0.56 -8.85 16 6 C 0.57 8.54 7.84 -12.19 -0.10 8.45 16 7 O -0.53 -9.93 16.68 5.35 0.09 -9.84 16 8 C -0.08 -0.93 5.89 -104.65 -0.62 -1.55 16 9 C -0.17 -1.50 8.45 -39.02 -0.33 -1.83 16 10 C 0.09 0.79 11.17 -17.59 -0.20 0.59 16 11 N -0.47 -4.79 10.34 -13.31 -0.14 -4.93 16 12 C 0.09 0.87 11.17 -17.59 -0.20 0.67 16 13 C -0.12 -1.25 9.68 -39.03 -0.38 -1.63 16 14 C 0.11 1.80 6.48 -2.13 -0.01 1.79 16 15 C -0.10 -1.53 2.62 -88.75 -0.23 -1.76 16 16 H 0.09 1.41 7.86 -51.92 -0.41 1.00 16 17 C 0.17 3.09 5.58 -4.04 -0.02 3.07 16 18 N -0.73 -18.14 5.52 -59.91 -0.33 -18.47 16 19 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.07 0.56 7.44 -51.93 -0.39 0.17 16 31 H 0.08 0.68 5.52 -51.93 -0.29 0.39 16 32 H 0.16 1.13 3.67 -52.49 -0.19 0.93 16 33 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.15 1.54 7.77 -52.49 -0.41 1.13 16 36 H 0.08 1.23 7.94 -51.93 -0.41 0.82 16 37 H 0.09 1.74 7.81 -51.93 -0.41 1.34 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.40 7.99 -51.93 -0.42 -0.02 16 40 H 0.38 10.15 7.67 -40.82 -0.31 9.84 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -33.86 337.18 -8.17 -42.03 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.72 Total: 6.26 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.29 Total: -1.03 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.31 Total: -59.83 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.86 -8.17 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754809708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.944 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds