Wall clock time and date at job start Tue Mar 31 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.29236 * 2 1 4 4 C 1.54011 * 110.32519 * 122.12862 * 2 1 3 5 5 N 1.47484 * 107.08104 * 117.58502 * 4 2 1 6 6 C 1.34778 * 127.02865 * 205.41206 * 5 4 2 7 7 O 1.21515 * 119.99785 * 173.86757 * 6 5 4 8 8 C 1.48147 * 120.00361 * 353.86228 * 6 5 4 9 9 C 1.39819 * 120.92208 * 350.25005 * 8 6 5 10 10 C 1.38144 * 118.99984 * 179.75016 * 9 8 6 11 11 N 1.31811 * 120.90047 * 0.54483 * 10 9 8 12 12 C 1.31819 * 122.04245 * 359.73270 * 11 10 9 13 13 C 1.38144 * 120.90015 * 359.97438 * 12 11 10 14 14 C 1.48119 * 105.93366 * 25.44954 * 5 4 2 15 15 C 1.54610 * 110.32852 * 237.74910 * 2 1 3 16 16 H 1.09008 * 110.73744 * 337.59919 * 15 2 1 17 17 C 1.52994 * 110.74156 * 100.92190 * 15 2 1 18 18 N 1.46503 * 109.47669 * 185.00119 * 17 15 2 19 19 C 1.36936 * 120.00247 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99817 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99511 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00380 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99455 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47520 * 89.99947 * 23 21 19 25 25 H 1.48498 * 109.47034 * 210.00111 * 23 21 19 26 26 H 1.48504 * 109.47569 * 329.99997 * 23 21 19 27 27 H 1.09002 * 109.47044 * 299.32599 * 1 2 3 28 28 H 1.08997 * 109.47041 * 59.32314 * 1 2 3 29 29 H 1.08994 * 109.47370 * 179.32616 * 1 2 3 30 30 H 1.08992 * 109.91288 * 236.94762 * 4 2 1 31 31 H 1.08998 * 109.91213 * 358.22480 * 4 2 1 32 32 H 1.08001 * 120.49809 * 0.02562 * 9 8 6 33 33 H 1.08001 * 119.55041 * 180.27331 * 10 9 8 34 34 H 1.08005 * 119.54515 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.50048 * 180.02562 * 13 12 11 36 36 H 1.08998 * 110.66302 * 79.14876 * 14 5 4 37 37 H 1.08997 * 110.65579 * 202.10239 * 14 5 4 38 38 H 1.09001 * 109.47296 * 305.00087 * 17 15 2 39 39 H 1.09007 * 109.47209 * 64.99940 * 17 15 2 40 40 H 0.97000 * 119.99476 * 0.02562 * 18 17 15 41 41 H 0.97006 * 120.00148 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0224 0.0000 4 6 2.0650 -0.7681 1.2230 5 7 2.8276 -1.9217 0.7105 6 6 3.0623 -3.0867 1.3463 7 8 3.6141 -3.9976 0.7613 8 6 2.6476 -3.2566 2.7583 9 6 2.1983 -2.1675 3.5113 10 6 1.8165 -2.3721 4.8231 11 7 1.8817 -3.5705 5.3680 12 6 2.3045 -4.6225 4.6955 13 6 2.7003 -4.5095 3.3768 14 6 3.2836 -1.5377 -0.6454 15 6 2.0671 -0.7737 -1.2261 16 1 1.3174 -1.4701 -1.6018 17 6 2.5096 0.1936 -2.3259 18 7 2.9004 -0.5659 -3.5161 19 6 3.3345 0.0919 -4.6360 20 1 3.3891 1.1704 -4.6417 21 6 3.7053 -0.6279 -5.7636 22 7 3.6392 -1.9423 -5.7565 23 14 4.2980 0.2693 -7.2910 24 1 5.7712 0.4435 -7.2225 25 1 3.9489 -0.5233 -8.4973 26 1 3.6452 1.6009 -7.3677 27 1 -0.3633 0.5033 0.8960 28 1 -0.3633 0.5243 -0.8838 29 1 -0.3634 -1.0275 -0.0121 30 1 2.7180 -0.1226 1.8102 31 1 1.2334 -1.1155 1.8360 32 1 2.1463 -1.1820 3.0726 33 1 1.4638 -1.5380 5.4114 34 1 2.3412 -5.5861 5.1820 35 1 3.0452 -5.3757 2.8318 36 1 4.1553 -0.8859 -0.5878 37 1 3.5053 -2.4228 -1.2416 38 1 1.6852 0.8615 -2.5756 39 1 3.3585 0.7800 -1.9741 40 1 2.8510 -1.5346 -3.5111 41 1 3.8987 -2.4453 -6.5443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754809708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:50 Heat of formation + Delta-G solvation = 6.521118 kcal Electronic energy + Delta-G solvation = -22625.704660 eV Core-core repulsion = 19312.435706 eV Total energy + Delta-G solvation = -3313.268954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.91938 -40.49870 -39.11284 -36.54144 -34.59641 -33.48806 -33.08151 -32.32170 -30.61318 -27.88796 -27.30879 -25.65779 -24.59486 -24.31707 -22.57034 -21.18982 -21.17433 -19.23886 -18.62453 -17.80961 -17.11123 -16.94259 -16.59837 -16.46824 -16.06462 -15.50692 -15.29370 -15.21198 -14.89760 -14.75939 -14.63992 -14.33393 -14.04542 -13.66166 -13.43456 -13.18717 -12.91540 -12.77495 -12.62240 -12.42290 -12.10664 -11.95561 -11.73635 -11.61153 -11.47091 -11.36127 -10.99660 -10.94302 -10.48082 -10.19906 -9.85277 -9.00723 -7.95174 -5.24702 -0.37977 0.08424 1.46653 1.48766 1.57151 1.67546 1.72130 2.55592 2.81645 3.16386 3.38641 3.45748 3.50805 3.59179 3.79156 3.84663 3.93726 4.02799 4.16945 4.18672 4.34283 4.45470 4.49854 4.54698 4.60392 4.74403 4.77449 4.79445 4.81053 4.86413 4.93939 5.05219 5.10146 5.19860 5.25639 5.34798 5.48917 5.53194 5.60219 6.26226 6.34907 6.86343 6.88677 7.32212 8.08779 8.29897 9.28555 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.003308 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.939981 B = 8462.049223 C = 9175.187184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.112 0.888 4 C 0.087 3.913 5 N -0.610 5.610 6 C 0.563 3.437 7 O -0.583 6.583 8 C -0.098 4.098 9 C -0.155 4.155 10 C 0.099 3.901 11 N -0.488 5.488 12 C 0.097 3.903 13 C -0.131 4.131 14 C 0.116 3.884 15 C -0.093 4.093 16 H 0.064 0.936 17 C 0.165 3.835 18 N -0.749 5.749 19 C -0.242 4.242 20 H 0.081 0.919 21 C -0.080 4.080 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.265 1.265 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.186 0.814 33 H 0.199 0.801 34 H 0.187 0.813 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.370 0.630 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 4.349 24.681 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.130 0.870 4 C -0.034 4.034 5 N -0.341 5.341 6 C 0.353 3.647 7 O -0.464 6.464 8 C -0.109 4.109 9 C -0.174 4.174 10 C -0.058 4.058 11 N -0.198 5.198 12 C -0.059 4.059 13 C -0.152 4.152 14 C -0.007 4.007 15 C -0.113 4.113 16 H 0.082 0.918 17 C 0.038 3.962 18 N -0.392 5.392 19 C -0.374 4.374 20 H 0.099 0.901 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.190 1.190 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.202 0.798 33 H 0.216 0.784 34 H 0.204 0.796 35 H 0.156 0.844 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.202 0.798 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.020 3.864 25.192 26.436 hybrid contribution 0.930 -0.568 -2.527 2.752 sum -6.090 3.296 22.665 23.699 Atomic orbital electron populations 1.21847 0.92780 1.01761 1.03372 1.22159 0.97441 1.00184 0.91220 0.87036 1.23090 0.96627 0.86389 0.97259 1.48749 1.52702 1.15102 1.17555 1.18435 0.78791 0.80746 0.86690 1.90782 1.45708 1.41252 1.68647 1.20261 1.01628 0.96449 0.92582 1.23534 0.96969 1.00971 0.95916 1.23430 0.94707 0.95328 0.92325 1.67646 1.12536 1.00442 1.39192 1.23139 0.93665 0.98847 0.90240 1.22419 0.98433 0.97459 0.96910 1.22442 0.97670 0.98583 0.81956 1.22398 0.96065 0.97273 0.95567 0.91798 1.20812 0.96934 0.93090 0.85335 1.42659 1.79274 1.05706 1.11543 1.19670 1.34323 0.91881 0.91540 0.90097 1.25621 1.03639 0.96226 1.01689 1.69840 1.56248 1.06216 1.30074 0.85120 0.77896 0.77794 0.78830 1.21520 1.22500 1.18965 0.89169 0.92628 0.93700 0.87309 0.87320 0.79778 0.78407 0.79587 0.84379 0.90090 0.93510 0.94950 0.95033 0.79842 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.89 71.98 0.64 -1.57 16 2 C -0.09 -1.66 3.17 -9.90 -0.03 -1.69 16 3 H 0.11 1.66 7.85 -2.39 -0.02 1.64 16 4 C 0.09 1.36 4.66 86.53 0.40 1.77 16 5 N -0.61 -16.26 3.29 -812.46 -2.67 -18.94 16 6 C 0.56 17.31 7.84 86.88 0.68 17.99 16 7 O -0.58 -23.76 16.68 -3.76 -0.06 -23.82 16 8 C -0.10 -2.23 5.89 -19.88 -0.12 -2.35 16 9 C -0.15 -2.26 8.45 22.63 0.19 -2.07 16 10 C 0.10 1.27 11.17 84.67 0.95 2.22 16 11 N -0.49 -8.46 10.34 -196.01 -2.03 -10.48 16 12 C 0.10 1.64 11.17 84.67 0.95 2.59 16 13 C -0.13 -2.81 9.68 22.63 0.22 -2.59 16 14 C 0.12 3.80 6.48 86.73 0.56 4.36 16 15 C -0.09 -2.79 2.62 -9.58 -0.03 -2.82 16 16 H 0.06 2.19 7.86 -2.38 -0.02 2.17 16 17 C 0.16 6.08 5.58 86.38 0.48 6.57 16 18 N -0.75 -37.96 5.52 -343.44 -1.90 -39.86 16 19 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 22 N -0.97 -61.27 13.06 21.65 0.28 -60.98 16 23 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.11 1.05 7.44 -2.39 -0.02 1.04 16 31 H 0.11 1.24 5.52 -2.39 -0.01 1.23 16 32 H 0.19 1.65 3.67 -2.91 -0.01 1.64 16 33 H 0.20 0.99 8.06 -2.91 -0.02 0.96 16 34 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.14 3.11 7.77 -2.91 -0.02 3.09 16 36 H 0.08 2.58 7.94 -2.39 -0.02 2.56 16 37 H 0.05 1.94 7.81 -2.39 -0.02 1.92 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.03 1.13 7.99 -2.38 -0.02 1.11 16 40 H 0.37 20.60 7.67 -92.71 -0.71 19.89 16 41 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -78.02 337.18 2.19 -75.83 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.33 Total: 24.10 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 6.20 Total: 5.60 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -6.31 Total: -130.26 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.06 Total: -23.82 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.02 2.19 -75.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754809708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.351 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds