Wall clock time and date at job start Tue Mar 31 2020 06:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46902 * 109.47080 * 2 1 4 4 C 1.46900 * 109.46793 * 240.00138 * 2 1 3 5 5 C 1.46894 * 109.47016 * 120.00328 * 2 1 3 6 6 C 1.53000 * 109.47599 * 64.51107 * 5 2 1 7 7 H 1.09010 * 109.46715 * 53.29181 * 6 5 2 8 8 C 1.50695 * 109.47606 * 173.28817 * 6 5 2 9 9 H 1.08004 * 120.00225 * 240.00547 * 8 6 5 10 10 C 1.37881 * 119.99824 * 60.00174 * 8 6 5 11 11 N 1.31510 * 119.99883 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99890 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47314 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46782 * 120.00334 * 12 10 8 15 15 H 1.48498 * 109.46874 * 239.99877 * 12 10 8 16 16 O 1.42903 * 109.47414 * 293.29455 * 6 5 2 17 17 C 1.42892 * 114.00071 * 149.99347 * 16 6 5 18 18 C 1.50709 * 109.47130 * 179.97438 * 17 16 6 19 19 C 1.38358 * 119.84679 * 89.99968 * 18 17 16 20 20 C 1.37944 * 120.15422 * 180.02562 * 19 18 17 21 21 C 1.39630 * 119.84197 * 359.97438 * 20 19 18 22 22 C 1.43202 * 120.14988 * 180.02562 * 21 20 19 23 23 N 9.44287 * 22.85238 * 158.23602 * 2 1 3 24 24 C 1.39631 * 119.70133 * 0.27962 * 21 20 19 25 25 C 1.37947 * 119.84406 * 359.48923 * 24 21 20 26 26 H 1.08996 * 109.47113 * 290.76643 * 1 2 3 27 27 H 1.08998 * 109.46660 * 50.76358 * 1 2 3 28 28 H 1.09002 * 109.47224 * 170.76005 * 1 2 3 29 29 H 1.09001 * 109.46900 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47084 * 299.99805 * 3 2 1 31 31 H 1.08997 * 109.46552 * 60.00039 * 3 2 1 32 32 H 1.08998 * 109.47070 * 299.99670 * 4 2 1 33 33 H 1.08998 * 109.47124 * 60.00304 * 4 2 1 34 34 H 1.09001 * 109.46967 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47129 * 304.51439 * 5 2 1 36 36 H 1.09001 * 109.47299 * 184.51347 * 5 2 1 37 37 H 0.97000 * 120.00367 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.47487 * 60.00302 * 17 16 6 39 39 H 1.08998 * 109.47765 * 299.99798 * 17 16 6 40 40 H 1.08001 * 119.92583 * 0.02562 * 19 18 17 41 41 H 1.07993 * 120.08061 * 179.97438 * 20 19 18 42 42 H 1.08007 * 120.07649 * 179.72220 * 24 21 20 43 43 H 1.08002 * 119.92475 * 180.23238 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1993 6 6 1.5435 -2.1641 1.1439 7 1 1.8700 -2.5983 0.1989 8 6 2.1827 -2.9099 2.2868 9 1 2.8492 -3.7360 2.0870 10 6 1.9168 -2.5376 3.5875 11 7 1.1050 -1.5320 3.8307 12 14 2.7086 -3.4625 5.0041 13 1 3.5733 -4.5439 4.4675 14 1 3.5318 -2.5246 5.8090 15 1 1.6505 -4.0538 5.8621 16 8 0.1216 -2.2621 1.2472 17 6 -0.4342 -3.3892 0.5671 18 6 -1.9311 -3.3935 0.7419 19 6 -2.7333 -2.7362 -0.1740 20 6 -4.1041 -2.7356 -0.0198 21 6 -4.6817 -3.4008 1.0635 22 6 -6.1040 -3.4049 1.2297 23 7 -7.2326 -3.4058 1.3597 24 6 -3.8659 -4.0576 1.9870 25 6 -2.4968 -4.0541 1.8179 26 1 -0.3633 0.3644 0.9609 27 1 -0.3632 0.6500 -0.7960 28 1 -0.3634 -1.0143 -0.1650 29 1 3.0488 1.3850 -0.0005 30 1 1.5954 1.8988 -0.8900 31 1 1.5954 1.8987 0.8900 32 1 1.5954 -1.7201 -1.1994 33 1 1.5954 -0.1786 -2.0894 34 1 3.0487 -0.6929 -1.1993 35 1 1.5308 -0.2276 2.0875 36 1 3.0457 -0.6231 1.2408 37 1 0.9175 -1.2703 4.7457 38 1 -0.0176 -4.3065 0.9832 39 1 -0.1923 -3.3290 -0.4940 40 1 -2.2852 -2.2225 -1.0116 41 1 -4.7290 -2.2219 -0.7352 42 1 -4.3060 -4.5702 2.8297 43 1 -1.8648 -4.5649 2.5294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205597708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:35 Heat of formation + Delta-G solvation = 115.560628 kcal Electronic energy + Delta-G solvation = -23634.836688 eV Core-core repulsion = 20378.066213 eV Total energy + Delta-G solvation = -3256.770474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.166 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.27076 -40.53987 -38.40844 -37.24369 -34.67781 -32.99177 -32.09120 -31.29856 -30.38953 -30.19854 -27.77282 -27.34869 -24.93561 -23.76190 -23.10591 -22.60699 -19.88734 -19.01800 -18.64962 -18.30920 -17.94735 -17.05834 -16.79982 -16.50387 -15.92658 -15.53665 -15.31252 -15.01923 -14.94006 -14.74508 -14.50279 -14.46901 -14.13294 -14.12657 -13.95121 -13.74849 -13.73861 -13.52471 -13.41507 -13.26064 -12.99790 -12.51993 -12.25930 -12.16505 -12.04926 -11.98824 -11.30476 -11.10595 -10.15269 -10.01077 -9.84860 -9.78006 -7.71154 -5.91604 -0.23707 0.34102 0.36647 1.79020 1.97515 2.10898 2.26304 2.29136 2.32310 2.35499 2.39969 2.83132 2.96501 3.02881 3.13199 3.18604 3.24656 3.41981 3.54706 3.66057 3.69936 3.72113 3.75751 3.76407 3.85524 3.88873 3.98490 4.19704 4.21684 4.27088 4.32085 4.40620 4.59007 4.68233 4.75549 4.87719 5.03128 5.17492 5.26702 5.33375 5.58905 5.82383 6.22301 6.29313 6.59708 6.65335 7.25064 7.92428 9.31535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.271 5.271 3 C -0.041 4.041 4 C -0.046 4.046 5 C -0.003 4.003 6 C 0.199 3.801 7 H 0.033 0.967 8 C -0.567 4.567 9 H 0.073 0.927 10 C 0.094 3.906 11 N -0.859 5.859 12 Si 0.897 3.103 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.275 1.275 16 O -0.367 6.367 17 C 0.099 3.901 18 C -0.049 4.049 19 C -0.113 4.113 20 C -0.074 4.074 21 C -0.029 4.029 22 C 0.252 3.748 23 N -0.416 5.416 24 C -0.069 4.069 25 C -0.091 4.091 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.157 0.843 36 H 0.116 0.884 37 H 0.275 0.725 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 8.983 -13.959 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.070 4.930 3 C -0.183 4.183 4 C -0.188 4.188 5 C -0.122 4.122 6 C 0.143 3.857 7 H 0.050 0.950 8 C -0.604 4.604 9 H 0.091 0.909 10 C -0.116 4.116 11 N -0.493 5.493 12 Si 0.723 3.277 13 H -0.192 1.192 14 H -0.202 1.202 15 H -0.200 1.200 16 O -0.287 6.287 17 C 0.022 3.978 18 C -0.050 4.050 19 C -0.131 4.131 20 C -0.095 4.095 21 C -0.032 4.032 22 C -0.064 4.064 23 N -0.091 5.091 24 C -0.090 4.090 25 C -0.109 4.109 26 H 0.138 0.862 27 H 0.113 0.887 28 H 0.151 0.849 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.174 0.826 36 H 0.134 0.866 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.442 9.238 -13.499 16.715 hybrid contribution 0.918 -0.597 0.827 1.372 sum 4.359 8.641 -12.671 15.945 Atomic orbital electron populations 1.24318 0.76371 1.09681 1.07696 1.46392 1.15650 1.14303 1.16623 1.23991 1.04844 0.81407 1.08013 1.24041 1.04967 1.02478 0.87274 1.24950 1.02975 0.98038 0.86205 1.19961 0.80401 0.88346 0.96966 0.94958 1.21281 1.30857 1.18166 0.90129 0.90902 1.24972 0.92927 0.94247 0.99441 1.69643 1.31865 1.25739 1.22072 0.86412 0.79734 0.80259 0.81326 1.19191 1.20220 1.20022 1.88125 1.22429 1.43319 1.74844 1.21159 0.88743 0.92951 0.94911 1.19979 0.95175 0.95527 0.94297 1.20868 0.92759 0.99842 0.99616 1.21105 0.95169 0.97241 0.95954 1.16020 0.84425 1.04018 0.98726 1.25779 0.92748 0.93910 0.93921 1.81300 1.12077 1.08149 1.07582 1.21253 0.93440 0.96742 0.97556 1.21107 0.94098 0.98588 0.97067 0.86202 0.88693 0.84854 0.86966 0.87377 0.86585 0.86321 0.87378 0.86789 0.82600 0.86614 0.91458 0.91474 0.94076 0.85466 0.85067 0.84868 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.38 7.17 60.07 0.43 0.81 16 2 N -0.27 2.83 0.05 -395.62 -0.02 2.81 16 3 C -0.04 0.51 8.00 60.07 0.48 0.99 16 4 C -0.05 0.55 7.54 60.06 0.45 1.00 16 5 C 0.00 0.02 3.53 -3.83 -0.01 0.00 16 6 C 0.20 -0.09 1.85 -27.89 -0.05 -0.14 16 7 H 0.03 -0.09 5.49 -51.92 -0.28 -0.38 16 8 C -0.57 -3.29 8.89 -34.44 -0.31 -3.60 16 9 H 0.07 0.53 7.81 -52.48 -0.41 0.12 16 10 C 0.09 0.74 5.24 -17.82 -0.09 0.65 16 11 N -0.86 -6.79 10.95 55.43 0.61 -6.19 16 12 Si 0.90 7.54 29.54 -169.99 -5.02 2.52 16 13 H -0.27 -2.41 7.11 56.52 0.40 -2.01 16 14 H -0.28 -2.54 7.11 56.52 0.40 -2.14 16 15 H -0.27 -2.70 7.11 56.52 0.40 -2.29 16 16 O -0.37 0.02 6.44 -35.23 -0.23 -0.21 16 17 C 0.10 -0.13 5.18 36.01 0.19 0.06 16 18 C -0.05 0.05 5.52 -104.53 -0.58 -0.53 16 19 C -0.11 0.34 9.68 -39.64 -0.38 -0.05 16 20 C -0.07 0.13 9.76 -39.17 -0.38 -0.25 16 21 C -0.03 -0.01 5.73 -106.93 -0.61 -0.62 16 22 C 0.25 0.71 15.33 -22.47 -0.34 0.37 16 23 N -0.42 -2.34 18.54 41.84 0.78 -1.57 16 24 C -0.07 -0.02 9.76 -39.17 -0.38 -0.40 16 25 C -0.09 -0.04 9.68 -39.64 -0.38 -0.42 16 26 H 0.12 -0.89 7.94 -51.93 -0.41 -1.30 16 27 H 0.09 -1.19 8.01 -51.93 -0.42 -1.60 16 28 H 0.13 -1.08 5.04 -51.93 -0.26 -1.34 16 29 H 0.11 -1.47 8.12 -51.93 -0.42 -1.90 16 30 H 0.11 -1.57 8.07 -51.93 -0.42 -1.99 16 31 H 0.12 -1.37 8.14 -51.93 -0.42 -1.79 16 32 H 0.12 -1.28 5.86 -51.93 -0.30 -1.59 16 33 H 0.11 -1.55 8.14 -51.93 -0.42 -1.97 16 34 H 0.11 -1.44 8.14 -51.93 -0.42 -1.86 16 35 H 0.16 -0.18 6.12 -51.93 -0.32 -0.50 16 36 H 0.12 -0.58 8.09 -51.93 -0.42 -1.00 16 37 H 0.28 2.42 8.31 -40.82 -0.34 2.08 16 38 H 0.07 0.06 8.08 -51.93 -0.42 -0.36 16 39 H 0.04 -0.18 8.02 -51.93 -0.42 -0.60 16 40 H 0.13 -0.79 8.06 -52.49 -0.42 -1.22 16 41 H 0.13 -0.45 8.06 -52.49 -0.42 -0.88 16 42 H 0.13 -0.08 8.06 -52.48 -0.42 -0.51 16 43 H 0.14 0.11 8.06 -52.49 -0.42 -0.32 16 LS Contribution 351.29 15.07 5.29 5.29 Total: 0.00 -17.62 351.29 -7.17 -24.79 By element: Atomic # 1 Polarization: -18.74 SS G_CDS: -6.60 Total: -25.33 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.98 Total: -2.12 kcal Atomic # 7 Polarization: -6.31 SS G_CDS: 1.36 Total: -4.95 kcal Atomic # 8 Polarization: 0.02 SS G_CDS: -0.23 Total: -0.21 kcal Atomic # 14 Polarization: 7.54 SS G_CDS: -5.02 Total: 2.52 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -17.62 -7.17 -24.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205597708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.348 kcal (2) G-P(sol) polarization free energy of solvation -17.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds