Wall clock time and date at job start Tue Mar 31 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00414 * 2 1 4 4 C 1.38746 * 120.05764 * 89.99146 * 3 2 1 5 5 C 1.50708 * 120.02872 * 0.02562 * 4 3 2 6 6 C 1.38126 * 119.94556 * 180.02562 * 4 3 2 7 7 C 1.38288 * 120.05387 * 0.28104 * 6 4 3 8 8 C 1.38244 * 120.10735 * 359.44975 * 7 6 4 9 9 C 1.38166 * 120.05849 * 0.54781 * 8 7 6 10 10 C 1.50703 * 120.02629 * 179.70977 * 9 8 7 11 11 N 1.46904 * 109.46607 * 260.02019 * 10 9 8 12 12 C 1.46846 * 111.00214 * 45.79185 * 11 10 9 13 13 C 1.53031 * 109.52050 * 185.83929 * 12 11 10 14 14 C 1.53120 * 109.28012 * 300.81603 * 13 12 11 15 15 C 1.50698 * 109.57820 * 177.59181 * 14 13 12 16 16 H 1.07995 * 120.00500 * 240.29409 * 15 14 13 17 17 C 1.37884 * 119.99942 * 60.28699 * 15 14 13 18 18 N 1.31518 * 119.99462 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00391 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47174 * 60.00198 * 19 17 15 21 21 H 1.48502 * 109.47591 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47277 * 300.00525 * 19 17 15 23 23 C 1.53125 * 109.15870 * 57.66257 * 14 13 12 24 24 C 1.46848 * 110.99647 * 170.00298 * 11 10 9 25 25 H 1.09008 * 109.46765 * 60.00171 * 1 2 3 26 26 H 1.09003 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47078 * 300.00807 * 1 2 3 28 28 H 1.08998 * 109.46799 * 270.01752 * 5 4 3 29 29 H 1.08995 * 109.46985 * 30.02051 * 5 4 3 30 30 H 1.08999 * 109.47152 * 150.01873 * 5 4 3 31 31 H 1.08002 * 119.97098 * 179.97438 * 6 4 3 32 32 H 1.07993 * 119.94253 * 179.69801 * 7 6 4 33 33 H 1.08007 * 119.96986 * 180.25579 * 8 7 6 34 34 H 1.08998 * 109.47212 * 20.01554 * 10 9 8 35 35 H 1.09005 * 109.47199 * 140.02460 * 10 9 8 36 36 H 1.08998 * 109.46306 * 305.85544 * 12 11 10 37 37 H 1.08996 * 109.45836 * 65.82477 * 12 11 10 38 38 H 1.09005 * 109.50415 * 180.87958 * 13 12 11 39 39 H 1.08999 * 109.54299 * 60.78152 * 13 12 11 40 40 H 1.08998 * 109.52864 * 297.75316 * 14 13 12 41 41 H 0.97003 * 119.99332 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.50635 * 182.40729 * 23 14 13 43 43 H 1.08990 * 109.53715 * 62.30344 * 23 14 13 44 44 H 1.08996 * 109.46166 * 294.17482 * 24 11 10 45 45 H 1.09007 * 109.46596 * 54.15399 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 2.3614 1.8301 1.2009 5 6 2.0205 1.1603 2.5072 6 6 2.9881 3.0610 1.1982 7 6 3.2960 3.6788 -0.0001 8 6 2.9878 3.0613 -1.1980 9 6 2.3609 1.8300 -1.2006 10 6 2.0194 1.1605 -2.5068 11 7 0.5985 1.3764 -2.8108 12 6 0.2210 2.7788 -2.5934 13 6 -1.2900 2.9361 -2.7781 14 6 -1.6747 2.4981 -4.1940 15 6 -3.1689 2.5944 -4.3639 16 1 -3.7433 1.7115 -4.6027 17 6 -3.8030 3.8096 -4.2143 18 7 -3.1035 4.8848 -3.9238 19 14 -5.6552 3.9289 -4.4241 20 1 -6.3236 3.0509 -3.4302 21 1 -6.0878 5.3339 -4.2141 22 1 -6.0269 3.4967 -5.7954 23 6 -1.2273 1.0499 -4.4110 24 6 0.2819 0.9472 -4.1790 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.0224 1.4648 2.8220 29 1 2.0466 0.0783 2.3783 30 1 2.7461 1.4534 3.2660 31 1 3.2335 3.5436 2.1327 32 1 3.7816 4.6434 -0.0001 33 1 3.2330 3.5439 -2.1326 34 1 2.6300 1.5854 -3.3035 35 1 2.2159 0.0911 -2.4293 36 1 0.4962 3.0763 -1.5816 37 1 0.7425 3.4107 -3.3122 38 1 -1.5677 3.9800 -2.6320 39 1 -1.8128 2.3153 -2.0505 40 1 -1.1831 3.1441 -4.9213 41 1 -3.5495 5.7398 -3.8189 42 1 -1.4601 0.7461 -5.4316 43 1 -1.7485 0.3984 -3.7096 44 1 0.8031 1.5878 -4.8903 45 1 0.6012 -0.0857 -4.3187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237509727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:20 Heat of formation + Delta-G solvation = -19.515916 kcal Electronic energy + Delta-G solvation = -24113.304759 eV Core-core repulsion = 20902.447098 eV Total energy + Delta-G solvation = -3210.857661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.26501 -38.02273 -36.99826 -34.37397 -32.70204 -31.41882 -30.02386 -29.76191 -27.42413 -26.52070 -25.95969 -24.34624 -22.19870 -21.82420 -21.31611 -20.27190 -18.55869 -17.41629 -16.41897 -16.20629 -15.56402 -15.37166 -14.90021 -14.40594 -14.38487 -13.84320 -13.57745 -13.46352 -13.36492 -12.95786 -12.83517 -12.46402 -12.42174 -12.15649 -11.91050 -11.79212 -11.52280 -11.24278 -11.14881 -10.93159 -10.83911 -10.70902 -10.45163 -10.20328 -9.97406 -9.59904 -9.42194 -8.96334 -8.73718 -8.51700 -8.40107 -8.27741 -7.69493 -5.96058 -4.01409 1.31756 1.37747 3.33027 3.37715 3.40434 3.54193 4.19216 4.45744 4.59032 4.78647 4.86708 5.02255 5.28240 5.34077 5.45477 5.52669 5.54678 5.60667 5.64595 5.76053 5.76533 5.78392 5.86226 5.91594 5.99682 6.11858 6.21978 6.23856 6.32170 6.34987 6.50894 6.52511 6.62941 6.64799 6.68402 6.84959 6.87136 7.08512 7.16619 7.45019 7.62538 7.69720 7.78062 7.84158 8.05817 8.17501 8.49541 9.02165 9.62860 11.10022 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019952 B = 0.004428 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.997849 B = 6322.520996 C = 6468.470703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.337 6.337 3 C 0.116 3.884 4 C -0.110 4.110 5 C -0.109 4.109 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.106 4.106 9 C -0.088 4.088 10 C 0.094 3.906 11 N -0.527 5.527 12 C 0.055 3.945 13 C -0.102 4.102 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.105 4.105 24 C 0.060 3.940 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.021 0.979 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.020 0.980 41 H 0.259 0.741 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.024 0.976 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.340 -5.384 9.134 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.254 6.254 3 C 0.071 3.929 4 C -0.110 4.110 5 C -0.166 4.166 6 C -0.132 4.132 7 C -0.142 4.142 8 C -0.125 4.125 9 C -0.089 4.089 10 C -0.033 4.033 11 N -0.252 5.252 12 C -0.073 4.073 13 C -0.140 4.140 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.143 4.143 24 C -0.067 4.067 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.101 -5.662 9.467 16.375 hybrid contribution -0.660 0.936 -0.663 1.323 sum 11.441 -4.726 8.805 15.191 Atomic orbital electron populations 1.23190 0.77889 1.02849 1.02460 1.85848 1.20650 1.24490 1.94368 1.18262 0.97045 0.86538 0.91025 1.20183 1.00636 0.95099 0.95094 1.20666 1.01445 1.01071 0.93411 1.20875 0.99647 0.94535 0.98119 1.21064 1.00914 0.99933 0.92291 1.20981 0.98909 0.94276 0.98329 1.20112 0.99169 0.94627 0.95006 1.20989 0.90010 1.00271 0.92022 1.62174 1.15063 1.22281 1.25656 1.22341 0.99608 0.86314 0.98993 1.21650 0.89615 1.03560 0.99216 1.18676 0.95466 0.89836 0.93040 1.21172 0.92418 0.93989 1.47316 0.92843 1.24963 0.97888 0.95886 0.95222 1.69874 1.35188 0.99227 1.48824 0.86711 0.86086 0.76879 0.78610 1.20330 1.21391 1.20383 1.21671 0.91991 1.00934 0.99695 1.22132 0.98622 0.98456 0.87533 0.89641 0.89773 0.94789 0.91484 0.90987 0.91799 0.86031 0.86010 0.86024 0.94649 0.89962 0.92388 0.96095 0.89084 0.94121 0.96217 0.93080 0.93196 0.92545 0.95751 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.13 101.05 1.12 1.56 16 2 O -0.34 -5.14 8.70 -19.42 -0.17 -5.31 16 3 C 0.12 1.74 5.67 -39.22 -0.22 1.52 16 4 C -0.11 -1.46 5.89 -104.47 -0.62 -2.07 16 5 C -0.11 -1.18 9.79 36.01 0.35 -0.83 16 6 C -0.11 -1.37 9.70 -39.60 -0.38 -1.75 16 7 C -0.12 -1.52 10.04 -39.56 -0.40 -1.92 16 8 C -0.11 -1.46 8.64 -39.61 -0.34 -1.80 16 9 C -0.09 -1.33 3.69 -104.47 -0.39 -1.72 16 10 C 0.09 1.45 5.07 -4.97 -0.03 1.43 16 11 N -0.53 -9.25 3.00 -236.11 -0.71 -9.96 16 12 C 0.05 1.08 4.80 -3.84 -0.02 1.06 16 13 C -0.10 -2.40 5.12 -26.65 -0.14 -2.53 16 14 C 0.05 1.19 2.16 -91.65 -0.20 1.00 16 15 C -0.51 -13.96 8.56 -34.44 -0.29 -14.25 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 18 N -0.89 -25.40 11.37 55.43 0.63 -24.77 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.11 -2.18 5.32 -26.64 -0.14 -2.32 16 24 C 0.06 1.07 5.42 -3.83 -0.02 1.05 16 25 H 0.09 1.43 6.25 -51.92 -0.32 1.10 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 30 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.12 1.55 8.04 -52.48 -0.42 1.13 16 34 H 0.04 0.52 7.94 -51.93 -0.41 0.11 16 35 H 0.08 1.24 7.85 -51.93 -0.41 0.83 16 36 H 0.06 1.12 6.03 -51.93 -0.31 0.81 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -28.53 351.74 -9.39 -37.92 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.63 Total: 0.54 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -1.80 Total: -20.00 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.08 Total: -34.73 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.17 Total: -5.31 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.53 -9.39 -37.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237509727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.407 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds