Wall clock time and date at job start Tue Mar 31 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00414 * 2 1 4 4 C 1.38746 * 120.05764 * 89.99146 * 3 2 1 5 5 C 1.50708 * 120.02872 * 0.02562 * 4 3 2 6 6 C 1.38126 * 119.94556 * 180.02562 * 4 3 2 7 7 C 1.38288 * 120.05387 * 0.28104 * 6 4 3 8 8 C 1.38244 * 120.10735 * 359.44975 * 7 6 4 9 9 C 1.38166 * 120.05849 * 0.54781 * 8 7 6 10 10 C 1.50703 * 120.02629 * 179.70977 * 9 8 7 11 11 N 1.46904 * 109.46607 * 260.02019 * 10 9 8 12 12 C 1.46846 * 111.00214 * 45.79185 * 11 10 9 13 13 C 1.53031 * 109.52050 * 185.83929 * 12 11 10 14 14 C 1.53120 * 109.28012 * 300.81603 * 13 12 11 15 15 C 1.50698 * 109.57820 * 177.59181 * 14 13 12 16 16 H 1.07995 * 120.00500 * 240.29409 * 15 14 13 17 17 C 1.37884 * 119.99942 * 60.28699 * 15 14 13 18 18 N 1.31518 * 119.99462 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00391 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47174 * 60.00198 * 19 17 15 21 21 H 1.48502 * 109.47591 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47277 * 300.00525 * 19 17 15 23 23 C 1.53125 * 109.15870 * 57.66257 * 14 13 12 24 24 C 1.46848 * 110.99647 * 170.00298 * 11 10 9 25 25 H 1.09008 * 109.46765 * 60.00171 * 1 2 3 26 26 H 1.09003 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47078 * 300.00807 * 1 2 3 28 28 H 1.08998 * 109.46799 * 270.01752 * 5 4 3 29 29 H 1.08995 * 109.46985 * 30.02051 * 5 4 3 30 30 H 1.08999 * 109.47152 * 150.01873 * 5 4 3 31 31 H 1.08002 * 119.97098 * 179.97438 * 6 4 3 32 32 H 1.07993 * 119.94253 * 179.69801 * 7 6 4 33 33 H 1.08007 * 119.96986 * 180.25579 * 8 7 6 34 34 H 1.08998 * 109.47212 * 20.01554 * 10 9 8 35 35 H 1.09005 * 109.47199 * 140.02460 * 10 9 8 36 36 H 1.08998 * 109.46306 * 305.85544 * 12 11 10 37 37 H 1.08996 * 109.45836 * 65.82477 * 12 11 10 38 38 H 1.09005 * 109.50415 * 180.87958 * 13 12 11 39 39 H 1.08999 * 109.54299 * 60.78152 * 13 12 11 40 40 H 1.08998 * 109.52864 * 297.75316 * 14 13 12 41 41 H 0.97003 * 119.99332 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.50635 * 182.40729 * 23 14 13 43 43 H 1.08990 * 109.53715 * 62.30344 * 23 14 13 44 44 H 1.08996 * 109.46166 * 294.17482 * 24 11 10 45 45 H 1.09007 * 109.46596 * 54.15399 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 2.3614 1.8301 1.2009 5 6 2.0205 1.1603 2.5072 6 6 2.9881 3.0610 1.1982 7 6 3.2960 3.6788 -0.0001 8 6 2.9878 3.0613 -1.1980 9 6 2.3609 1.8300 -1.2006 10 6 2.0194 1.1605 -2.5068 11 7 0.5985 1.3764 -2.8108 12 6 0.2210 2.7788 -2.5934 13 6 -1.2900 2.9361 -2.7781 14 6 -1.6747 2.4981 -4.1940 15 6 -3.1689 2.5944 -4.3639 16 1 -3.7433 1.7115 -4.6027 17 6 -3.8030 3.8096 -4.2143 18 7 -3.1035 4.8848 -3.9238 19 14 -5.6552 3.9289 -4.4241 20 1 -6.3236 3.0509 -3.4302 21 1 -6.0878 5.3339 -4.2141 22 1 -6.0269 3.4967 -5.7954 23 6 -1.2273 1.0499 -4.4110 24 6 0.2819 0.9472 -4.1790 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.0224 1.4648 2.8220 29 1 2.0466 0.0783 2.3783 30 1 2.7461 1.4534 3.2660 31 1 3.2335 3.5436 2.1327 32 1 3.7816 4.6434 -0.0001 33 1 3.2330 3.5439 -2.1326 34 1 2.6300 1.5854 -3.3035 35 1 2.2159 0.0911 -2.4293 36 1 0.4962 3.0763 -1.5816 37 1 0.7425 3.4107 -3.3122 38 1 -1.5677 3.9800 -2.6320 39 1 -1.8128 2.3153 -2.0505 40 1 -1.1831 3.1441 -4.9213 41 1 -3.5495 5.7398 -3.8189 42 1 -1.4601 0.7461 -5.4316 43 1 -1.7485 0.3984 -3.7096 44 1 0.8031 1.5878 -4.8903 45 1 0.6012 -0.0857 -4.3187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237509727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:19 Heat of formation + Delta-G solvation = -33.416861 kcal Electronic energy + Delta-G solvation = -24113.907549 eV Core-core repulsion = 20902.447098 eV Total energy + Delta-G solvation = -3211.460451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36795 -39.54548 -38.06541 -36.02184 -34.16016 -32.85736 -31.48732 -31.28038 -28.59777 -27.94796 -27.07190 -25.95561 -23.79961 -23.35907 -22.48123 -21.46232 -20.31743 -18.48104 -18.43285 -17.34994 -16.96262 -16.51839 -16.43450 -16.00921 -15.63512 -15.22262 -14.83444 -14.71149 -14.60084 -14.35663 -14.24244 -14.15941 -13.57232 -13.49981 -13.22471 -12.93945 -12.85583 -12.79224 -12.58138 -12.46443 -12.37999 -12.11504 -12.01392 -11.90711 -11.81109 -11.33745 -10.80695 -10.73362 -10.63979 -10.36780 -9.61122 -9.42369 -9.11875 -8.07189 -6.20434 0.28772 0.36270 1.41665 1.42574 1.50155 2.44131 2.51192 3.04225 3.19675 3.27728 3.72427 3.87393 4.08551 4.22366 4.27832 4.30961 4.41118 4.46471 4.48954 4.53990 4.58594 4.62841 4.72663 4.75499 4.79240 4.81000 4.87795 4.89801 4.97508 4.99256 5.10157 5.14175 5.24016 5.30068 5.33879 5.51891 5.52984 5.57358 5.62749 5.64896 5.87821 6.00206 6.02668 6.26752 6.32249 6.41329 6.68835 6.91153 7.47292 8.97177 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019952 B = 0.004428 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.997849 B = 6322.520996 C = 6468.470703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.343 6.343 3 C 0.093 3.907 4 C -0.119 4.119 5 C -0.107 4.107 6 C -0.112 4.112 7 C -0.124 4.124 8 C -0.119 4.119 9 C -0.108 4.108 10 C 0.100 3.900 11 N -0.526 5.526 12 C 0.076 3.924 13 C -0.090 4.090 14 C 0.045 3.955 15 C -0.533 4.533 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.951 3.049 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.097 4.097 24 C 0.066 3.934 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.011 0.989 38 H 0.058 0.942 39 H 0.029 0.971 40 H -0.014 1.014 41 H 0.259 0.741 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.022 0.978 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.068 -5.881 10.250 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.260 6.260 3 C 0.049 3.951 4 C -0.120 4.120 5 C -0.163 4.163 6 C -0.130 4.130 7 C -0.142 4.142 8 C -0.137 4.137 9 C -0.109 4.109 10 C -0.027 4.027 11 N -0.251 5.251 12 C -0.052 4.052 13 C -0.129 4.129 14 C 0.027 3.973 15 C -0.571 4.571 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.777 3.223 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.135 4.135 24 C -0.062 4.062 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.005 0.995 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.839 -6.175 10.581 17.746 hybrid contribution -0.850 1.113 -0.982 1.710 sum 11.990 -5.062 9.598 16.171 Atomic orbital electron populations 1.23151 0.77808 1.03703 1.01386 1.85841 1.20792 1.24946 1.94424 1.18527 0.97891 0.86909 0.91815 1.20524 1.00361 0.95626 0.95464 1.20691 1.02252 1.00534 0.92824 1.21261 0.98448 0.94011 0.99321 1.21413 1.00170 1.00770 0.91819 1.21162 0.99159 0.94051 0.99371 1.20163 1.00472 0.95456 0.94766 1.20964 0.88227 1.00751 0.92757 1.62102 1.17138 1.20405 1.25434 1.21976 0.96569 0.87725 0.98910 1.21388 0.92324 1.01024 0.98157 1.18646 0.94146 0.91837 0.92681 1.21555 0.93971 0.94112 1.47426 0.93047 1.25724 1.02249 0.95599 0.94943 1.70019 1.36793 0.99559 1.49387 0.85722 0.80867 0.76942 0.78781 1.19677 1.21046 1.19729 1.21524 0.94192 0.97907 0.99855 1.22073 0.96334 1.00152 0.87633 0.92176 0.87992 0.94333 0.91193 0.91549 0.89563 0.83139 0.83487 0.85563 0.93878 0.89459 0.91916 0.97121 0.92398 0.95241 0.99550 0.93158 0.92789 0.92841 0.95972 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.13 113.37 1.26 2.20 16 2 O -0.34 -10.14 8.70 -92.42 -0.80 -10.94 16 3 C 0.09 2.69 5.67 22.50 0.13 2.82 16 4 C -0.12 -2.95 5.89 -19.77 -0.12 -3.07 16 5 C -0.11 -2.08 9.79 71.24 0.70 -1.38 16 6 C -0.11 -2.41 9.70 22.26 0.22 -2.20 16 7 C -0.12 -2.75 10.04 22.28 0.22 -2.53 16 8 C -0.12 -3.11 8.64 22.25 0.19 -2.92 16 9 C -0.11 -3.14 3.69 -19.77 -0.07 -3.22 16 10 C 0.10 2.97 5.07 85.56 0.43 3.40 16 11 N -0.53 -18.22 3.00 -900.91 -2.70 -20.92 16 12 C 0.08 3.03 4.80 86.32 0.41 3.44 16 13 C -0.09 -4.39 5.12 30.64 0.16 -4.23 16 14 C 0.05 2.31 2.16 -11.46 -0.02 2.28 16 15 C -0.53 -29.72 8.56 25.60 0.22 -29.50 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.74 5.31 84.66 0.45 1.19 16 18 N -0.92 -53.61 11.37 21.45 0.24 -53.36 16 19 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 C -0.10 -4.02 5.32 30.65 0.16 -3.86 16 24 C 0.07 2.28 5.42 86.33 0.47 2.75 16 25 H 0.06 2.00 6.25 -2.38 -0.01 1.98 16 26 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.37 7.53 -2.39 -0.02 1.35 16 30 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 31 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.13 3.09 8.04 -2.91 -0.02 3.06 16 34 H 0.04 1.21 7.94 -2.39 -0.02 1.19 16 35 H 0.09 2.51 7.85 -2.38 -0.02 2.49 16 36 H 0.06 2.44 6.03 -2.39 -0.01 2.43 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.06 3.19 6.18 -2.38 -0.01 3.17 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 40 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 41 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 2.57 8.12 -2.38 -0.02 2.55 16 Total: -1.00 -62.29 351.74 4.52 -57.77 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.94 Total: 16.25 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 4.81 Total: -34.82 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -2.46 Total: -74.29 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.80 Total: -10.94 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -62.29 4.52 -57.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237509727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.355 kcal (2) G-P(sol) polarization free energy of solvation -62.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds