Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46738 * 2 1 4 4 C 1.52996 * 109.47231 * 294.99508 * 3 2 1 5 5 C 1.52999 * 109.47153 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47048 * 60.00232 * 5 4 3 7 7 N 1.46502 * 109.46741 * 59.99630 * 6 5 4 8 8 C 1.39783 * 119.99653 * 85.00346 * 7 6 5 9 9 C 1.38951 * 120.01034 * 359.72083 * 8 7 6 10 10 C 1.38010 * 119.99749 * 179.72120 * 9 8 7 11 11 C 1.38898 * 120.00206 * 0.55417 * 10 9 8 12 12 O 1.35794 * 119.99316 * 179.70200 * 11 10 9 13 13 C 1.34812 * 117.00534 * 174.48119 * 12 11 10 14 14 H 1.08006 * 119.99443 * 5.05392 * 13 12 11 15 15 C 1.38613 * 120.00410 * 185.05727 * 13 12 11 16 16 N 1.31580 * 119.99968 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00020 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47365 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47241 * 119.99720 * 17 15 13 20 20 H 1.48500 * 109.47279 * 239.99882 * 17 15 13 21 21 C 1.38899 * 120.01323 * 359.72209 * 11 10 9 22 22 C 1.38003 * 120.00806 * 0.02562 * 21 11 10 23 23 C 1.52992 * 109.47110 * 300.00216 * 6 5 4 24 24 C 1.52999 * 109.46783 * 174.99537 * 3 2 1 25 25 H 1.08995 * 109.47468 * 300.00088 * 1 2 3 26 26 H 1.09001 * 109.46728 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47153 * 60.00510 * 1 2 3 28 28 H 1.08997 * 109.47153 * 119.99489 * 2 1 3 29 29 H 1.08995 * 109.47725 * 240.00398 * 2 1 3 30 30 H 1.08998 * 109.46944 * 55.00013 * 3 2 1 31 31 H 1.08998 * 109.47287 * 300.00593 * 4 3 2 32 32 H 1.09003 * 109.46499 * 59.99889 * 4 3 2 33 33 H 1.08998 * 109.47072 * 300.00536 * 5 4 3 34 34 H 1.08997 * 109.46777 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.46858 * 179.97438 * 6 5 4 36 36 H 0.96995 * 120.00443 * 265.00046 * 7 6 5 37 37 H 1.08000 * 119.99828 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.99622 * 180.25996 * 10 9 8 39 39 H 0.97008 * 119.99851 * 180.02562 * 16 15 13 40 40 H 1.08002 * 119.99229 * 179.97438 * 21 11 10 41 41 H 1.07997 * 120.00443 * 179.97438 * 22 21 11 42 42 H 1.09008 * 109.47259 * 299.99800 * 23 6 5 43 43 H 1.08996 * 109.47287 * 180.02562 * 23 6 5 44 44 H 1.08997 * 109.47636 * 299.99780 * 24 3 2 45 45 H 1.08998 * 109.46991 * 60.00505 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6352 2.1266 -1.3074 5 6 2.1446 3.5693 -1.3071 6 6 3.6694 3.5718 -1.1810 7 7 4.2541 2.8476 -2.3123 8 6 4.4869 3.5100 -3.5210 9 6 4.1585 4.8539 -3.6514 10 6 4.3938 5.5091 -4.8431 11 6 4.9482 4.8224 -5.9156 12 8 5.1741 5.4658 -7.0899 13 6 5.8179 4.7754 -8.0523 14 1 6.0564 3.7329 -7.9011 15 6 6.1739 5.4033 -9.2356 16 7 5.8830 6.6732 -9.4199 17 14 7.0666 4.4466 -10.5688 18 1 7.2738 3.0465 -10.1190 19 1 6.2528 4.4515 -11.8109 20 1 8.3824 5.0809 -10.8365 21 6 5.2713 3.4776 -5.7874 22 6 5.0410 2.8232 -4.5944 23 6 4.0741 2.8877 0.1263 24 6 3.5647 1.4445 0.1258 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 1.6052 1.9816 0.8418 31 1 2.0699 1.5875 -2.1491 32 1 0.5489 2.1252 -1.3969 33 1 1.7096 4.1080 -0.4653 34 1 1.8559 4.0567 -2.2383 35 1 4.0323 4.5996 -1.1812 36 1 4.4796 1.9085 -2.2227 37 1 3.7230 5.3866 -2.8190 38 1 4.1425 6.5547 -4.9431 39 1 6.1318 7.1125 -10.2483 40 1 5.7019 2.9439 -6.6217 41 1 5.2918 1.7775 -4.4949 42 1 3.6391 3.4265 0.9682 43 1 5.1603 2.8899 0.2164 44 1 3.8531 0.9572 1.0572 45 1 3.9994 0.9055 -0.7160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020126404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = -25.540994 kcal Electronic energy + Delta-G solvation = -22810.178136 eV Core-core repulsion = 19599.059208 eV Total energy + Delta-G solvation = -3211.118928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79495 -38.64450 -36.71735 -34.76878 -32.41353 -31.71795 -30.93048 -30.12814 -28.75786 -26.77926 -25.04089 -23.96668 -22.62167 -22.00476 -21.05270 -20.60002 -19.15498 -17.75607 -17.02284 -16.53404 -15.51624 -15.41188 -14.66547 -14.39095 -14.31737 -13.98087 -13.89932 -13.66827 -13.41187 -13.38205 -12.83140 -12.56681 -12.45459 -12.27180 -12.14565 -11.98774 -11.60640 -11.49429 -11.36988 -11.24300 -11.18929 -10.97625 -10.94836 -10.64591 -10.43638 -10.30451 -10.15359 -10.05335 -9.17967 -9.11108 -8.39559 -8.12042 -6.33283 -6.28918 -3.86337 2.25051 2.63060 3.19890 3.21147 3.26328 3.90316 4.08629 4.47734 4.54929 4.60816 4.73567 4.90480 5.05931 5.07259 5.19192 5.23521 5.25720 5.41825 5.42753 5.44174 5.48834 5.53741 5.62131 5.72268 5.75597 5.77126 5.81265 5.85543 5.95283 5.98976 6.03348 6.11340 6.19136 6.26614 6.29561 6.35343 6.38903 6.61473 6.91635 6.97535 7.19458 7.36681 7.50524 7.70170 8.06459 8.15479 8.32882 9.16849 9.92305 10.89600 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030740 B = 0.002939 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.637853 B = 9524.394647 C = 9777.124327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.109 4.109 5 C -0.137 4.137 6 C 0.160 3.840 7 N -0.750 5.750 8 C 0.129 3.871 9 C -0.147 4.147 10 C -0.150 4.150 11 C 0.112 3.888 12 O -0.190 6.190 13 C -0.385 4.385 14 H 0.088 0.912 15 C 0.035 3.965 16 N -0.870 5.870 17 Si 0.937 3.063 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.189 4.189 22 C -0.145 4.145 23 C -0.125 4.125 24 C -0.113 4.113 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.388 0.612 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.266 0.734 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 -10.851 19.552 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.105 4.105 4 C -0.147 4.147 5 C -0.176 4.176 6 C 0.054 3.946 7 N -0.386 5.386 8 C 0.031 3.969 9 C -0.170 4.170 10 C -0.170 4.170 11 C 0.059 3.941 12 O -0.095 6.095 13 C -0.462 4.462 14 H 0.105 0.895 15 C -0.168 4.168 16 N -0.507 5.507 17 Si 0.763 3.237 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.209 4.209 22 C -0.167 4.167 23 C -0.163 4.163 24 C -0.151 4.151 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.223 0.777 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.076 0.924 40 H 0.144 0.856 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.959 -10.306 19.385 23.031 hybrid contribution 0.535 -0.908 -0.673 1.250 sum -6.424 -11.213 18.712 22.741 Atomic orbital electron populations 1.21816 0.96034 1.01333 1.01928 1.21569 0.95849 0.96601 1.01722 1.21200 0.95256 0.95625 0.98422 1.21524 1.00108 0.95874 0.97175 1.22038 0.96559 0.96996 1.01983 1.20647 0.92142 0.96144 0.85716 1.44342 1.72546 1.11776 1.09955 1.17405 1.01096 0.92006 0.86411 1.20201 1.06380 0.92995 0.97377 1.20032 1.05745 0.99576 0.91648 1.19228 0.96200 0.90989 0.87634 1.83984 1.67673 1.39590 1.18287 1.21274 1.35616 0.94984 0.94306 0.89460 1.25206 0.97702 0.96000 0.97849 1.70062 1.44947 1.09754 1.25920 0.85707 0.78865 0.79076 0.80099 1.19283 1.20351 1.20337 1.20980 1.06854 0.94974 0.98094 1.20219 1.05078 0.98549 0.92879 1.21796 1.01063 0.96233 0.97243 1.21560 0.95373 0.96642 1.01488 0.92951 0.93085 0.92354 0.92348 0.92055 0.91499 0.91565 0.92338 0.92104 0.91378 0.90933 0.77710 0.87100 0.86654 0.92405 0.85631 0.87829 0.91147 0.91546 0.92201 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.77 16 2 C -0.12 -0.92 5.40 -26.73 -0.14 -1.06 16 3 C -0.09 -0.71 2.19 -90.62 -0.20 -0.90 16 4 C -0.11 -1.07 4.80 -26.73 -0.13 -1.20 16 5 C -0.14 -1.45 5.53 -26.73 -0.15 -1.60 16 6 C 0.16 1.76 2.48 -67.93 -0.17 1.60 16 7 N -0.75 -9.85 4.41 -52.12 -0.23 -10.08 16 8 C 0.13 2.21 6.64 -83.70 -0.56 1.66 16 9 C -0.15 -2.68 8.83 -39.40 -0.35 -3.03 16 10 C -0.15 -3.25 9.98 -39.42 -0.39 -3.64 16 11 C 0.11 2.77 6.65 -39.09 -0.26 2.51 16 12 O -0.19 -5.59 9.76 -0.04 0.00 -5.59 16 13 C -0.38 -11.08 9.48 30.87 0.29 -10.79 16 14 H 0.09 2.34 5.20 -52.48 -0.27 2.06 16 15 C 0.04 0.99 5.49 -17.52 -0.10 0.90 16 16 N -0.87 -26.31 13.67 55.48 0.76 -25.56 16 17 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.19 -4.21 9.16 -39.42 -0.36 -4.57 16 22 C -0.14 -2.71 9.89 -39.40 -0.39 -3.10 16 23 C -0.13 -1.10 5.61 -26.71 -0.15 -1.25 16 24 C -0.11 -0.92 5.03 -26.70 -0.13 -1.05 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.75 7.61 -51.93 -0.39 0.36 16 32 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.86 7.67 -51.93 -0.40 0.46 16 35 H 0.07 0.87 6.49 -51.93 -0.34 0.53 16 36 H 0.39 4.64 6.88 -40.82 -0.28 4.36 16 37 H 0.11 1.73 6.08 -52.49 -0.32 1.41 16 38 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.13 2.82 5.63 -52.49 -0.30 2.52 16 41 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.53 6.51 -51.93 -0.34 0.20 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -30.82 348.44 -9.17 -39.99 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.10 Total: 6.12 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.82 Total: -26.29 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.53 Total: -35.63 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.00 Total: -5.59 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.82 -9.17 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.453 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds