Wall clock time and date at job start Tue Mar 31 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46738 * 2 1 4 4 C 1.52996 * 109.47231 * 294.99508 * 3 2 1 5 5 C 1.52999 * 109.47153 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47048 * 60.00232 * 5 4 3 7 7 N 1.46502 * 109.46741 * 59.99630 * 6 5 4 8 8 C 1.39783 * 119.99653 * 85.00346 * 7 6 5 9 9 C 1.38951 * 120.01034 * 359.72083 * 8 7 6 10 10 C 1.38010 * 119.99749 * 179.72120 * 9 8 7 11 11 C 1.38898 * 120.00206 * 0.55417 * 10 9 8 12 12 O 1.35794 * 119.99316 * 179.70200 * 11 10 9 13 13 C 1.34812 * 117.00534 * 174.48119 * 12 11 10 14 14 H 1.08006 * 119.99443 * 5.05392 * 13 12 11 15 15 C 1.38613 * 120.00410 * 185.05727 * 13 12 11 16 16 N 1.31580 * 119.99968 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00020 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47365 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47241 * 119.99720 * 17 15 13 20 20 H 1.48500 * 109.47279 * 239.99882 * 17 15 13 21 21 C 1.38899 * 120.01323 * 359.72209 * 11 10 9 22 22 C 1.38003 * 120.00806 * 0.02562 * 21 11 10 23 23 C 1.52992 * 109.47110 * 300.00216 * 6 5 4 24 24 C 1.52999 * 109.46783 * 174.99537 * 3 2 1 25 25 H 1.08995 * 109.47468 * 300.00088 * 1 2 3 26 26 H 1.09001 * 109.46728 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47153 * 60.00510 * 1 2 3 28 28 H 1.08997 * 109.47153 * 119.99489 * 2 1 3 29 29 H 1.08995 * 109.47725 * 240.00398 * 2 1 3 30 30 H 1.08998 * 109.46944 * 55.00013 * 3 2 1 31 31 H 1.08998 * 109.47287 * 300.00593 * 4 3 2 32 32 H 1.09003 * 109.46499 * 59.99889 * 4 3 2 33 33 H 1.08998 * 109.47072 * 300.00536 * 5 4 3 34 34 H 1.08997 * 109.46777 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.46858 * 179.97438 * 6 5 4 36 36 H 0.96995 * 120.00443 * 265.00046 * 7 6 5 37 37 H 1.08000 * 119.99828 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.99622 * 180.25996 * 10 9 8 39 39 H 0.97008 * 119.99851 * 180.02562 * 16 15 13 40 40 H 1.08002 * 119.99229 * 179.97438 * 21 11 10 41 41 H 1.07997 * 120.00443 * 179.97438 * 22 21 11 42 42 H 1.09008 * 109.47259 * 299.99800 * 23 6 5 43 43 H 1.08996 * 109.47287 * 180.02562 * 23 6 5 44 44 H 1.08997 * 109.47636 * 299.99780 * 24 3 2 45 45 H 1.08998 * 109.46991 * 60.00505 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6352 2.1266 -1.3074 5 6 2.1446 3.5693 -1.3071 6 6 3.6694 3.5718 -1.1810 7 7 4.2541 2.8476 -2.3123 8 6 4.4869 3.5100 -3.5210 9 6 4.1585 4.8539 -3.6514 10 6 4.3938 5.5091 -4.8431 11 6 4.9482 4.8224 -5.9156 12 8 5.1741 5.4658 -7.0899 13 6 5.8179 4.7754 -8.0523 14 1 6.0564 3.7329 -7.9011 15 6 6.1739 5.4033 -9.2356 16 7 5.8830 6.6732 -9.4199 17 14 7.0666 4.4466 -10.5688 18 1 7.2738 3.0465 -10.1190 19 1 6.2528 4.4515 -11.8109 20 1 8.3824 5.0809 -10.8365 21 6 5.2713 3.4776 -5.7874 22 6 5.0410 2.8232 -4.5944 23 6 4.0741 2.8877 0.1263 24 6 3.5647 1.4445 0.1258 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 1.6052 1.9816 0.8418 31 1 2.0699 1.5875 -2.1491 32 1 0.5489 2.1252 -1.3969 33 1 1.7096 4.1080 -0.4653 34 1 1.8559 4.0567 -2.2383 35 1 4.0323 4.5996 -1.1812 36 1 4.4796 1.9085 -2.2227 37 1 3.7230 5.3866 -2.8190 38 1 4.1425 6.5547 -4.9431 39 1 6.1318 7.1125 -10.2483 40 1 5.7019 2.9439 -6.6217 41 1 5.2918 1.7775 -4.4949 42 1 3.6391 3.4265 0.9682 43 1 5.1603 2.8899 0.2164 44 1 3.8531 0.9572 1.0572 45 1 3.9994 0.9055 -0.7160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020126404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:07 Heat of formation + Delta-G solvation = -42.307515 kcal Electronic energy + Delta-G solvation = -22810.905187 eV Core-core repulsion = 19599.059208 eV Total energy + Delta-G solvation = -3211.845979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96898 -40.11232 -38.27395 -35.84500 -34.20822 -33.06862 -31.91177 -31.52234 -29.71629 -28.29795 -26.95525 -24.81327 -23.50343 -23.38944 -22.56988 -21.38859 -20.26185 -19.49605 -18.75402 -17.94785 -16.68548 -16.42998 -16.15218 -15.76719 -15.40979 -15.29062 -15.16219 -14.98308 -14.56497 -14.34972 -14.32569 -14.03533 -13.50840 -13.44531 -13.30913 -13.28775 -12.93233 -12.74304 -12.58251 -12.36910 -12.32065 -12.08753 -11.98824 -11.96021 -11.69256 -11.28726 -11.07138 -11.05703 -10.81374 -10.75726 -10.10289 -9.75362 -8.38935 -7.87843 -6.02186 0.60501 0.96383 1.36484 1.45607 1.54737 2.22803 2.72428 2.92651 3.27193 3.68832 3.78303 3.84986 3.89708 4.13800 4.18025 4.21875 4.31277 4.41563 4.50154 4.55209 4.58573 4.65555 4.68349 4.75144 4.78482 4.83492 4.95106 4.97713 5.08368 5.14249 5.17336 5.18954 5.23927 5.30126 5.32022 5.34368 5.39792 5.44334 5.54687 5.57951 5.58769 5.67247 5.80691 6.02809 6.12699 6.69557 7.06414 7.10803 7.94933 8.86036 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030740 B = 0.002939 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.637853 B = 9524.394647 C = 9777.124327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.107 4.107 5 C -0.134 4.134 6 C 0.153 3.847 7 N -0.735 5.735 8 C 0.160 3.840 9 C -0.146 4.146 10 C -0.155 4.155 11 C 0.060 3.940 12 O -0.244 6.244 13 C -0.404 4.404 14 H 0.097 0.903 15 C -0.030 4.030 16 N -0.928 5.928 17 Si 1.017 2.983 18 H -0.252 1.252 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.192 4.192 22 C -0.150 4.150 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.399 0.601 37 H 0.141 0.859 38 H 0.111 0.889 39 H 0.269 0.731 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 -13.274 22.404 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.099 4.099 4 C -0.145 4.145 5 C -0.173 4.173 6 C 0.048 3.952 7 N -0.370 5.370 8 C 0.058 3.942 9 C -0.168 4.168 10 C -0.175 4.175 11 C 0.011 3.989 12 O -0.152 6.152 13 C -0.481 4.481 14 H 0.115 0.885 15 C -0.226 4.226 16 N -0.568 5.568 17 Si 0.837 3.163 18 H -0.176 1.176 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.212 4.212 22 C -0.172 4.172 23 C -0.156 4.156 24 C -0.149 4.149 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.235 0.765 37 H 0.159 0.841 38 H 0.129 0.871 39 H 0.078 0.922 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.054 -12.780 22.332 26.680 hybrid contribution 0.411 -0.255 -1.171 1.267 sum -6.643 -13.035 21.161 25.726 Atomic orbital electron populations 1.21817 0.95929 1.01613 1.01797 1.21555 0.95941 0.96250 1.01859 1.21150 0.95426 0.95801 0.97510 1.21494 1.00094 0.95255 0.97627 1.22004 0.96099 0.97587 1.01648 1.20887 0.92361 0.96029 0.85951 1.44474 1.71160 1.12335 1.08991 1.17519 0.97752 0.91578 0.87321 1.20439 1.05935 0.93606 0.96816 1.20237 1.05382 0.99693 0.92206 1.19712 0.99170 0.92533 0.87526 1.83931 1.69945 1.41270 1.20076 1.21782 1.35736 0.95655 0.94900 0.88534 1.26525 0.98528 0.97161 1.00339 1.70216 1.47472 1.12010 1.27095 0.84551 0.77409 0.78054 0.76310 1.17555 1.19490 1.19483 1.21030 1.06735 0.94127 0.99304 1.20472 1.04862 1.00010 0.91852 1.21757 1.01268 0.96563 0.96049 1.21563 0.95084 0.96177 1.02085 0.92373 0.92686 0.93171 0.91351 0.92774 0.90679 0.93255 0.92269 0.90216 0.93631 0.91353 0.76454 0.84148 0.87109 0.92177 0.86553 0.84645 0.89415 0.91452 0.90704 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 71.98 0.70 -1.19 16 2 C -0.12 -1.46 5.40 30.60 0.17 -1.30 16 3 C -0.08 -1.03 2.19 -10.79 -0.02 -1.06 16 4 C -0.11 -1.82 4.80 30.59 0.15 -1.67 16 5 C -0.13 -2.46 5.53 30.59 0.17 -2.29 16 6 C 0.15 2.86 2.48 44.99 0.11 2.97 16 7 N -0.74 -16.96 4.41 -318.80 -1.41 -18.37 16 8 C 0.16 5.13 6.64 38.22 0.25 5.39 16 9 C -0.15 -5.12 8.83 22.39 0.20 -4.92 16 10 C -0.16 -6.92 9.98 22.37 0.22 -6.69 16 11 C 0.06 3.12 6.65 22.59 0.15 3.27 16 12 O -0.24 -15.31 9.76 -23.05 -0.22 -15.53 16 13 C -0.40 -24.46 9.48 67.91 0.64 -23.81 16 14 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 15 C -0.03 -1.75 5.49 84.82 0.47 -1.28 16 16 N -0.93 -59.04 13.67 21.61 0.30 -58.75 16 17 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 18 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 C -0.19 -8.71 9.16 22.37 0.20 -8.51 16 22 C -0.15 -5.35 9.89 22.39 0.22 -5.13 16 23 C -0.12 -1.60 5.61 30.61 0.17 -1.42 16 24 C -0.11 -1.37 5.03 30.61 0.15 -1.21 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.69 6.56 -2.39 -0.02 0.67 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 1.00 7.61 -2.39 -0.02 0.99 16 32 H 0.06 1.01 6.56 -2.39 -0.02 0.99 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.04 1.05 7.67 -2.39 -0.02 1.03 16 35 H 0.07 1.39 6.49 -2.39 -0.02 1.38 16 36 H 0.40 8.06 6.88 -92.71 -0.64 7.42 16 37 H 0.14 4.07 6.08 -2.91 -0.02 4.06 16 38 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 40 H 0.12 5.38 5.63 -2.91 -0.02 5.36 16 41 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 42 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 0.76 6.51 -2.39 -0.02 0.75 16 Total: -1.00 -71.64 348.44 4.99 -66.65 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.34 Total: 28.31 kcal Atomic # 6 Polarization: -52.84 SS G_CDS: 3.95 Total: -48.88 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -1.11 Total: -77.12 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.22 Total: -15.53 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -71.64 4.99 -66.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.345 kcal (2) G-P(sol) polarization free energy of solvation -71.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds