Wall clock time and date at job start Tue Mar 31 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47236 * 2 1 4 4 C 1.53002 * 109.47176 * 174.99928 * 3 2 1 5 5 C 1.53001 * 109.46798 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47098 * 299.99619 * 5 4 3 7 7 N 1.46497 * 109.46996 * 180.02562 * 6 5 4 8 8 C 1.39668 * 119.99969 * 155.00355 * 7 6 5 9 9 C 1.39011 * 120.04085 * 359.97438 * 8 7 6 10 10 C 1.38149 * 120.06218 * 180.02562 * 9 8 7 11 11 C 1.38176 * 120.14500 * 359.72293 * 10 9 8 12 12 C 1.38918 * 120.07431 * 0.55384 * 11 10 9 13 13 O 1.35753 * 120.02696 * 179.72007 * 12 11 10 14 14 C 1.34835 * 116.99726 * 174.18640 * 13 12 11 15 15 H 1.08000 * 119.99927 * 5.06436 * 14 13 12 16 16 C 1.38651 * 119.99920 * 185.05751 * 14 13 12 17 17 N 1.31558 * 119.99943 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99837 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47008 * 120.00226 * 18 16 14 21 21 H 1.48505 * 109.46853 * 240.00014 * 18 16 14 22 22 C 1.38757 * 119.94038 * 359.44745 * 12 11 10 23 23 C 1.53002 * 109.46668 * 60.00706 * 6 5 4 24 24 C 1.52997 * 109.47284 * 295.00403 * 3 2 1 25 25 H 1.08999 * 109.47580 * 59.99596 * 1 2 3 26 26 H 1.09002 * 109.47257 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46988 * 299.99855 * 1 2 3 28 28 H 1.09002 * 109.47228 * 240.00611 * 2 1 3 29 29 H 1.08993 * 109.47157 * 120.00274 * 2 1 3 30 30 H 1.09005 * 109.46948 * 55.00210 * 3 2 1 31 31 H 1.09001 * 109.46510 * 60.00444 * 4 3 2 32 32 H 1.08995 * 109.46967 * 300.00119 * 4 3 2 33 33 H 1.09003 * 109.46291 * 180.02562 * 5 4 3 34 34 H 1.08989 * 109.47183 * 60.00426 * 5 4 3 35 35 H 1.08992 * 109.47501 * 300.00905 * 6 5 4 36 36 H 0.97005 * 120.00018 * 335.00837 * 7 6 5 37 37 H 1.07992 * 119.96556 * 0.02562 * 9 8 7 38 38 H 1.08004 * 119.92685 * 180.02562 * 10 9 8 39 39 H 1.07999 * 119.96177 * 180.29756 * 11 10 9 40 40 H 0.97001 * 120.00127 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.07612 * 180.29913 * 22 12 11 42 42 H 1.09005 * 109.47283 * 59.99789 * 23 6 5 43 43 H 1.09000 * 109.47088 * 179.97438 * 23 6 5 44 44 H 1.08997 * 109.47583 * 299.99666 * 24 3 2 45 45 H 1.09006 * 109.47118 * 59.99850 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1257 5 6 4.0747 2.8869 0.1264 6 6 3.6700 3.5714 -1.1807 7 7 4.1588 4.9524 -1.1803 8 6 4.3915 5.6112 -2.3897 9 6 4.1602 4.9570 -3.5943 10 6 4.3908 5.6079 -4.7908 11 6 4.8463 6.9124 -4.7944 12 6 5.0849 7.5699 -3.5942 13 8 5.5379 8.8496 -3.5989 14 6 5.6340 9.4693 -2.4053 15 1 5.4349 8.9226 -1.4954 16 6 5.9885 10.8084 -2.3460 17 7 6.2307 11.4745 -3.4544 18 14 6.1224 11.6668 -0.6923 19 1 5.8018 10.7045 0.3924 20 1 7.5051 12.1766 -0.5097 21 1 5.1660 12.8019 -0.6449 22 6 4.8545 6.9192 -2.3904 23 6 2.1452 3.5696 -1.3064 24 6 1.6352 2.1266 -1.3073 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6054 1.9815 0.8419 31 1 3.9994 0.9053 -0.7162 32 1 3.8532 0.9570 1.0571 33 1 5.1611 2.8880 0.2155 34 1 3.6402 3.4254 0.9684 35 1 4.1045 3.0327 -2.0227 36 1 4.3208 5.4094 -0.3401 37 1 3.7999 3.9389 -3.5947 38 1 4.2099 5.0977 -5.7253 39 1 5.0210 7.4201 -5.7315 40 1 6.4791 12.4112 -3.4129 41 1 5.0346 7.4299 -1.4560 42 1 1.7105 4.1083 -0.4643 43 1 1.8567 4.0577 -2.2373 44 1 2.0698 1.5877 -2.1492 45 1 0.5488 2.1253 -1.3968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037069500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:11 Heat of formation + Delta-G solvation = -32.161039 kcal Electronic energy + Delta-G solvation = -22696.807665 eV Core-core repulsion = 19485.401671 eV Total energy + Delta-G solvation = -3211.405995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.62068 -38.68267 -36.81645 -34.97676 -32.69321 -32.08701 -30.92574 -29.51332 -28.49773 -27.06210 -25.20613 -23.78030 -22.69623 -21.74211 -21.10794 -20.22642 -19.88903 -17.82849 -17.26004 -16.05250 -15.32599 -15.16783 -14.92496 -14.67361 -14.23118 -14.20480 -13.87027 -13.69103 -13.48294 -13.36664 -13.07291 -12.76683 -12.43030 -12.23506 -12.16378 -11.78570 -11.67700 -11.58829 -11.34254 -11.23247 -10.99453 -10.91014 -10.78920 -10.66632 -10.43720 -10.35602 -10.28191 -10.15762 -9.32894 -9.30130 -8.72097 -7.30322 -6.70293 -6.37548 -3.96558 2.43522 2.62497 3.16020 3.17081 3.22247 3.78668 4.02497 4.45892 4.50113 4.64443 4.75031 4.85150 5.01415 5.12206 5.16833 5.19875 5.25267 5.31633 5.38666 5.41334 5.46899 5.49803 5.61176 5.70566 5.72714 5.78707 5.83694 5.89725 5.97570 6.00524 6.04386 6.09921 6.14049 6.27879 6.33071 6.35971 6.45607 6.71576 6.72678 7.10503 7.20447 7.44565 7.54464 7.73366 8.09130 8.09813 8.28317 9.08869 9.82262 10.81062 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023957 B = 0.003171 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.471304 B = 8826.850213 C = 9563.146738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.159 3.841 7 N -0.751 5.751 8 C 0.251 3.749 9 C -0.280 4.280 10 C -0.041 4.041 11 C -0.238 4.238 12 C 0.190 3.810 13 O -0.180 6.180 14 C -0.387 4.387 15 H 0.091 0.909 16 C 0.037 3.963 17 N -0.865 5.865 18 Si 0.939 3.061 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.303 4.303 23 C -0.135 4.135 24 C -0.112 4.112 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.393 0.607 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.268 0.732 41 H 0.123 0.877 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.225 -20.384 7.589 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.108 4.108 4 C -0.147 4.147 5 C -0.164 4.164 6 C 0.053 3.947 7 N -0.381 5.381 8 C 0.150 3.850 9 C -0.302 4.302 10 C -0.060 4.060 11 C -0.259 4.259 12 C 0.135 3.865 13 O -0.083 6.083 14 C -0.464 4.464 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.501 5.501 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.327 4.327 23 C -0.174 4.174 24 C -0.150 4.150 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.226 0.774 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.141 0.859 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.133 -20.160 7.292 22.929 hybrid contribution 0.097 0.655 1.233 1.400 sum -8.037 -19.505 8.525 22.754 Atomic orbital electron populations 1.21827 0.96009 1.01346 1.02003 1.21567 0.95847 0.96483 1.01812 1.21233 0.95417 0.95688 0.98445 1.21525 0.95201 0.96070 1.01925 1.21789 1.01152 0.95959 0.97549 1.20762 0.93133 0.83049 0.97774 1.44639 1.74713 1.13190 1.05537 1.17473 0.91500 0.90529 0.85502 1.20103 1.18407 1.00474 0.91256 1.20378 0.95764 0.93315 0.96504 1.20033 1.13784 0.96028 0.96013 1.19070 0.89210 0.85528 0.92682 1.83988 1.71440 1.20023 1.32851 1.21341 1.48339 0.93424 0.83268 0.89180 1.25267 0.96794 0.95488 0.99084 1.70053 1.43589 1.09755 1.26691 0.85673 0.78213 0.79323 0.80332 1.19248 1.20236 1.20235 1.20510 1.18260 0.95133 0.98778 1.22066 0.96338 0.96310 1.02707 1.21612 1.00651 0.95586 0.97153 0.92374 0.93050 0.92871 0.92022 0.92218 0.91269 0.91769 0.91871 0.91443 0.91733 0.90601 0.77359 0.87779 0.87308 0.86997 0.92217 0.85897 0.92076 0.91249 0.91977 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 37.16 0.36 -0.67 16 2 C -0.12 -0.83 5.40 -26.73 -0.14 -0.98 16 3 C -0.09 -0.71 2.19 -90.62 -0.20 -0.91 16 4 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 5 C -0.13 -1.24 5.39 -26.73 -0.14 -1.38 16 6 C 0.16 1.91 2.15 -67.93 -0.15 1.76 16 7 N -0.75 -11.32 5.25 -52.19 -0.27 -11.60 16 8 C 0.25 4.78 6.63 -83.81 -0.56 4.22 16 9 C -0.28 -5.07 8.85 -39.33 -0.35 -5.41 16 10 C -0.04 -0.77 10.03 -39.64 -0.40 -1.16 16 11 C -0.24 -5.30 9.99 -39.35 -0.39 -5.69 16 12 C 0.19 4.77 6.64 -39.14 -0.26 4.51 16 13 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 14 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16 15 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 16 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 17 N -0.87 -25.91 13.67 55.48 0.76 -25.15 16 18 Si 0.94 20.96 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.30 -6.83 9.01 -39.20 -0.35 -7.18 16 23 C -0.14 -1.53 5.44 -26.71 -0.15 -1.67 16 24 C -0.11 -1.01 4.96 -26.71 -0.13 -1.14 16 25 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.62 8.14 -51.94 -0.42 0.19 16 35 H 0.08 0.97 6.48 -51.93 -0.34 0.64 16 36 H 0.39 5.59 8.61 -40.82 -0.35 5.23 16 37 H 0.10 1.64 6.11 -52.49 -0.32 1.32 16 38 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.12 2.80 5.64 -52.49 -0.30 2.50 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -30.84 352.95 -9.31 -40.15 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.29 Total: 7.23 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -2.80 Total: -26.59 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.48 Total: -36.75 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.84 -9.31 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.992 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds