Wall clock time and date at job start Tue Mar 31 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.53001 * 109.47421 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47421 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47421 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46844 * 305.00665 * 6 5 4 8 8 C 1.52994 * 109.47089 * 185.00051 * 6 5 4 9 9 N 1.46504 * 109.46852 * 65.00132 * 6 5 4 10 10 C 1.34777 * 120.00205 * 205.00281 * 9 6 5 11 11 O 1.21551 * 119.99455 * 359.97438 * 10 9 6 12 12 C 1.47880 * 119.99970 * 179.72468 * 10 9 6 13 13 C 1.39915 * 120.02860 * 359.97438 * 12 10 9 14 14 C 1.38332 * 120.36076 * 179.76117 * 13 12 10 15 15 C 1.37750 * 120.40620 * 0.51670 * 14 13 12 16 16 C 1.40751 * 120.04589 * 359.74401 * 15 14 13 17 17 C 1.41435 * 120.17861 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99717 * 150.17697 * 17 16 15 19 19 C 1.39936 * 119.99744 * 330.17449 * 17 16 15 20 20 N 1.30832 * 119.99772 * 161.73171 * 19 17 16 21 21 Si 1.86799 * 120.00309 * 341.72863 * 19 17 16 22 22 H 1.48501 * 109.46942 * 95.41483 * 21 19 17 23 23 H 1.48496 * 109.47254 * 215.41323 * 21 19 17 24 24 H 1.48493 * 109.47022 * 335.41397 * 21 19 17 25 25 C 1.38998 * 120.02234 * 180.27336 * 12 10 9 26 26 H 1.09004 * 109.46974 * 299.99909 * 1 2 3 27 27 H 1.09006 * 109.47044 * 59.99766 * 1 2 3 28 28 H 1.09003 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47457 * 239.99979 * 2 1 3 30 30 H 1.09006 * 109.47044 * 120.00234 * 2 1 3 31 31 H 1.09004 * 109.46998 * 60.00105 * 3 2 1 32 32 H 1.08999 * 109.47574 * 299.99979 * 3 2 1 33 33 H 1.09004 * 109.46740 * 60.00202 * 4 3 2 34 34 H 1.09006 * 109.47226 * 300.00377 * 4 3 2 35 35 H 1.09004 * 109.46998 * 60.00360 * 5 4 3 36 36 H 1.08999 * 109.47574 * 300.00234 * 5 4 3 37 37 H 1.08996 * 109.47416 * 300.00046 * 8 6 5 38 38 H 1.08996 * 109.47107 * 60.00914 * 8 6 5 39 39 H 1.09006 * 109.46656 * 179.97438 * 8 6 5 40 40 H 0.97004 * 119.99611 * 25.00118 * 9 6 5 41 41 H 1.08001 * 119.81942 * 0.02562 * 13 12 10 42 42 H 1.07999 * 119.79352 * 180.25491 * 14 13 12 43 43 H 1.08001 * 119.97685 * 179.75712 * 15 14 13 44 44 H 0.96996 * 119.99776 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.20644 * 359.95551 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0026 7 1 5.9727 2.2952 0.8446 8 6 6.1199 4.3219 0.1290 9 7 6.0994 2.3014 -1.2490 10 6 7.3214 1.7348 -1.2959 11 8 8.0176 1.7083 -0.2999 12 6 7.8128 1.1403 -2.5576 13 6 7.0095 1.1654 -3.7029 14 6 7.4643 0.6157 -4.8881 15 6 8.7086 0.0282 -4.9519 16 6 9.5287 -0.0113 -3.8087 17 6 10.8070 -0.6134 -3.8712 18 1 11.6022 -0.2599 -3.2316 19 6 11.0412 -1.6672 -4.7616 20 7 12.2671 -1.9880 -5.0874 21 14 9.6038 -2.6157 -5.4852 22 1 9.2566 -2.0507 -6.8139 23 1 9.9799 -4.0441 -5.6377 24 1 8.4324 -2.5063 -4.5792 25 6 9.0707 0.5508 -2.6051 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8909 35 1 3.7164 3.3985 0.8913 36 1 3.7171 3.3991 -0.8886 37 1 5.7573 4.9114 -0.7130 38 1 5.7559 4.7559 1.0601 39 1 7.2100 4.3217 0.1303 40 1 5.5439 2.3228 -2.0439 41 1 6.0307 1.6200 -3.6626 42 1 6.8383 0.6438 -5.7677 43 1 9.0552 -0.4023 -5.8798 44 1 12.4294 -2.7187 -5.7043 45 1 9.6926 0.5255 -1.7224 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042201036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:42 Heat of formation + Delta-G solvation = -58.693770 kcal Electronic energy + Delta-G solvation = -22426.125327 eV Core-core repulsion = 19213.568787 eV Total energy + Delta-G solvation = -3212.556540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.62374 -37.62458 -36.74927 -35.11522 -33.71221 -32.15839 -30.84330 -30.15434 -29.53386 -26.57699 -25.24065 -23.54571 -22.40046 -21.14482 -20.90888 -20.51408 -19.99135 -17.88457 -16.35958 -16.33592 -15.64978 -15.47491 -14.70802 -14.58815 -14.21393 -14.05595 -13.89260 -13.63288 -13.55510 -13.05535 -12.79463 -12.74865 -12.51858 -12.20890 -12.11241 -11.95088 -11.79476 -11.64042 -11.26606 -11.10347 -11.03760 -10.93492 -10.78147 -10.67080 -10.54823 -10.49852 -10.00541 -9.71864 -9.40767 -9.11951 -8.79313 -7.86509 -7.75674 -7.00751 -4.55426 1.93133 2.51614 3.05087 3.17163 3.25659 3.55560 3.64592 3.92993 4.41314 4.49140 4.70376 4.78518 4.95354 5.01638 5.06432 5.29705 5.31765 5.39586 5.45654 5.48352 5.49946 5.59992 5.69268 5.71713 5.78540 5.80361 5.85478 5.88343 6.01729 6.03168 6.06879 6.17566 6.22410 6.27769 6.39849 6.66516 6.68077 6.80976 6.98670 7.21624 7.41221 7.50096 7.75409 7.82858 8.04019 8.28197 8.53349 8.70245 8.76410 10.01516 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.003610 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.055491 B = 7755.349473 C = 8847.532357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.141 3.859 7 H 0.085 0.915 8 C -0.163 4.163 9 N -0.728 5.728 10 C 0.564 3.436 11 O -0.549 6.549 12 C -0.108 4.108 13 C -0.216 4.216 14 C -0.083 4.083 15 C -0.222 4.222 16 C 0.082 3.918 17 C -0.443 4.443 18 H 0.094 0.906 19 C 0.083 3.917 20 N -0.804 5.804 21 Si 0.911 3.089 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.244 1.244 25 C -0.136 4.136 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.398 0.602 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.286 0.714 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.061 6.095 5.919 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.160 4.160 5 C -0.163 4.163 6 C 0.036 3.964 7 H 0.104 0.896 8 C -0.222 4.222 9 N -0.381 5.381 10 C 0.354 3.646 11 O -0.427 6.427 12 C -0.111 4.111 13 C -0.236 4.236 14 C -0.102 4.102 15 C -0.242 4.242 16 C 0.079 3.921 17 C -0.471 4.471 18 H 0.111 0.889 19 C -0.136 4.136 20 N -0.428 5.428 21 Si 0.737 3.263 22 H -0.196 1.196 23 H -0.217 1.217 24 H -0.167 1.167 25 C -0.156 4.156 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.234 0.766 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.097 0.903 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.323 5.931 6.548 20.342 hybrid contribution -0.723 -0.445 -0.901 1.238 sum -19.045 5.486 5.647 20.609 Atomic orbital electron populations 1.21777 0.96094 1.01492 1.01602 1.21549 0.95618 0.97102 1.02243 1.21615 0.95500 0.96674 1.01782 1.21634 0.95005 0.96539 1.02861 1.21894 0.94169 0.97478 1.02732 1.20904 0.93029 0.94303 0.88160 0.89646 1.22181 1.02406 0.96119 1.01447 1.46034 1.18281 1.60693 1.13084 1.18772 0.80482 0.76611 0.88748 1.90690 1.56477 1.58879 1.36680 1.19454 0.96747 1.02864 0.92072 1.20378 0.99295 1.10425 0.93497 1.20508 0.95575 0.97810 0.96277 1.21173 0.96932 1.08096 0.97984 1.17701 0.92659 0.91451 0.90301 1.19520 0.95660 1.13936 1.17974 0.88854 1.26169 0.96981 0.97067 0.93383 1.69694 1.21950 1.24990 1.26148 0.86309 0.82430 0.77322 0.80215 1.19559 1.21656 1.16704 1.21277 0.94461 1.02465 0.97427 0.92923 0.92838 0.92892 0.91888 0.92078 0.92229 0.92115 0.91451 0.91881 0.90697 0.91515 0.92640 0.92077 0.91893 0.76592 0.88661 0.88339 0.87921 0.90324 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.15 0.37 -0.73 16 2 C -0.13 -1.05 5.93 -26.74 -0.16 -1.21 16 3 C -0.12 -0.95 5.21 -26.73 -0.14 -1.09 16 4 C -0.12 -1.17 5.10 -26.73 -0.14 -1.30 16 5 C -0.12 -1.12 4.75 -26.73 -0.13 -1.25 16 6 C 0.14 1.72 2.57 -67.93 -0.17 1.55 16 7 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 8 C -0.16 -1.88 9.48 37.15 0.35 -1.53 16 9 N -0.73 -10.57 4.48 -54.74 -0.25 -10.82 16 10 C 0.56 10.99 7.74 -12.31 -0.10 10.89 16 11 O -0.55 -12.33 16.00 5.32 0.09 -12.24 16 12 C -0.11 -2.31 5.87 -105.04 -0.62 -2.93 16 13 C -0.22 -4.15 9.55 -38.92 -0.37 -4.52 16 14 C -0.08 -1.70 10.01 -39.73 -0.40 -2.10 16 15 C -0.22 -5.19 7.17 -38.81 -0.28 -5.47 16 16 C 0.08 2.07 5.10 -106.87 -0.55 1.52 16 17 C -0.44 -11.95 9.57 -37.73 -0.36 -12.32 16 18 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 19 C 0.08 2.16 5.40 -17.34 -0.09 2.07 16 20 N -0.80 -21.26 13.93 55.55 0.77 -20.48 16 21 Si 0.91 20.40 24.52 -169.99 -4.17 16.23 16 22 H -0.27 -5.79 6.71 56.52 0.38 -5.41 16 23 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 25 C -0.14 -3.29 9.34 -38.44 -0.36 -3.65 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.73 7.75 -51.93 -0.40 0.33 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 5.01 6.62 -40.82 -0.27 4.74 16 41 H 0.10 1.47 6.38 -52.49 -0.33 1.14 16 42 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.10 2.38 4.72 -52.49 -0.25 2.13 16 44 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 45 H 0.11 2.84 7.64 -52.49 -0.40 2.44 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -28.62 363.26 -8.78 -37.39 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.56 Total: 6.50 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -3.13 Total: -22.06 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.53 Total: -31.30 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.17 Total: 16.23 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.62 -8.78 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042201036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.303 kcal (2) G-P(sol) polarization free energy of solvation -28.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds