Wall clock time and date at job start Tue Mar 31 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.53001 * 109.47421 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47421 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47421 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46844 * 305.00665 * 6 5 4 8 8 C 1.52994 * 109.47089 * 185.00051 * 6 5 4 9 9 N 1.46504 * 109.46852 * 65.00132 * 6 5 4 10 10 C 1.34777 * 120.00205 * 205.00281 * 9 6 5 11 11 O 1.21551 * 119.99455 * 359.97438 * 10 9 6 12 12 C 1.47880 * 119.99970 * 179.72468 * 10 9 6 13 13 C 1.39915 * 120.02860 * 359.97438 * 12 10 9 14 14 C 1.38332 * 120.36076 * 179.76117 * 13 12 10 15 15 C 1.37750 * 120.40620 * 0.51670 * 14 13 12 16 16 C 1.40751 * 120.04589 * 359.74401 * 15 14 13 17 17 C 1.41435 * 120.17861 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99717 * 150.17697 * 17 16 15 19 19 C 1.39936 * 119.99744 * 330.17449 * 17 16 15 20 20 N 1.30832 * 119.99772 * 161.73171 * 19 17 16 21 21 Si 1.86799 * 120.00309 * 341.72863 * 19 17 16 22 22 H 1.48501 * 109.46942 * 95.41483 * 21 19 17 23 23 H 1.48496 * 109.47254 * 215.41323 * 21 19 17 24 24 H 1.48493 * 109.47022 * 335.41397 * 21 19 17 25 25 C 1.38998 * 120.02234 * 180.27336 * 12 10 9 26 26 H 1.09004 * 109.46974 * 299.99909 * 1 2 3 27 27 H 1.09006 * 109.47044 * 59.99766 * 1 2 3 28 28 H 1.09003 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47457 * 239.99979 * 2 1 3 30 30 H 1.09006 * 109.47044 * 120.00234 * 2 1 3 31 31 H 1.09004 * 109.46998 * 60.00105 * 3 2 1 32 32 H 1.08999 * 109.47574 * 299.99979 * 3 2 1 33 33 H 1.09004 * 109.46740 * 60.00202 * 4 3 2 34 34 H 1.09006 * 109.47226 * 300.00377 * 4 3 2 35 35 H 1.09004 * 109.46998 * 60.00360 * 5 4 3 36 36 H 1.08999 * 109.47574 * 300.00234 * 5 4 3 37 37 H 1.08996 * 109.47416 * 300.00046 * 8 6 5 38 38 H 1.08996 * 109.47107 * 60.00914 * 8 6 5 39 39 H 1.09006 * 109.46656 * 179.97438 * 8 6 5 40 40 H 0.97004 * 119.99611 * 25.00118 * 9 6 5 41 41 H 1.08001 * 119.81942 * 0.02562 * 13 12 10 42 42 H 1.07999 * 119.79352 * 180.25491 * 14 13 12 43 43 H 1.08001 * 119.97685 * 179.75712 * 15 14 13 44 44 H 0.96996 * 119.99776 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.20644 * 359.95551 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0026 7 1 5.9727 2.2952 0.8446 8 6 6.1199 4.3219 0.1290 9 7 6.0994 2.3014 -1.2490 10 6 7.3214 1.7348 -1.2959 11 8 8.0176 1.7083 -0.2999 12 6 7.8128 1.1403 -2.5576 13 6 7.0095 1.1654 -3.7029 14 6 7.4643 0.6157 -4.8881 15 6 8.7086 0.0282 -4.9519 16 6 9.5287 -0.0113 -3.8087 17 6 10.8070 -0.6134 -3.8712 18 1 11.6022 -0.2599 -3.2316 19 6 11.0412 -1.6672 -4.7616 20 7 12.2671 -1.9880 -5.0874 21 14 9.6038 -2.6157 -5.4852 22 1 9.2566 -2.0507 -6.8139 23 1 9.9799 -4.0441 -5.6377 24 1 8.4324 -2.5063 -4.5792 25 6 9.0707 0.5508 -2.6051 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8909 35 1 3.7164 3.3985 0.8913 36 1 3.7171 3.3991 -0.8886 37 1 5.7573 4.9114 -0.7130 38 1 5.7559 4.7559 1.0601 39 1 7.2100 4.3217 0.1303 40 1 5.5439 2.3228 -2.0439 41 1 6.0307 1.6200 -3.6626 42 1 6.8383 0.6438 -5.7677 43 1 9.0552 -0.4023 -5.8798 44 1 12.4294 -2.7187 -5.7043 45 1 9.6926 0.5255 -1.7224 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042201036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:42 Heat of formation + Delta-G solvation = -74.533316 kcal Electronic energy + Delta-G solvation = -22426.812181 eV Core-core repulsion = 19213.568787 eV Total energy + Delta-G solvation = -3213.243395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11782 -39.22071 -37.86250 -36.05424 -35.58438 -33.43203 -32.21928 -31.77181 -30.81047 -27.30925 -27.09753 -25.04711 -23.31978 -22.51422 -21.85000 -21.76101 -21.44326 -19.59483 -18.09152 -17.53962 -17.11880 -16.52114 -16.41275 -15.96858 -15.52511 -15.35518 -14.93193 -14.80572 -14.57189 -14.49997 -14.41559 -13.92818 -13.81853 -13.40612 -13.36373 -12.96150 -12.83465 -12.82464 -12.68086 -12.50313 -12.30902 -12.06061 -11.77520 -11.77413 -11.66800 -11.56933 -11.33104 -11.28610 -11.18352 -10.79093 -10.11757 -9.63136 -9.54943 -8.92474 -6.56420 0.19057 0.73842 1.24606 1.41012 1.47899 1.97322 2.12391 2.25017 2.65519 3.45318 3.63695 3.92429 4.03728 4.05150 4.22264 4.26474 4.32520 4.35050 4.41013 4.48897 4.58089 4.65807 4.77914 4.80002 4.85628 4.88746 4.91199 4.96090 4.99614 5.09301 5.10358 5.15868 5.20820 5.29143 5.31838 5.41139 5.42319 5.47233 5.56713 5.60762 5.65948 5.72093 5.83960 6.11022 6.29459 6.62301 6.66574 6.73317 7.29418 8.16815 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.003610 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.055491 B = 7755.349473 C = 8847.532357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.112 4.112 4 C -0.123 4.123 5 C -0.113 4.113 6 C 0.136 3.864 7 H 0.061 0.939 8 C -0.159 4.159 9 N -0.703 5.703 10 C 0.561 3.439 11 O -0.588 6.588 12 C -0.114 4.114 13 C -0.181 4.181 14 C -0.082 4.082 15 C -0.226 4.226 16 C 0.066 3.934 17 C -0.490 4.490 18 H 0.048 0.952 19 C 0.045 3.955 20 N -0.850 5.850 21 Si 0.968 3.032 22 H -0.245 1.245 23 H -0.277 1.277 24 H -0.252 1.252 25 C -0.168 4.168 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.028 0.972 40 H 0.413 0.587 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.106 0.894 44 H 0.295 0.705 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.290 7.529 4.555 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C -0.149 4.149 4 C -0.161 4.161 5 C -0.150 4.150 6 C 0.032 3.968 7 H 0.079 0.921 8 C -0.217 4.217 9 N -0.356 5.356 10 C 0.350 3.650 11 O -0.470 6.470 12 C -0.117 4.117 13 C -0.201 4.201 14 C -0.100 4.100 15 C -0.245 4.245 16 C 0.063 3.937 17 C -0.519 4.519 18 H 0.067 0.933 19 C -0.170 4.170 20 N -0.476 5.476 21 Si 0.790 3.210 22 H -0.170 1.170 23 H -0.204 1.204 24 H -0.176 1.176 25 C -0.189 4.189 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.251 0.749 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.124 0.876 44 H 0.106 0.894 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.593 7.397 5.173 25.261 hybrid contribution 0.715 -0.704 -0.346 1.061 sum -22.878 6.693 4.827 24.321 Atomic orbital electron populations 1.21764 0.95193 1.01734 1.02129 1.21571 0.96449 0.97333 1.01511 1.21563 0.94116 0.96529 1.02715 1.21621 0.96212 0.96646 1.01593 1.21847 0.90925 0.97493 1.04774 1.21132 0.95472 0.94148 0.86026 0.92069 1.22146 1.00211 0.95791 1.03589 1.45881 1.16315 1.58700 1.14667 1.18595 0.81794 0.77035 0.87575 1.90681 1.58013 1.60564 1.37747 1.19755 0.95793 1.02029 0.94084 1.21000 1.00405 1.06929 0.91725 1.21049 0.94639 0.95949 0.98353 1.21389 0.97935 1.08072 0.97111 1.17774 0.92505 0.91876 0.91526 1.19460 0.96049 1.16768 1.19660 0.93346 1.26916 0.99489 0.97110 0.93440 1.69727 1.23612 1.26380 1.27896 0.85452 0.78774 0.76643 0.80093 1.17002 1.20373 1.17576 1.21195 0.96126 1.05019 0.96558 0.92347 0.92327 0.92886 0.92725 0.92810 0.91294 0.91085 0.92729 0.93301 0.88620 0.89422 0.90891 0.89647 0.95279 0.74921 0.83306 0.83430 0.87587 0.89426 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.13 -1.86 5.93 30.59 0.18 -1.68 16 3 C -0.11 -1.41 5.21 30.59 0.16 -1.25 16 4 C -0.12 -1.97 5.10 30.59 0.16 -1.81 16 5 C -0.11 -1.56 4.75 30.59 0.15 -1.41 16 6 C 0.14 3.00 2.57 44.99 0.12 3.11 16 7 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 8 C -0.16 -3.26 9.48 71.98 0.68 -2.58 16 9 N -0.70 -18.44 4.48 -445.36 -2.00 -20.43 16 10 C 0.56 21.48 7.74 86.80 0.67 22.15 16 11 O -0.59 -27.32 16.00 -3.88 -0.06 -27.38 16 12 C -0.11 -4.72 5.87 -20.14 -0.12 -4.84 16 13 C -0.18 -6.13 9.55 22.70 0.22 -5.91 16 14 C -0.08 -2.95 10.01 22.18 0.22 -2.73 16 15 C -0.23 -10.16 7.17 22.77 0.16 -10.00 16 16 C 0.07 3.44 5.10 -21.32 -0.11 3.33 16 17 C -0.49 -28.59 9.57 23.47 0.22 -28.37 16 18 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 19 C 0.04 2.44 5.40 85.25 0.46 2.90 16 20 N -0.85 -47.45 13.93 21.82 0.30 -47.15 16 21 Si 0.97 42.03 24.52 68.60 1.68 43.71 16 22 H -0.25 -9.63 6.71 99.48 0.67 -8.96 16 23 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 24 H -0.25 -11.14 6.86 99.48 0.68 -10.45 16 25 C -0.17 -8.54 9.34 23.01 0.21 -8.32 16 26 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 1.01 7.75 -2.38 -0.02 0.99 16 34 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.41 8.30 6.62 -92.70 -0.61 7.69 16 41 H 0.15 3.48 6.38 -2.91 -0.02 3.46 16 42 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.11 4.68 4.72 -2.91 -0.01 4.67 16 44 H 0.30 14.66 8.30 -92.71 -0.77 13.89 16 45 H 0.09 4.74 7.64 -2.91 -0.02 4.72 16 Total: -1.00 -68.91 363.26 4.31 -64.60 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.28 Total: 25.14 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 4.10 Total: -38.49 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -1.69 Total: -67.58 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.06 Total: -27.38 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.68 Total: 43.71 kcal Total: -68.91 4.31 -64.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042201036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.937 kcal (2) G-P(sol) polarization free energy of solvation -68.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds