Wall clock time and date at job start Tue Mar 31 2020 06:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50706 * 109.47220 * 239.99972 * 2 1 3 5 5 C 1.38360 * 119.85184 * 59.72731 * 4 2 1 6 6 C 1.37956 * 120.14034 * 179.72648 * 5 4 2 7 7 C 1.39579 * 119.85717 * 0.54486 * 6 5 4 8 8 C 1.47833 * 120.14566 * 179.70595 * 7 6 5 9 9 O 1.21559 * 120.00116 * 137.51607 * 8 7 6 10 10 N 1.34777 * 120.00413 * 317.51607 * 8 7 6 11 11 C 1.46496 * 120.00305 * 212.32034 * 10 8 7 12 12 C 1.50699 * 109.47227 * 89.99931 * 11 10 8 13 13 H 1.07997 * 120.00247 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99813 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00423 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99839 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47136 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47362 * 119.99420 * 16 14 12 19 19 H 1.48496 * 109.46945 * 239.99839 * 16 14 12 20 20 C 1.46501 * 119.99690 * 32.31596 * 10 8 7 21 21 C 1.52997 * 109.47481 * 301.61250 * 20 10 8 22 22 C 1.52998 * 109.47128 * 61.61386 * 20 10 8 23 23 C 1.39580 * 119.70821 * 359.72657 * 7 6 5 24 24 C 1.37955 * 119.85330 * 0.02562 * 23 7 6 25 25 H 1.09003 * 109.47352 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47344 * 299.99849 * 1 2 3 27 27 H 1.08999 * 109.47279 * 59.99794 * 1 2 3 28 28 H 1.09005 * 109.47415 * 119.99810 * 2 1 3 29 29 H 1.08992 * 109.46914 * 299.99943 * 3 2 1 30 30 H 1.08998 * 109.47260 * 59.99955 * 3 2 1 31 31 H 1.09005 * 109.47070 * 180.02562 * 3 2 1 32 32 H 1.07996 * 119.92668 * 0.02562 * 5 4 2 33 33 H 1.08003 * 120.07062 * 180.25419 * 6 5 4 34 34 H 1.09001 * 109.47013 * 209.99734 * 11 10 8 35 35 H 1.09008 * 109.47112 * 329.99689 * 11 10 8 36 36 H 0.96997 * 120.00425 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.46952 * 181.61130 * 20 10 8 38 38 H 1.09004 * 109.46769 * 13.48389 * 21 20 10 39 39 H 1.09000 * 109.47661 * 133.47800 * 21 20 10 40 40 H 1.08998 * 109.47100 * 253.48632 * 21 20 10 41 41 H 1.08995 * 109.47552 * 103.64510 * 22 20 10 42 42 H 1.08999 * 109.47471 * 223.64813 * 22 20 10 43 43 H 1.09002 * 109.47218 * 343.64614 * 22 20 10 44 44 H 1.08000 * 120.07066 * 179.97438 * 23 7 6 45 45 H 1.08004 * 119.93063 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6915 -0.2384 -2.4856 6 6 2.1527 -0.8808 -3.6161 7 6 2.9554 -2.0159 -3.4915 8 6 3.4477 -2.7131 -4.6986 9 8 4.5968 -3.1067 -4.7470 10 7 2.6227 -2.9123 -5.7455 11 6 2.7731 -4.1070 -6.5798 12 6 1.9235 -5.2196 -6.0219 13 1 1.3310 -5.0535 -5.1344 14 6 1.9034 -6.4499 -6.6440 15 7 2.6252 -6.6524 -7.7245 16 14 0.8507 -7.8293 -5.9520 17 1 0.1404 -7.3493 -4.7395 18 1 -0.1416 -8.2541 -6.9718 19 1 1.7169 -8.9811 -5.5942 20 6 1.5753 -1.9340 -6.0491 21 6 0.6538 -1.7807 -4.8374 22 6 2.2173 -0.5842 -6.3756 23 6 3.2908 -2.4901 -2.2223 24 6 2.8272 -1.8354 -1.1000 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.0671 0.6376 -2.5806 33 1 1.8894 -0.5089 -4.5953 34 1 2.4544 -3.8819 -7.5976 35 1 3.8184 -4.4163 -6.5864 36 1 2.6107 -7.5178 -8.1623 37 1 0.9950 -2.2770 -6.9057 38 1 1.1197 -2.2411 -3.9661 39 1 0.4840 -0.7219 -4.6416 40 1 -0.2987 -2.2699 -5.0411 41 1 2.1927 -0.4212 -7.4530 42 1 1.6652 0.2114 -5.8751 43 1 3.2515 -0.5809 -6.0312 44 1 3.9111 -3.3681 -2.1192 45 1 3.0856 -2.2015 -0.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:16 Heat of formation + Delta-G solvation = 34.193984 kcal Electronic energy + Delta-G solvation = -23943.148102 eV Core-core repulsion = 20734.619477 eV Total energy + Delta-G solvation = -3208.528625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.29840 -39.73333 -38.05494 -36.31478 -35.17217 -33.47796 -31.46984 -31.06785 -29.07995 -27.98231 -27.87770 -25.79528 -24.27415 -23.94109 -22.89372 -21.14318 -19.83215 -18.69625 -18.18520 -17.55349 -16.90599 -16.47099 -16.39015 -15.99451 -15.49881 -15.26122 -15.00115 -14.70112 -14.50703 -14.26307 -14.01627 -14.00292 -13.62652 -13.47311 -13.34182 -13.20872 -12.99713 -12.78233 -12.70180 -12.44529 -12.21458 -12.17980 -12.08446 -11.83478 -11.77790 -11.66807 -11.52814 -11.12365 -10.81861 -10.68796 -9.72392 -9.39813 -9.13836 -8.25286 -6.42462 0.05384 0.53390 1.34228 1.36087 1.48233 1.65847 2.25159 2.39369 2.83828 3.03114 3.58441 3.79687 3.82232 3.87052 3.99621 4.12727 4.23676 4.29894 4.40096 4.46457 4.57492 4.59756 4.66325 4.69799 4.84828 4.91659 4.92392 4.99483 4.99692 5.04761 5.08923 5.12331 5.15076 5.17766 5.22941 5.37603 5.39819 5.45968 5.48983 5.54397 5.57897 5.74985 5.88301 6.02833 6.04071 6.65933 6.73655 7.15715 7.32800 8.81247 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019102 B = 0.004630 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.454863 B = 6046.631104 C = 6480.540066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.043 4.043 5 C -0.149 4.149 6 C -0.077 4.077 7 C -0.179 4.179 8 C 0.563 3.437 9 O -0.592 6.592 10 N -0.613 5.613 11 C 0.263 3.737 12 C -0.546 4.546 13 H 0.056 0.944 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.969 3.031 17 H -0.266 1.266 18 H -0.268 1.268 19 H -0.281 1.281 20 C 0.125 3.875 21 C -0.194 4.194 22 C -0.172 4.172 23 C -0.081 4.081 24 C -0.147 4.147 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.161 0.839 33 H 0.186 0.814 34 H 0.022 0.978 35 H -0.005 1.005 36 H 0.268 0.732 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.043 0.957 44 H 0.101 0.899 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 18.878 13.715 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.199 4.199 4 C -0.043 4.043 5 C -0.166 4.166 6 C -0.093 4.093 7 C -0.182 4.182 8 C 0.354 3.646 9 O -0.473 6.473 10 N -0.345 5.345 11 C 0.142 3.858 12 C -0.585 4.585 13 H 0.074 0.926 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.193 1.193 19 H -0.206 1.206 20 C 0.022 3.978 21 C -0.250 4.250 22 C -0.229 4.229 23 C -0.100 4.100 24 C -0.165 4.165 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.178 0.822 33 H 0.202 0.798 34 H 0.040 0.960 35 H 0.013 0.987 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.062 0.938 44 H 0.120 0.880 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.791 18.537 13.514 24.227 hybrid contribution 0.271 -1.815 -0.298 1.859 sum -7.520 16.722 13.217 22.602 Atomic orbital electron populations 1.21858 0.93212 1.01882 1.03072 1.20228 0.96730 0.96516 0.94064 1.21850 1.00827 0.94203 1.03038 1.20352 0.94187 0.93634 0.96111 1.21142 1.03084 1.01812 0.90610 1.23049 0.90756 0.92019 1.03515 1.19961 1.05104 1.00525 0.92607 1.18868 0.84082 0.77860 0.83757 1.90641 1.19651 1.53954 1.83088 1.47997 1.33228 1.23601 1.29696 1.18807 0.95375 0.81895 0.89710 1.21769 1.27339 0.97224 1.12134 0.92618 1.25883 0.96922 1.01068 0.95100 1.70067 1.41355 1.24865 1.20380 0.85346 0.78427 0.78247 0.78680 1.19043 1.19262 1.20640 1.21390 0.88372 0.88683 0.99396 1.23689 0.99155 1.03980 0.98176 1.22661 1.00694 0.95709 1.03832 1.21132 0.97747 0.99189 0.91971 1.21062 1.00537 0.97029 0.97834 0.93497 0.90898 0.91547 0.90091 0.91615 0.90907 0.93323 0.82163 0.79766 0.95978 0.98715 0.92286 0.89336 0.90399 0.86839 0.92554 0.90428 0.86826 0.93813 0.88031 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.00 71.98 0.65 -1.11 16 2 C -0.06 -0.82 3.09 -11.54 -0.04 -0.86 16 3 C -0.14 -1.67 9.01 71.98 0.65 -1.02 16 4 C -0.04 -0.89 4.79 -19.80 -0.09 -0.99 16 5 C -0.15 -2.99 8.43 22.23 0.19 -2.80 16 6 C -0.08 -2.02 4.88 22.53 0.11 -1.91 16 7 C -0.18 -6.57 4.26 -20.09 -0.09 -6.65 16 8 C 0.56 26.61 5.87 86.78 0.51 27.12 16 9 O -0.59 -33.48 16.79 -3.90 -0.07 -33.54 16 10 N -0.61 -28.13 2.38 -805.55 -1.92 -30.04 16 11 C 0.26 14.87 5.32 85.63 0.46 15.32 16 12 C -0.55 -32.03 9.39 25.60 0.24 -31.79 16 13 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 14 C 0.01 0.55 5.46 84.66 0.46 1.02 16 15 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 16 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 20 C 0.12 4.13 3.27 44.99 0.15 4.27 16 21 C -0.19 -5.29 7.71 71.98 0.56 -4.73 16 22 C -0.17 -4.28 8.36 71.98 0.60 -3.67 16 23 C -0.08 -2.84 9.67 22.53 0.22 -2.62 16 24 C -0.15 -3.83 9.65 22.23 0.21 -3.61 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.72 7.36 -2.39 -0.02 0.70 16 28 H 0.08 1.12 7.87 -2.38 -0.02 1.10 16 29 H 0.06 0.68 7.39 -2.39 -0.02 0.67 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.16 2.02 7.08 -2.91 -0.02 2.00 16 33 H 0.19 4.19 1.07 -4.02 0.00 4.19 16 34 H 0.02 1.26 7.93 -2.39 -0.02 1.25 16 35 H -0.01 -0.35 7.36 -2.38 -0.02 -0.36 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.09 3.02 7.81 -2.39 -0.02 3.00 16 38 H 0.08 2.55 3.99 -11.41 -0.05 2.50 16 39 H 0.11 2.04 5.23 -2.39 -0.01 2.02 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.11 1.78 6.18 -2.39 -0.01 1.77 16 43 H 0.04 1.30 6.82 -2.39 -0.02 1.29 16 44 H 0.10 3.90 8.06 -2.91 -0.02 3.87 16 45 H 0.14 2.99 7.94 -2.91 -0.02 2.97 16 Total: -1.00 -77.04 348.52 6.05 -70.99 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.94 Total: 15.94 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.78 Total: -14.03 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -1.63 Total: -86.55 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.07 Total: -33.54 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -77.04 6.05 -70.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.186 kcal (2) G-P(sol) polarization free energy of solvation -77.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds