Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46687 * 2 1 4 4 C 1.38355 * 119.85455 * 269.72669 * 3 2 1 5 5 C 1.37960 * 120.14528 * 179.73072 * 4 3 2 6 6 C 1.39576 * 119.84977 * 0.54470 * 5 4 3 7 7 C 1.47847 * 120.13970 * 179.70683 * 6 5 4 8 8 O 1.21552 * 119.99697 * 150.07756 * 7 6 5 9 9 N 1.34772 * 120.00157 * 330.07621 * 7 6 5 10 10 C 1.46500 * 120.00254 * 6.04444 * 9 7 6 11 11 C 1.50698 * 109.46957 * 98.59695 * 10 9 7 12 12 H 1.07999 * 119.99895 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00026 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99943 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99921 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.47384 * 90.00023 * 15 13 11 17 17 H 1.48502 * 109.47078 * 210.00169 * 15 13 11 18 18 H 1.48496 * 109.47243 * 329.99764 * 15 13 11 19 19 C 1.46507 * 119.99891 * 186.05014 * 9 7 6 20 20 C 1.52998 * 109.47194 * 95.54053 * 19 9 7 21 21 C 1.53000 * 109.47235 * 174.79917 * 20 19 9 22 22 C 1.52998 * 109.47289 * 294.79783 * 20 19 9 23 23 C 1.39574 * 119.71525 * 359.73009 * 6 5 4 24 24 C 1.37968 * 119.84903 * 359.97438 * 23 6 5 25 25 H 1.09008 * 109.47299 * 299.99733 * 1 2 3 26 26 H 1.09006 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47358 * 59.99861 * 1 2 3 28 28 H 1.08998 * 109.47229 * 119.99751 * 2 1 3 29 29 H 1.08996 * 109.46966 * 240.00105 * 2 1 3 30 30 H 1.08003 * 119.92559 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.07143 * 180.25206 * 5 4 3 32 32 H 1.09000 * 109.47433 * 218.59733 * 10 9 7 33 33 H 1.09004 * 109.46699 * 338.59893 * 10 9 7 34 34 H 0.97002 * 120.00185 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47154 * 215.54039 * 19 9 7 36 36 H 1.08997 * 109.46906 * 335.54462 * 19 9 7 37 37 H 1.09000 * 109.47212 * 54.79396 * 20 19 9 38 38 H 1.08995 * 109.47053 * 59.99865 * 21 20 19 39 39 H 1.09000 * 109.47316 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.47062 * 299.99832 * 21 20 19 41 41 H 1.09006 * 109.47291 * 305.94826 * 22 20 19 42 42 H 1.09006 * 109.47330 * 65.94692 * 22 20 19 43 43 H 1.09002 * 109.47413 * 185.94575 * 22 20 19 44 44 H 1.07995 * 120.07725 * 179.97438 * 23 6 5 45 45 H 1.07997 * 119.92246 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2672 2.0683 -1.1999 5 6 2.7217 3.3709 -1.2070 6 6 2.9553 4.0317 0.0001 7 6 3.4486 5.4254 0.0000 8 8 3.1562 6.1736 0.9123 9 7 4.2224 5.8664 -1.0115 10 6 4.4661 5.0096 -2.1746 11 6 3.5367 5.4048 -3.2931 12 1 2.8345 6.2130 -3.1515 13 6 3.5822 4.7339 -4.4967 14 7 2.7708 5.0785 -5.4727 15 14 4.7964 3.3356 -4.7413 16 1 4.1646 2.0547 -4.3347 17 1 5.1861 3.2630 -6.1724 18 1 6.0037 3.5775 -3.9112 19 6 4.8201 7.2025 -0.9478 20 6 6.2459 7.0980 -0.4030 21 6 6.9149 8.4729 -0.4577 22 6 6.2036 6.6088 1.0461 23 6 2.7217 3.3709 1.2071 24 6 2.2614 2.0703 1.2000 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.0906 1.5542 -2.1332 31 1 2.9008 3.8765 -2.1443 32 1 5.4992 5.1267 -2.5021 33 1 4.2866 3.9692 -1.9034 34 1 2.8030 4.6067 -6.3197 35 1 4.8439 7.6378 -1.9468 36 1 4.2251 7.8356 -0.2896 37 1 6.8153 6.3924 -1.0081 38 1 6.3455 9.1783 0.1474 39 1 7.9309 8.3983 -0.0700 40 1 6.9451 8.8214 -1.4901 41 1 5.5479 7.2557 1.6290 42 1 5.8244 5.5872 1.0739 43 1 7.2084 6.6349 1.4679 44 1 2.9009 3.8764 2.1444 45 1 2.0807 1.5577 2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -10.139015 kcal Electronic energy + Delta-G solvation = -23836.959843 eV Core-core repulsion = 20626.508795 eV Total energy + Delta-G solvation = -3210.451048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01603 -38.26174 -36.01295 -34.72791 -33.56380 -32.44034 -30.55971 -29.43219 -28.23785 -26.85645 -25.97427 -23.89763 -22.66035 -22.19578 -21.01963 -19.91931 -18.79725 -17.12068 -16.66262 -16.05081 -15.40817 -15.04289 -14.64461 -14.42735 -14.23767 -13.87699 -13.73513 -13.46783 -13.17724 -13.00691 -12.91410 -12.69110 -12.32030 -12.16288 -11.96032 -11.72286 -11.47816 -11.42449 -11.15627 -11.07046 -10.96337 -10.84064 -10.70172 -10.61135 -10.30366 -10.22140 -9.97138 -9.69688 -9.10067 -8.88882 -8.45092 -8.20498 -7.72242 -6.34999 -4.37704 1.39092 1.83889 3.09498 3.18907 3.21051 3.42922 3.81546 4.15172 4.29189 4.89682 4.93334 5.03296 5.17631 5.23723 5.28628 5.38197 5.40615 5.44350 5.45407 5.64911 5.81149 5.85880 5.87217 5.92232 5.96390 5.98489 6.11855 6.17843 6.22362 6.24981 6.31028 6.34303 6.36857 6.44089 6.52142 6.60187 6.64375 6.73251 6.78903 6.94909 7.02985 7.25787 7.35599 7.44760 8.05598 8.35143 8.73444 8.90788 9.22610 10.76371 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.007055 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.626176 B = 3968.108460 C = 5805.630983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.069 4.069 4 C -0.136 4.136 5 C -0.099 4.099 6 C -0.136 4.136 7 C 0.560 3.440 8 O -0.564 6.564 9 N -0.581 5.581 10 C 0.179 3.821 11 C -0.544 4.544 12 H 0.083 0.917 13 C 0.081 3.919 14 N -0.879 5.879 15 Si 0.861 3.139 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.261 1.261 19 C 0.123 3.877 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.067 4.067 24 C -0.143 4.143 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.195 0.805 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.124 0.876 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 -5.947 9.279 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.069 4.069 4 C -0.154 4.154 5 C -0.116 4.116 6 C -0.139 4.139 7 C 0.350 3.650 8 O -0.446 6.446 9 N -0.309 5.309 10 C 0.059 3.941 11 C -0.582 4.582 12 H 0.101 0.899 13 C -0.124 4.124 14 N -0.515 5.515 15 Si 0.686 3.314 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.185 1.185 19 C -0.001 4.001 20 C -0.133 4.133 21 C -0.199 4.199 22 C -0.195 4.195 23 C -0.086 4.086 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.211 0.789 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.142 0.858 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.909 -5.580 9.519 11.411 hybrid contribution 0.578 -0.791 -0.461 1.083 sum 3.487 -6.372 9.058 11.610 Atomic orbital electron populations 1.21744 0.94787 1.01355 1.02481 1.20559 0.96193 0.92974 1.02548 1.20060 0.97520 0.95847 0.93466 1.21094 1.01424 0.95611 0.97270 1.23390 0.92026 0.94648 1.01517 1.19971 1.04899 0.94743 0.94296 1.18245 0.78095 0.86969 0.81701 1.90662 1.59289 1.57246 1.37369 1.47696 1.47610 1.16386 1.19239 1.20657 0.97547 0.91916 0.84025 1.21340 1.20642 1.20240 0.95970 0.89933 1.24909 0.95095 0.96941 0.95492 1.69886 1.36628 1.40720 1.04289 0.87070 0.82627 0.83203 0.78498 1.19189 1.20542 1.18492 1.21429 0.92182 0.84510 1.01930 1.21505 0.97132 0.97437 0.97194 1.21743 0.99860 0.96542 1.01765 1.21758 1.00403 1.01454 0.95862 1.21110 0.96303 0.94003 0.97199 1.20785 1.03090 0.94985 0.97209 0.92586 0.92669 0.92288 0.91296 0.91086 0.86049 0.78887 0.95205 0.92540 0.92050 0.90130 0.90320 0.91203 0.92710 0.92954 0.92517 0.92338 0.93200 0.93686 0.85786 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 37.16 0.37 -1.21 16 2 C -0.09 -1.00 6.06 -27.88 -0.17 -1.16 16 3 C -0.07 -1.03 5.14 -104.53 -0.54 -1.57 16 4 C -0.14 -2.38 9.68 -39.64 -0.38 -2.77 16 5 C -0.10 -1.99 7.48 -39.18 -0.29 -2.28 16 6 C -0.14 -2.72 5.58 -104.97 -0.59 -3.31 16 7 C 0.56 12.04 6.12 -12.33 -0.08 11.96 16 8 O -0.56 -12.87 15.67 5.32 0.08 -12.78 16 9 N -0.58 -12.14 2.28 -176.17 -0.40 -12.55 16 10 C 0.18 3.96 3.74 -5.19 -0.02 3.94 16 11 C -0.54 -13.88 8.04 -34.44 -0.28 -14.15 16 12 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 13 C 0.08 2.10 5.35 -17.82 -0.10 2.01 16 14 N -0.88 -24.54 13.96 55.43 0.77 -23.77 16 15 Si 0.86 19.00 27.36 -169.99 -4.65 14.35 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 19 C 0.12 2.27 4.98 -4.04 -0.02 2.25 16 20 C -0.11 -1.77 3.12 -90.62 -0.28 -2.05 16 21 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 22 C -0.14 -2.14 8.21 37.16 0.30 -1.83 16 23 C -0.07 -1.16 9.60 -39.18 -0.38 -1.54 16 24 C -0.14 -2.13 9.68 -39.64 -0.38 -2.51 16 25 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.20 4.36 2.96 -52.49 -0.16 4.21 16 32 H 0.03 0.65 7.04 -51.93 -0.37 0.29 16 33 H 0.06 1.24 3.48 -51.96 -0.18 1.06 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.08 1.52 8.11 -51.93 -0.42 1.09 16 36 H 0.08 1.50 7.20 -51.93 -0.37 1.12 16 37 H 0.07 1.13 7.99 -51.93 -0.41 0.72 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.86 7.04 -51.93 -0.37 0.49 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.12 2.03 7.92 -52.49 -0.42 1.61 16 45 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -28.29 357.41 -8.64 -36.94 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.35 Total: 8.12 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.48 Total: -15.70 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.37 Total: -36.31 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.65 Total: 14.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.29 -8.64 -36.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.797 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds