Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46687 * 2 1 4 4 C 1.38355 * 119.85455 * 269.72669 * 3 2 1 5 5 C 1.37960 * 120.14528 * 179.73072 * 4 3 2 6 6 C 1.39576 * 119.84977 * 0.54470 * 5 4 3 7 7 C 1.47847 * 120.13970 * 179.70683 * 6 5 4 8 8 O 1.21552 * 119.99697 * 150.07756 * 7 6 5 9 9 N 1.34772 * 120.00157 * 330.07621 * 7 6 5 10 10 C 1.46500 * 120.00254 * 6.04444 * 9 7 6 11 11 C 1.50698 * 109.46957 * 98.59695 * 10 9 7 12 12 H 1.07999 * 119.99895 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00026 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99943 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99921 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.47384 * 90.00023 * 15 13 11 17 17 H 1.48502 * 109.47078 * 210.00169 * 15 13 11 18 18 H 1.48496 * 109.47243 * 329.99764 * 15 13 11 19 19 C 1.46507 * 119.99891 * 186.05014 * 9 7 6 20 20 C 1.52998 * 109.47194 * 95.54053 * 19 9 7 21 21 C 1.53000 * 109.47235 * 174.79917 * 20 19 9 22 22 C 1.52998 * 109.47289 * 294.79783 * 20 19 9 23 23 C 1.39574 * 119.71525 * 359.73009 * 6 5 4 24 24 C 1.37968 * 119.84903 * 359.97438 * 23 6 5 25 25 H 1.09008 * 109.47299 * 299.99733 * 1 2 3 26 26 H 1.09006 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47358 * 59.99861 * 1 2 3 28 28 H 1.08998 * 109.47229 * 119.99751 * 2 1 3 29 29 H 1.08996 * 109.46966 * 240.00105 * 2 1 3 30 30 H 1.08003 * 119.92559 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.07143 * 180.25206 * 5 4 3 32 32 H 1.09000 * 109.47433 * 218.59733 * 10 9 7 33 33 H 1.09004 * 109.46699 * 338.59893 * 10 9 7 34 34 H 0.97002 * 120.00185 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47154 * 215.54039 * 19 9 7 36 36 H 1.08997 * 109.46906 * 335.54462 * 19 9 7 37 37 H 1.09000 * 109.47212 * 54.79396 * 20 19 9 38 38 H 1.08995 * 109.47053 * 59.99865 * 21 20 19 39 39 H 1.09000 * 109.47316 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.47062 * 299.99832 * 21 20 19 41 41 H 1.09006 * 109.47291 * 305.94826 * 22 20 19 42 42 H 1.09006 * 109.47330 * 65.94692 * 22 20 19 43 43 H 1.09002 * 109.47413 * 185.94575 * 22 20 19 44 44 H 1.07995 * 120.07725 * 179.97438 * 23 6 5 45 45 H 1.07997 * 119.92246 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2672 2.0683 -1.1999 5 6 2.7217 3.3709 -1.2070 6 6 2.9553 4.0317 0.0001 7 6 3.4486 5.4254 0.0000 8 8 3.1562 6.1736 0.9123 9 7 4.2224 5.8664 -1.0115 10 6 4.4661 5.0096 -2.1746 11 6 3.5367 5.4048 -3.2931 12 1 2.8345 6.2130 -3.1515 13 6 3.5822 4.7339 -4.4967 14 7 2.7708 5.0785 -5.4727 15 14 4.7964 3.3356 -4.7413 16 1 4.1646 2.0547 -4.3347 17 1 5.1861 3.2630 -6.1724 18 1 6.0037 3.5775 -3.9112 19 6 4.8201 7.2025 -0.9478 20 6 6.2459 7.0980 -0.4030 21 6 6.9149 8.4729 -0.4577 22 6 6.2036 6.6088 1.0461 23 6 2.7217 3.3709 1.2071 24 6 2.2614 2.0703 1.2000 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.0906 1.5542 -2.1332 31 1 2.9008 3.8765 -2.1443 32 1 5.4992 5.1267 -2.5021 33 1 4.2866 3.9692 -1.9034 34 1 2.8030 4.6067 -6.3197 35 1 4.8439 7.6378 -1.9468 36 1 4.2251 7.8356 -0.2896 37 1 6.8153 6.3924 -1.0081 38 1 6.3455 9.1783 0.1474 39 1 7.9309 8.3983 -0.0700 40 1 6.9451 8.8214 -1.4901 41 1 5.5479 7.2557 1.6290 42 1 5.8244 5.5872 1.0739 43 1 7.2084 6.6349 1.4679 44 1 2.9009 3.8764 2.1444 45 1 2.0807 1.5577 2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = -23.882510 kcal Electronic energy + Delta-G solvation = -23837.555806 eV Core-core repulsion = 20626.508795 eV Total energy + Delta-G solvation = -3211.047011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56509 -39.65314 -37.58181 -36.22259 -34.80679 -34.28626 -31.94616 -30.65400 -30.06429 -28.05940 -27.36004 -25.19678 -24.39176 -23.57083 -22.23356 -21.25155 -20.35821 -19.10258 -18.22234 -17.64099 -16.71167 -16.55963 -16.17364 -15.97284 -15.57414 -15.34785 -14.99478 -14.74407 -14.60860 -14.46668 -14.22416 -14.11704 -13.75352 -13.42454 -13.17499 -13.09075 -12.91701 -12.71445 -12.66986 -12.45310 -12.41248 -12.00882 -11.94156 -11.87110 -11.82754 -11.71918 -11.58442 -11.42414 -10.87740 -10.70812 -9.83767 -9.61780 -9.38862 -8.37450 -6.45473 -0.00705 0.47529 1.35315 1.37463 1.46829 1.86464 2.23171 2.27965 2.85081 2.96255 3.61465 3.87341 3.92291 3.96176 4.02415 4.15126 4.16091 4.33107 4.49256 4.54703 4.58427 4.61088 4.65036 4.68401 4.73580 4.76421 4.82326 4.92228 4.99264 5.02790 5.05256 5.09881 5.13540 5.17200 5.17796 5.32893 5.38908 5.40246 5.41958 5.47170 5.52537 5.70163 5.71622 6.05746 6.10735 6.55613 6.63244 7.14415 7.27463 8.78043 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.007055 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.626176 B = 3968.108460 C = 5805.630983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.057 4.057 4 C -0.145 4.145 5 C -0.122 4.122 6 C -0.163 4.163 7 C 0.554 3.446 8 O -0.587 6.587 9 N -0.586 5.586 10 C 0.191 3.809 11 C -0.541 4.541 12 H 0.031 0.969 13 C 0.032 3.968 14 N -0.930 5.930 15 Si 0.923 3.077 16 H -0.250 1.250 17 H -0.279 1.279 18 H -0.243 1.243 19 C 0.118 3.882 20 C -0.107 4.107 21 C -0.135 4.135 22 C -0.129 4.129 23 C -0.070 4.070 24 C -0.129 4.129 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.166 0.834 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.272 0.728 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 -8.800 11.056 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.057 4.057 4 C -0.163 4.163 5 C -0.140 4.140 6 C -0.165 4.165 7 C 0.345 3.655 8 O -0.470 6.470 9 N -0.314 5.314 10 C 0.070 3.930 11 C -0.579 4.579 12 H 0.050 0.950 13 C -0.169 4.169 14 N -0.568 5.568 15 Si 0.744 3.256 16 H -0.174 1.174 17 H -0.205 1.205 18 H -0.166 1.166 19 C -0.004 4.004 20 C -0.126 4.126 21 C -0.193 4.193 22 C -0.187 4.187 23 C -0.089 4.089 24 C -0.147 4.147 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.146 0.854 31 H 0.183 0.817 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.091 0.909 44 H 0.149 0.851 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.260 -8.423 11.309 14.731 hybrid contribution 0.025 0.117 -0.953 0.960 sum 4.285 -8.306 10.356 13.950 Atomic orbital electron populations 1.21746 0.94075 1.02706 1.01792 1.20666 0.96612 0.90508 1.04305 1.20473 0.95349 0.97471 0.92388 1.21235 1.01447 0.94684 0.98896 1.23066 0.94537 0.96030 1.00357 1.19979 1.06936 0.94139 0.95495 1.18634 0.77714 0.87806 0.81396 1.90625 1.60150 1.58063 1.38157 1.47779 1.47751 1.16974 1.18855 1.20470 0.96601 0.92753 0.83223 1.21321 1.20263 1.18732 0.97563 0.95049 1.25699 0.96845 0.99529 0.94798 1.70029 1.38959 1.42683 1.05089 0.86071 0.80694 0.80232 0.78553 1.17376 1.20477 1.16633 1.21566 0.94113 0.83475 1.01268 1.21458 0.94863 0.99283 0.97029 1.21710 1.00765 0.94579 1.02267 1.21680 1.01609 0.99798 0.95599 1.21299 0.96160 0.95076 0.96342 1.21214 1.00784 0.93826 0.98859 0.92464 0.90360 0.93862 0.88649 0.90316 0.85417 0.81718 0.94573 0.91283 0.91858 0.91264 0.91360 0.91445 0.92350 0.90691 0.92282 0.93428 0.95252 0.90915 0.85117 0.82341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.89 71.98 0.71 -1.91 16 2 C -0.08 -1.60 6.06 29.85 0.18 -1.41 16 3 C -0.06 -1.53 5.14 -19.81 -0.10 -1.63 16 4 C -0.14 -4.90 9.68 22.23 0.22 -4.68 16 5 C -0.12 -5.00 7.48 22.53 0.17 -4.83 16 6 C -0.16 -6.57 5.58 -20.09 -0.11 -6.69 16 7 C 0.55 24.64 6.12 86.79 0.53 25.18 16 8 O -0.59 -27.69 15.67 -3.88 -0.06 -27.75 16 9 N -0.59 -25.49 2.28 -829.57 -1.89 -27.39 16 10 C 0.19 8.64 3.74 85.63 0.32 8.96 16 11 C -0.54 -29.05 8.04 25.60 0.21 -28.85 16 12 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 13 C 0.03 1.73 5.35 84.65 0.45 2.18 16 14 N -0.93 -54.10 13.96 21.45 0.30 -53.80 16 15 Si 0.92 39.13 27.36 68.60 1.88 41.00 16 16 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 19 C 0.12 4.58 4.98 86.38 0.43 5.01 16 20 C -0.11 -3.30 3.12 -10.80 -0.03 -3.34 16 21 C -0.14 -3.29 9.19 71.98 0.66 -2.62 16 22 C -0.13 -3.93 8.21 71.98 0.59 -3.34 16 23 C -0.07 -2.32 9.60 22.53 0.22 -2.11 16 24 C -0.13 -3.42 9.68 22.23 0.22 -3.21 16 25 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 26 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 1.38 8.08 -2.39 -0.02 1.37 16 29 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 30 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.17 7.72 2.96 -2.91 -0.01 7.71 16 32 H 0.04 1.58 7.04 -2.39 -0.02 1.57 16 33 H 0.07 3.05 3.48 -2.42 -0.01 3.04 16 34 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 35 H 0.07 2.77 8.11 -2.39 -0.02 2.75 16 36 H 0.07 2.74 7.20 -2.39 -0.02 2.73 16 37 H 0.07 2.13 7.99 -2.39 -0.02 2.11 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.03 0.99 7.04 -2.38 -0.02 0.97 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.13 4.11 7.92 -2.91 -0.02 4.09 16 45 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -65.11 357.41 5.78 -59.33 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.90 Total: 31.90 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 4.65 Total: -23.29 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.59 Total: -81.19 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.06 Total: -27.75 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.88 Total: 41.00 kcal Total: -65.11 5.78 -59.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.446 kcal (2) G-P(sol) polarization free energy of solvation -65.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds