Wall clock time and date at job start Tue Mar 31 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 C 1.53002 * 109.47409 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47409 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46523 * 305.00293 * 5 4 3 7 7 C 1.53004 * 109.47055 * 64.99947 * 5 4 3 8 8 C 1.53002 * 109.46773 * 53.57200 * 7 5 4 9 9 C 1.50697 * 109.46976 * 185.00114 * 5 4 3 10 10 O 1.21272 * 120.00118 * 308.70393 * 9 5 4 11 11 N 1.34778 * 119.99879 * 128.70245 * 9 5 4 12 12 C 1.39233 * 120.00222 * 172.12662 * 11 9 5 13 13 C 1.39481 * 119.83331 * 25.88406 * 12 11 9 14 14 C 1.36377 * 120.17019 * 179.71719 * 13 12 11 15 15 C 1.40866 * 119.82526 * 0.57330 * 14 13 12 16 16 C 1.41153 * 120.16244 * 179.67924 * 15 14 13 17 17 H 1.08001 * 119.99687 * 194.24721 * 16 15 14 18 18 C 1.39907 * 119.99780 * 14.24658 * 16 15 14 19 19 N 1.30867 * 120.00384 * 21.91572 * 18 16 15 20 20 Si 1.86799 * 119.99715 * 201.91677 * 18 16 15 21 21 H 1.48499 * 109.47395 * 59.99934 * 20 18 16 22 22 H 1.48497 * 109.47216 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47352 * 300.00058 * 20 18 16 24 24 C 1.40870 * 119.67382 * 359.69795 * 15 14 13 25 25 C 1.36378 * 119.82669 * 0.02562 * 24 15 14 26 26 H 1.09003 * 109.47248 * 299.99945 * 1 2 3 27 27 H 1.08999 * 109.46958 * 59.99861 * 1 2 3 28 28 H 1.08997 * 109.47493 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47108 * 239.99401 * 2 1 3 30 30 H 1.09005 * 109.46996 * 119.99719 * 2 1 3 31 31 H 1.09003 * 109.46937 * 59.99864 * 3 2 1 32 32 H 1.08999 * 109.47240 * 299.99966 * 3 2 1 33 33 H 1.08998 * 109.46445 * 59.99614 * 4 3 2 34 34 H 1.08999 * 109.47181 * 300.00356 * 4 3 2 35 35 H 1.08995 * 109.46989 * 293.57043 * 7 5 4 36 36 H 1.08995 * 109.46783 * 173.56818 * 7 5 4 37 37 H 1.08996 * 109.47228 * 55.42730 * 8 7 5 38 38 H 1.08996 * 109.47316 * 295.42808 * 8 7 5 39 39 H 1.09002 * 109.46742 * 175.42664 * 8 7 5 40 40 H 0.97007 * 119.99854 * 352.13218 * 11 9 5 41 41 H 1.08004 * 119.91344 * 359.97438 * 13 12 11 42 42 H 1.07995 * 120.08242 * 180.25022 * 14 13 12 43 43 H 0.96998 * 120.00274 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.08362 * 179.97438 * 24 15 14 45 45 H 1.08000 * 119.90846 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0013 6 1 3.6457 3.4242 -0.8406 7 6 3.6748 3.5686 1.3087 8 6 4.1481 2.7244 2.4937 9 6 5.5820 2.8867 -0.1219 10 8 6.2526 2.2070 0.6257 11 7 6.1800 3.6438 -1.0631 12 6 7.5661 3.7749 -1.0738 13 6 8.3624 2.7715 -0.5219 14 6 9.7209 2.8903 -0.5339 15 6 10.3192 4.0356 -1.0948 16 6 11.7244 4.1689 -1.1049 17 1 12.1743 5.1274 -1.3177 18 6 12.5342 3.0594 -0.8392 19 7 12.0618 1.8501 -1.0033 20 14 14.2899 3.3043 -0.2503 21 1 14.2823 4.0576 1.0295 22 1 14.9311 1.9813 -0.0414 23 1 15.0520 4.0688 -1.2700 24 6 9.5082 5.0474 -1.6453 25 6 8.1512 4.9118 -1.6310 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9336 0.9285 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 2.5901 3.6697 1.3448 36 1 4.1336 4.5560 1.3597 37 1 5.2219 2.5552 2.4133 38 1 3.6280 1.7666 2.4882 39 1 3.9317 3.2501 3.4237 40 1 5.6447 4.0974 -1.7329 41 1 7.9019 1.8964 -0.0876 42 1 10.3362 2.1106 -0.1097 43 1 12.6234 1.0809 -0.8194 44 1 9.9598 5.9284 -2.0767 45 1 7.5282 5.6865 -2.0530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055351756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:12 Heat of formation + Delta-G solvation = -44.806548 kcal Electronic energy + Delta-G solvation = -22671.980310 eV Core-core repulsion = 19460.025965 eV Total energy + Delta-G solvation = -3211.954345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.01766 -37.65763 -36.39488 -34.48499 -33.93818 -32.93551 -30.08173 -29.44036 -29.05760 -27.15010 -24.83763 -23.64913 -22.27235 -21.37449 -21.02998 -20.06070 -18.97918 -17.33189 -16.66337 -16.39153 -15.87473 -15.17214 -15.09885 -14.55264 -14.18209 -13.89932 -13.49428 -13.24888 -13.15452 -12.83655 -12.63991 -12.54775 -12.28001 -12.07078 -11.79502 -11.50068 -11.49473 -11.28867 -11.17763 -11.04211 -11.00265 -10.97409 -10.85034 -10.61118 -10.51856 -10.41187 -9.95297 -9.69323 -9.35984 -8.89278 -8.45278 -7.44565 -7.00502 -6.71351 -4.24201 2.63386 3.01411 3.06910 3.10113 3.19394 3.45238 3.80238 3.92093 4.62007 4.65187 4.72798 4.84621 4.96124 5.03529 5.10138 5.31143 5.42755 5.43701 5.56998 5.62440 5.69322 5.72147 5.79744 5.82925 5.87852 5.92752 6.02061 6.10384 6.18014 6.18836 6.24960 6.36481 6.50307 6.60853 6.92076 7.00721 7.12386 7.21281 7.37624 7.67615 7.75343 8.09044 8.11182 8.29497 8.42284 8.70334 8.85780 8.92532 9.08305 10.13577 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029130 B = 0.003005 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.961570 B = 9315.382944 C = 9576.805702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.103 4.103 6 H 0.080 0.920 7 C -0.106 4.106 8 C -0.165 4.165 9 C 0.501 3.499 10 O -0.526 6.526 11 N -0.649 5.649 12 C -0.013 4.013 13 C -0.101 4.101 14 C -0.172 4.172 15 C 0.097 3.903 16 C -0.452 4.452 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.781 5.781 20 Si 0.909 3.091 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.222 4.222 25 C -0.108 4.108 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.393 0.607 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.282 0.718 44 H 0.093 0.907 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 -0.728 1.639 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.147 4.147 5 C -0.125 4.125 6 H 0.098 0.902 7 C -0.144 4.144 8 C -0.222 4.222 9 C 0.288 3.712 10 O -0.403 6.403 11 N -0.290 5.290 12 C -0.105 4.105 13 C -0.120 4.120 14 C -0.192 4.192 15 C 0.094 3.906 16 C -0.481 4.481 17 H 0.095 0.905 18 C -0.145 4.145 19 N -0.406 5.406 20 Si 0.733 3.267 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.242 4.242 25 C -0.128 4.128 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.226 0.774 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.786 -1.456 2.191 16.991 hybrid contribution 0.518 0.459 -0.285 0.749 sum -16.267 -0.997 1.906 16.409 Atomic orbital electron populations 1.21774 0.96088 1.01414 1.01656 1.21534 0.95568 0.97099 1.02179 1.21651 0.95175 0.96703 1.02058 1.21562 0.95013 0.94608 1.03473 1.21299 0.92709 0.98634 0.99807 0.90198 1.21361 1.00632 0.98949 0.93435 1.22007 1.04315 0.99342 0.96516 1.20504 0.89720 0.80449 0.80492 1.90549 1.65165 1.41116 1.43509 1.43074 1.06772 1.49112 1.30034 1.17320 0.80448 0.98225 1.14541 1.21081 0.93857 0.97630 0.99477 1.21411 0.93037 1.00873 1.03903 1.17697 0.93124 0.91244 0.88498 1.19563 0.91254 0.95999 1.41255 0.90468 1.25986 1.01134 0.94557 0.92830 1.69839 1.38030 0.99273 1.33446 0.86357 0.81365 0.78522 0.80447 1.18758 1.20278 1.18966 1.20434 0.92463 1.01594 1.09676 1.19961 0.95123 0.94947 1.02807 0.92847 0.92864 0.92954 0.92048 0.91969 0.91650 0.92145 0.91927 0.90141 0.91351 0.91950 0.89976 0.92622 0.93501 0.77398 0.85667 0.84966 0.90714 0.88893 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.12 -1.05 4.97 -26.73 -0.13 -1.18 16 4 C -0.11 -1.25 4.11 -26.73 -0.11 -1.36 16 5 C -0.10 -1.26 2.56 -91.77 -0.24 -1.50 16 6 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 7 C -0.11 -1.22 5.29 -26.73 -0.14 -1.36 16 8 C -0.16 -2.10 9.02 37.16 0.34 -1.76 16 9 C 0.50 8.70 6.44 -10.99 -0.07 8.63 16 10 O -0.53 -11.10 11.25 5.56 0.06 -11.04 16 11 N -0.65 -11.65 5.33 -9.74 -0.05 -11.70 16 12 C -0.01 -0.29 6.47 -83.57 -0.54 -0.83 16 13 C -0.10 -2.58 8.76 -39.79 -0.35 -2.93 16 14 C -0.17 -4.74 8.76 -39.26 -0.34 -5.08 16 15 C 0.10 2.66 5.67 -106.80 -0.61 2.05 16 16 C -0.45 -12.15 9.05 -37.85 -0.34 -12.49 16 17 H 0.08 1.98 7.93 -52.49 -0.42 1.56 16 18 C 0.07 1.87 5.16 -17.34 -0.09 1.78 16 19 N -0.78 -20.44 10.56 55.55 0.59 -19.85 16 20 Si 0.91 18.81 29.61 -169.99 -5.03 13.78 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 C -0.22 -5.50 9.74 -39.26 -0.38 -5.88 16 25 C -0.11 -2.43 9.87 -39.79 -0.39 -2.82 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.55 6.71 -51.93 -0.35 0.21 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.03 6.09 -51.93 -0.32 0.71 16 35 H 0.07 0.63 6.89 -51.93 -0.36 0.27 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.34 5.77 -51.93 -0.30 1.04 16 38 H 0.05 0.65 6.50 -51.93 -0.34 0.31 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.39 5.58 8.64 -40.82 -0.35 5.22 16 41 H 0.13 3.24 5.39 -52.48 -0.28 2.96 16 42 H 0.13 3.77 5.55 -52.49 -0.29 3.47 16 43 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 44 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 45 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -29.52 354.88 -9.48 -39.00 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.20 Total: 11.15 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -3.19 Total: -26.68 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.53 Total: -31.55 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.06 Total: -11.04 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.52 -9.48 -39.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055351756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.809 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds