Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 C 1.53002 * 109.47409 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47409 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46523 * 305.00293 * 5 4 3 7 7 C 1.53004 * 109.47055 * 64.99947 * 5 4 3 8 8 C 1.53002 * 109.46773 * 53.57200 * 7 5 4 9 9 C 1.50697 * 109.46976 * 185.00114 * 5 4 3 10 10 O 1.21272 * 120.00118 * 308.70393 * 9 5 4 11 11 N 1.34778 * 119.99879 * 128.70245 * 9 5 4 12 12 C 1.39233 * 120.00222 * 172.12662 * 11 9 5 13 13 C 1.39481 * 119.83331 * 25.88406 * 12 11 9 14 14 C 1.36377 * 120.17019 * 179.71719 * 13 12 11 15 15 C 1.40866 * 119.82526 * 0.57330 * 14 13 12 16 16 C 1.41153 * 120.16244 * 179.67924 * 15 14 13 17 17 H 1.08001 * 119.99687 * 194.24721 * 16 15 14 18 18 C 1.39907 * 119.99780 * 14.24658 * 16 15 14 19 19 N 1.30867 * 120.00384 * 21.91572 * 18 16 15 20 20 Si 1.86799 * 119.99715 * 201.91677 * 18 16 15 21 21 H 1.48499 * 109.47395 * 59.99934 * 20 18 16 22 22 H 1.48497 * 109.47216 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47352 * 300.00058 * 20 18 16 24 24 C 1.40870 * 119.67382 * 359.69795 * 15 14 13 25 25 C 1.36378 * 119.82669 * 0.02562 * 24 15 14 26 26 H 1.09003 * 109.47248 * 299.99945 * 1 2 3 27 27 H 1.08999 * 109.46958 * 59.99861 * 1 2 3 28 28 H 1.08997 * 109.47493 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47108 * 239.99401 * 2 1 3 30 30 H 1.09005 * 109.46996 * 119.99719 * 2 1 3 31 31 H 1.09003 * 109.46937 * 59.99864 * 3 2 1 32 32 H 1.08999 * 109.47240 * 299.99966 * 3 2 1 33 33 H 1.08998 * 109.46445 * 59.99614 * 4 3 2 34 34 H 1.08999 * 109.47181 * 300.00356 * 4 3 2 35 35 H 1.08995 * 109.46989 * 293.57043 * 7 5 4 36 36 H 1.08995 * 109.46783 * 173.56818 * 7 5 4 37 37 H 1.08996 * 109.47228 * 55.42730 * 8 7 5 38 38 H 1.08996 * 109.47316 * 295.42808 * 8 7 5 39 39 H 1.09002 * 109.46742 * 175.42664 * 8 7 5 40 40 H 0.97007 * 119.99854 * 352.13218 * 11 9 5 41 41 H 1.08004 * 119.91344 * 359.97438 * 13 12 11 42 42 H 1.07995 * 120.08242 * 180.25022 * 14 13 12 43 43 H 0.96998 * 120.00274 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.08362 * 179.97438 * 24 15 14 45 45 H 1.08000 * 119.90846 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0013 6 1 3.6457 3.4242 -0.8406 7 6 3.6748 3.5686 1.3087 8 6 4.1481 2.7244 2.4937 9 6 5.5820 2.8867 -0.1219 10 8 6.2526 2.2070 0.6257 11 7 6.1800 3.6438 -1.0631 12 6 7.5661 3.7749 -1.0738 13 6 8.3624 2.7715 -0.5219 14 6 9.7209 2.8903 -0.5339 15 6 10.3192 4.0356 -1.0948 16 6 11.7244 4.1689 -1.1049 17 1 12.1743 5.1274 -1.3177 18 6 12.5342 3.0594 -0.8392 19 7 12.0618 1.8501 -1.0033 20 14 14.2899 3.3043 -0.2503 21 1 14.2823 4.0576 1.0295 22 1 14.9311 1.9813 -0.0414 23 1 15.0520 4.0688 -1.2700 24 6 9.5082 5.0474 -1.6453 25 6 8.1512 4.9118 -1.6310 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9336 0.9285 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 2.5901 3.6697 1.3448 36 1 4.1336 4.5560 1.3597 37 1 5.2219 2.5552 2.4133 38 1 3.6280 1.7666 2.4882 39 1 3.9317 3.2501 3.4237 40 1 5.6447 4.0974 -1.7329 41 1 7.9019 1.8964 -0.0876 42 1 10.3362 2.1106 -0.1097 43 1 12.6234 1.0809 -0.8194 44 1 9.9598 5.9284 -2.0767 45 1 7.5282 5.6865 -2.0530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055351756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = -59.993903 kcal Electronic energy + Delta-G solvation = -22672.638884 eV Core-core repulsion = 19460.025965 eV Total energy + Delta-G solvation = -3212.612918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46358 -39.31693 -37.57520 -36.18017 -34.85871 -34.67627 -31.41089 -31.07912 -30.72192 -28.29754 -26.54329 -24.50996 -23.60638 -23.15516 -22.26980 -21.41156 -20.28594 -19.27464 -18.15226 -17.84174 -16.97656 -16.77072 -16.38219 -15.83656 -15.47131 -15.27608 -14.81122 -14.62904 -14.26766 -14.13984 -14.10048 -13.89424 -13.56686 -13.39428 -13.18218 -13.10972 -12.87219 -12.75817 -12.43740 -12.36735 -12.27518 -11.94071 -11.84410 -11.73864 -11.65131 -11.51206 -11.38485 -11.25889 -11.13253 -10.73661 -10.05412 -9.41591 -8.89157 -8.59961 -6.23559 0.85438 1.17029 1.35862 1.46334 1.50712 1.87830 2.18252 2.43029 2.72818 3.71515 3.78422 3.79436 3.96917 4.19395 4.22376 4.30449 4.42609 4.45799 4.53412 4.59184 4.64437 4.72836 4.87347 4.88863 4.92669 5.04563 5.07229 5.10027 5.11245 5.14025 5.23912 5.26008 5.29490 5.33131 5.38879 5.47290 5.49174 5.53670 5.62653 5.72333 5.90134 6.12250 6.18083 6.35496 6.71897 6.84156 6.93036 7.04683 7.49819 8.26730 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029130 B = 0.003005 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.961570 B = 9315.382944 C = 9576.805702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.109 4.109 4 C -0.106 4.106 5 C -0.091 4.091 6 H 0.116 0.884 7 C -0.103 4.103 8 C -0.164 4.164 9 C 0.495 3.505 10 O -0.567 6.567 11 N -0.644 5.644 12 C 0.000 4.000 13 C -0.118 4.118 14 C -0.201 4.201 15 C 0.063 3.937 16 C -0.489 4.489 17 H 0.081 0.919 18 C 0.029 3.971 19 N -0.816 5.816 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.253 1.253 24 C -0.232 4.232 25 C -0.103 4.103 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.416 0.584 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.288 0.712 44 H 0.108 0.892 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.672 0.799 1.151 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.112 4.112 6 H 0.134 0.866 7 C -0.141 4.141 8 C -0.221 4.221 9 C 0.285 3.715 10 O -0.446 6.446 11 N -0.287 5.287 12 C -0.094 4.094 13 C -0.138 4.138 14 C -0.221 4.221 15 C 0.061 3.939 16 C -0.517 4.517 17 H 0.099 0.901 18 C -0.186 4.186 19 N -0.441 5.441 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.177 1.177 24 C -0.252 4.252 25 C -0.123 4.123 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.253 0.747 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.186 0.083 1.678 19.259 hybrid contribution 1.085 -0.054 -0.121 1.093 sum -18.101 0.029 1.556 18.168 Atomic orbital electron populations 1.21752 0.94868 1.01832 1.02234 1.21545 0.96616 0.96887 1.01609 1.21600 0.92624 0.97150 1.03303 1.21537 0.97134 0.93690 1.02040 1.21360 0.88259 0.99795 1.01823 0.86606 1.21417 1.02743 0.98018 0.91893 1.21966 1.01621 1.00460 0.98086 1.21589 0.91983 0.78796 0.79152 1.90548 1.66746 1.42523 1.44799 1.43051 1.04901 1.49638 1.31148 1.17397 0.82725 0.97092 1.12155 1.21135 0.93672 0.98502 1.00492 1.21329 0.93802 1.01274 1.05732 1.18053 0.94150 0.92080 0.89640 1.19843 0.91714 0.96788 1.43370 0.90113 1.26920 1.05662 0.93825 0.92204 1.69909 1.39898 1.00210 1.34117 0.85208 0.75622 0.78830 0.79805 1.18679 1.19213 1.17730 1.20727 0.93597 1.01478 1.09374 1.20332 0.94764 0.95557 1.01676 0.92293 0.92211 0.92733 0.92606 0.92740 0.90571 0.90559 0.93017 0.92156 0.87685 0.92351 0.94162 0.91813 0.92290 0.74737 0.86743 0.87151 0.90086 0.87421 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.13 -1.92 5.93 30.59 0.18 -1.74 16 3 C -0.11 -1.59 4.97 30.59 0.15 -1.43 16 4 C -0.11 -2.25 4.11 30.59 0.13 -2.12 16 5 C -0.09 -1.99 2.56 -11.54 -0.03 -2.02 16 6 H 0.12 1.76 7.94 -2.39 -0.02 1.74 16 7 C -0.10 -2.06 5.29 30.60 0.16 -1.89 16 8 C -0.16 -4.02 9.02 71.98 0.65 -3.37 16 9 C 0.50 16.79 6.44 87.66 0.56 17.35 16 10 O -0.57 -24.69 11.25 -3.01 -0.03 -24.72 16 11 N -0.64 -22.00 5.33 -303.13 -1.62 -23.61 16 12 C 0.00 0.01 6.47 38.56 0.25 0.26 16 13 C -0.12 -6.30 8.76 22.14 0.19 -6.11 16 14 C -0.20 -11.69 8.76 22.48 0.20 -11.50 16 15 C 0.06 3.60 5.67 -21.28 -0.12 3.48 16 16 C -0.49 -27.18 9.05 23.39 0.21 -26.97 16 17 H 0.08 4.25 7.93 -2.91 -0.02 4.22 16 18 C 0.03 1.53 5.16 85.24 0.44 1.97 16 19 N -0.82 -44.66 10.56 21.82 0.23 -44.43 16 20 Si 0.99 39.29 29.61 68.60 2.03 41.32 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 24 C -0.23 -11.50 9.74 22.48 0.22 -11.28 16 25 C -0.10 -4.48 9.87 22.13 0.22 -4.26 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.08 0.97 6.71 -2.39 -0.02 0.95 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.53 6.09 -2.39 -0.01 1.51 16 35 H 0.10 1.41 6.89 -2.39 -0.02 1.39 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.04 1.34 5.77 -2.39 -0.01 1.32 16 38 H 0.06 1.42 6.50 -2.39 -0.02 1.41 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.42 10.36 8.64 -92.70 -0.80 9.56 16 41 H 0.11 6.29 5.39 -2.91 -0.02 6.27 16 42 H 0.11 6.78 5.55 -2.91 -0.02 6.76 16 43 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 44 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 45 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -68.83 354.88 4.92 -63.91 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: 0.18 Total: 38.23 kcal Atomic # 6 Polarization: -54.83 SS G_CDS: 4.13 Total: -50.70 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.39 Total: -68.04 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.03 Total: -24.72 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -68.83 4.92 -63.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055351756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.920 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds