Wall clock time and date at job start Tue Mar 31 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46795 * 2 1 4 4 C 1.53005 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47122 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46688 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00350 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99602 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00240 * 4.74832 * 8 6 5 10 10 C 1.50697 * 109.46906 * 269.99669 * 9 8 6 11 11 H 1.08004 * 120.00315 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00353 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00391 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99694 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.47341 * 89.99663 * 14 12 10 16 16 H 1.48500 * 109.47361 * 209.99962 * 14 12 10 17 17 H 1.48503 * 109.47252 * 329.99932 * 14 12 10 18 18 C 1.39921 * 120.00051 * 184.73635 * 8 6 5 19 19 C 1.38880 * 120.06637 * 67.90141 * 18 8 6 20 20 C 1.38112 * 119.92591 * 180.29734 * 19 18 8 21 21 C 1.38279 * 120.07227 * 359.46855 * 20 19 18 22 22 C 1.50699 * 119.93129 * 180.27773 * 21 20 19 23 23 C 1.38280 * 120.14278 * 0.50982 * 21 20 19 24 24 C 1.38114 * 120.06964 * 359.76678 * 23 21 20 25 25 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47303 * 299.99887 * 1 2 3 27 27 H 1.08999 * 109.47166 * 59.99992 * 1 2 3 28 28 H 1.09001 * 109.46731 * 240.00594 * 2 1 3 29 29 H 1.08999 * 109.47166 * 120.00008 * 2 1 3 30 30 H 1.08998 * 109.47103 * 59.99990 * 3 2 1 31 31 H 1.08999 * 109.47271 * 299.99944 * 3 2 1 32 32 H 1.08993 * 109.46777 * 60.00223 * 4 3 2 33 33 H 1.08999 * 109.46980 * 300.00095 * 4 3 2 34 34 H 1.09006 * 109.46987 * 60.00263 * 5 4 3 35 35 H 1.08999 * 109.47271 * 299.99917 * 5 4 3 36 36 H 1.08998 * 109.47136 * 29.98982 * 9 8 6 37 37 H 1.08997 * 109.47384 * 149.99417 * 9 8 6 38 38 H 0.96997 * 119.99949 * 179.97438 * 13 12 10 39 39 H 1.07999 * 120.03317 * 0.02829 * 19 18 8 40 40 H 1.08000 * 119.95987 * 179.70093 * 20 19 18 41 41 H 1.08997 * 109.47146 * 270.23432 * 22 21 20 42 42 H 1.09004 * 109.47265 * 30.23327 * 22 21 20 43 43 H 1.08997 * 109.47241 * 150.23012 * 22 21 20 44 44 H 1.08000 * 119.96877 * 179.74213 * 23 21 20 45 45 H 1.08001 * 120.04195 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8852 -0.0013 6 6 5.5869 2.8851 -0.0013 7 8 6.1934 1.8348 -0.0013 8 7 6.2607 4.0524 -0.0023 9 6 5.5320 5.3191 0.1016 10 6 5.1803 5.8109 -1.2788 11 1 5.4710 5.2376 -2.1467 12 6 4.4875 6.9928 -1.4339 13 7 4.1811 7.4223 -2.6386 14 14 3.9854 7.9849 0.0672 15 1 5.0625 8.9494 0.4061 16 1 2.7319 8.7254 -0.2255 17 1 3.7626 7.0685 1.2143 18 6 7.6564 4.0545 -0.1024 19 6 8.2701 3.6487 -1.2803 20 6 9.6480 3.6460 -1.3738 21 6 10.4162 4.0572 -0.3000 22 6 11.9193 4.0590 -0.4077 23 6 9.8082 4.4623 0.8740 24 6 8.4308 4.4619 0.9759 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9290 -0.8908 33 1 3.9337 0.9287 0.8891 34 1 3.7169 3.3992 0.8888 35 1 3.7162 3.3987 -0.8913 36 1 4.6186 5.1666 0.6765 37 1 6.1574 6.0581 0.6022 38 1 3.6934 8.2537 -2.7476 39 1 7.6706 3.3314 -2.1207 40 1 10.1260 3.3259 -2.2879 41 1 12.3077 3.0925 -0.0866 42 1 12.2093 4.2415 -1.4425 43 1 12.3282 4.8443 0.2281 44 1 10.4110 4.7789 1.7123 45 1 7.9564 4.7779 1.8933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060851857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:31 Heat of formation + Delta-G solvation = -38.872052 kcal Electronic energy + Delta-G solvation = -22896.770458 eV Core-core repulsion = 19685.073451 eV Total energy + Delta-G solvation = -3211.697006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.96896 -38.28311 -35.86884 -35.20245 -32.84495 -32.08977 -31.26987 -30.57439 -28.12223 -27.37273 -25.61673 -23.01152 -22.49543 -21.99594 -21.06053 -20.59456 -18.62519 -17.11996 -16.77171 -15.99750 -15.75354 -15.16460 -15.04153 -14.39079 -14.22676 -14.01789 -13.65200 -13.48694 -13.08471 -13.05095 -12.96497 -12.90245 -12.46167 -12.15566 -12.04300 -11.70629 -11.61274 -11.47522 -11.31410 -11.08260 -10.83102 -10.81666 -10.69935 -10.65593 -10.56071 -10.33490 -10.25268 -9.68626 -9.21134 -8.75457 -8.53164 -8.48420 -7.61859 -6.24597 -4.26457 1.68607 1.81522 3.15330 3.21899 3.24211 3.25713 3.71808 4.13796 4.23412 4.90193 5.03691 5.05930 5.12749 5.14281 5.16158 5.34998 5.39126 5.44189 5.54540 5.56568 5.70188 5.78394 5.79299 5.85926 5.86996 5.89981 6.03270 6.05425 6.08407 6.12250 6.16730 6.25007 6.36145 6.40649 6.47693 6.55264 6.60277 6.67904 6.69600 6.91651 6.98354 7.14988 7.38990 7.59433 8.01632 8.34054 8.78423 8.88126 9.33858 10.87934 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010016 B = 0.005467 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.735265 B = 5120.873283 C = 7255.736271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.101 4.101 5 C -0.136 4.136 6 C 0.523 3.477 7 O -0.557 6.557 8 N -0.559 5.559 9 C 0.210 3.790 10 C -0.540 4.540 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.889 5.889 14 Si 0.870 3.130 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.264 1.264 18 C 0.169 3.831 19 C -0.098 4.098 20 C -0.112 4.112 21 C -0.104 4.104 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.124 4.124 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.039 0.961 37 H 0.031 0.969 38 H 0.267 0.733 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.119 0.881 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -8.026 6.591 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.139 4.139 5 C -0.176 4.176 6 C 0.313 3.687 7 O -0.436 6.436 8 N -0.286 5.286 9 C 0.090 3.910 10 C -0.578 4.578 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.526 5.526 14 Si 0.696 3.304 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.188 1.188 18 C 0.078 3.922 19 C -0.118 4.118 20 C -0.130 4.130 21 C -0.104 4.104 22 C -0.165 4.165 23 C -0.133 4.133 24 C -0.144 4.144 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.107 -8.404 6.492 11.065 hybrid contribution -0.432 0.984 0.574 1.218 sum 2.675 -7.420 7.067 10.590 Atomic orbital electron populations 1.21783 0.96208 1.01171 1.01813 1.21522 0.95462 0.97271 1.01912 1.21644 0.95535 0.96422 1.02299 1.21342 0.94327 0.95396 1.02879 1.21683 0.91607 0.98822 1.05460 1.20733 0.90467 0.82549 0.74944 1.90627 1.70838 1.31227 1.50948 1.45664 1.03547 1.08191 1.71210 1.19931 0.91852 0.80432 0.98758 1.21305 1.37077 1.07765 0.91662 0.90300 1.24842 0.95088 0.96885 0.95745 1.69882 1.39272 1.22093 1.21365 0.86948 0.78801 0.81051 0.83573 1.19874 1.20760 1.18838 1.17553 0.83467 0.98193 0.92956 1.21237 0.94570 0.99180 0.96778 1.20829 0.93155 1.00730 0.98311 1.19804 0.95713 1.00648 0.94270 1.20716 0.91639 1.01817 1.02280 1.20750 0.93887 1.01307 0.97327 1.21156 0.93723 1.01694 0.97818 0.93138 0.92878 0.92716 0.92078 0.92237 0.92086 0.91646 0.91551 0.91882 0.89428 0.87246 0.94278 0.95129 0.92308 0.86117 0.86245 0.91663 0.91825 0.91906 0.86298 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.39 5.93 -26.73 -0.16 -1.54 16 3 C -0.12 -1.55 5.21 -26.73 -0.14 -1.69 16 4 C -0.10 -1.54 4.50 -26.73 -0.12 -1.66 16 5 C -0.14 -2.39 4.36 -27.88 -0.12 -2.51 16 6 C 0.52 10.83 7.53 -10.99 -0.08 10.75 16 7 O -0.56 -12.58 15.74 5.55 0.09 -12.50 16 8 N -0.56 -11.91 2.51 -114.74 -0.29 -12.20 16 9 C 0.21 4.69 3.95 -5.19 -0.02 4.67 16 10 C -0.54 -14.15 9.71 -34.44 -0.33 -14.49 16 11 H 0.08 2.32 8.06 -52.48 -0.42 1.89 16 12 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 14 Si 0.87 19.66 27.47 -169.99 -4.67 14.99 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 18 C 0.17 3.47 4.75 -83.69 -0.40 3.07 16 19 C -0.10 -1.93 9.55 -39.39 -0.38 -2.31 16 20 C -0.11 -1.84 9.69 -39.61 -0.38 -2.23 16 21 C -0.10 -1.56 5.88 -104.59 -0.62 -2.18 16 22 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 23 C -0.11 -1.76 9.69 -39.61 -0.38 -2.14 16 24 C -0.12 -2.22 9.69 -39.39 -0.38 -2.61 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.06 0.97 8.10 -51.93 -0.42 0.54 16 34 H 0.09 1.42 7.26 -51.93 -0.38 1.04 16 35 H 0.11 2.06 7.91 -51.93 -0.41 1.65 16 36 H 0.04 0.83 5.53 -51.93 -0.29 0.54 16 37 H 0.03 0.68 7.29 -51.93 -0.38 0.30 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 44 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -30.08 370.36 -9.20 -39.28 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.80 Total: 4.51 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -2.88 Total: -14.83 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.49 Total: -37.03 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 14.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.08 -9.20 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060851857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.405 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds