Wall clock time and date at job start Tue Mar 31 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00109 * 269.72529 * 5 4 3 7 7 C 1.38238 * 119.99754 * 179.76611 * 6 5 4 8 8 C 1.38234 * 120.00016 * 0.50732 * 7 6 5 9 9 C 1.50696 * 120.00209 * 179.72225 * 8 7 6 10 10 C 1.50701 * 109.47191 * 270.02548 * 9 8 7 11 11 O 1.21275 * 120.00267 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99886 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00241 * 359.97438 * 12 10 9 14 14 C 1.46497 * 120.00299 * 180.02562 * 12 10 9 15 15 C 1.50699 * 109.47474 * 89.99412 * 14 12 10 16 16 H 1.08002 * 120.00033 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99837 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00294 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99797 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47321 * 59.99700 * 19 17 15 21 21 H 1.48493 * 109.47161 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46892 * 299.99655 * 19 17 15 23 23 C 1.38238 * 120.00063 * 359.74632 * 8 7 6 24 24 C 1.38235 * 120.00108 * 0.02562 * 23 8 7 25 25 H 1.09000 * 109.46955 * 60.00396 * 1 2 3 26 26 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00611 * 1 2 3 28 28 H 1.08997 * 109.47467 * 239.99839 * 2 1 3 29 29 H 1.09000 * 109.46955 * 119.99604 * 2 1 3 30 30 H 1.09000 * 109.47531 * 59.99583 * 3 2 1 31 31 H 1.09008 * 109.47250 * 300.00157 * 3 2 1 32 32 H 1.09000 * 109.46884 * 60.00289 * 4 3 2 33 33 H 1.09000 * 109.46955 * 299.99604 * 4 3 2 34 34 H 1.08004 * 119.99934 * 0.02562 * 6 5 4 35 35 H 1.07999 * 119.99924 * 180.23621 * 7 6 5 36 36 H 1.09003 * 109.47159 * 30.02324 * 9 8 7 37 37 H 1.08997 * 109.47406 * 150.02394 * 9 8 7 38 38 H 1.09004 * 109.46974 * 89.99666 * 13 12 10 39 39 H 1.08997 * 109.47534 * 210.00152 * 13 12 10 40 40 H 1.09003 * 109.46847 * 330.00499 * 13 12 10 41 41 H 1.09000 * 109.47304 * 209.99879 * 14 12 10 42 42 H 1.09005 * 109.46791 * 329.99733 * 14 12 10 43 43 H 0.96995 * 120.00185 * 180.02562 * 18 17 15 44 44 H 1.08000 * 120.00578 * 179.97438 * 23 8 7 45 45 H 1.07999 * 120.00165 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3087 3.5124 -1.1974 7 6 4.7649 4.8173 -1.1979 8 6 4.9947 5.4696 -0.0010 9 6 5.4980 6.8901 -0.0016 10 6 7.0050 6.8891 -0.0010 11 8 7.6107 5.8385 0.0003 12 7 7.6796 8.0559 -0.0018 13 6 6.9479 9.3251 -0.0039 14 6 9.1445 8.0550 -0.0018 15 6 9.6470 8.0535 -1.4225 16 1 8.9452 8.0537 -2.2435 17 6 11.0026 8.0520 -1.6743 18 7 11.8571 8.0523 -0.6747 19 14 11.6254 8.0509 -3.4355 20 1 11.1317 9.2637 -4.1359 21 1 13.1103 8.0499 -3.4354 22 1 11.1292 6.8386 -4.1352 23 6 4.7634 4.8188 1.1964 24 6 4.3027 3.5155 1.1970 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 4.1329 3.0013 -2.1325 35 1 4.9458 5.3257 -2.1334 36 1 5.1354 7.4037 -0.8920 37 1 5.1346 7.4046 0.8879 38 1 6.7656 9.6411 1.0233 39 1 7.5378 10.0838 -0.5181 40 1 5.9958 9.1947 -0.5183 41 1 9.5084 8.9452 0.5114 42 1 9.5073 7.1652 0.5128 43 1 12.8108 8.0516 -0.8518 44 1 4.9433 5.3282 2.1316 45 1 4.1224 3.0069 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070870595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:37 Heat of formation + Delta-G solvation = -39.584026 kcal Electronic energy + Delta-G solvation = -22124.741428 eV Core-core repulsion = 18913.013549 eV Total energy + Delta-G solvation = -3211.727880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.69846 -38.51521 -36.02012 -34.73879 -33.16974 -32.53055 -30.73428 -30.24225 -28.02319 -26.71767 -25.56749 -23.83664 -22.56175 -22.48460 -21.34236 -20.47159 -18.39256 -16.53090 -16.24082 -16.04546 -15.97260 -15.24748 -15.16721 -14.78931 -14.34264 -14.26448 -14.06863 -13.29982 -13.21265 -13.11332 -12.87038 -12.56776 -12.51018 -12.16775 -12.01825 -11.79785 -11.66355 -11.47578 -11.37406 -11.29580 -11.15261 -10.90447 -10.84544 -10.65675 -10.65170 -10.50861 -10.13887 -9.62234 -8.94158 -8.69629 -8.41628 -8.25796 -7.60436 -6.02319 -4.07066 1.51136 1.62907 3.32672 3.37108 3.39315 3.49794 3.80492 4.18154 4.46984 4.56701 4.68120 4.84801 4.93189 4.95761 5.10074 5.15305 5.19348 5.29343 5.37786 5.43657 5.47721 5.50183 5.56365 5.60587 5.63927 5.71205 5.75948 5.77993 5.85251 5.89283 5.95641 6.03613 6.11998 6.21811 6.24792 6.27258 6.59376 6.76102 6.83680 7.07841 7.21284 7.47076 7.57411 7.94145 8.25808 8.45681 8.92568 9.14853 9.57863 11.05712 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.002845 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.886666 B = 9837.744661 C =10397.247842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.079 4.079 5 C -0.090 4.090 6 C -0.116 4.116 7 C -0.102 4.102 8 C -0.057 4.057 9 C -0.105 4.105 10 C 0.505 3.495 11 O -0.533 6.533 12 N -0.606 5.606 13 C 0.083 3.917 14 C 0.246 3.754 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.104 4.104 24 C -0.118 4.118 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.031 0.969 42 H 0.043 0.957 43 H 0.264 0.736 44 H 0.118 0.882 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.670 -8.105 2.646 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.090 4.090 6 C -0.134 4.134 7 C -0.120 4.120 8 C -0.058 4.058 9 C -0.145 4.145 10 C 0.291 3.709 11 O -0.410 6.410 12 N -0.338 5.338 13 C -0.061 4.061 14 C 0.126 3.874 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.122 4.122 24 C -0.136 4.136 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.136 0.864 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.117 -8.646 2.696 22.977 hybrid contribution 0.557 0.231 -1.007 1.174 sum -20.560 -8.414 1.689 22.279 Atomic orbital electron populations 1.21776 0.95993 1.01432 1.01826 1.21559 0.95765 0.97022 1.02012 1.21603 0.94602 0.96485 1.02385 1.20587 0.95347 0.92958 1.02717 1.19776 1.00056 0.95917 0.93278 1.20911 1.00488 0.94737 0.97310 1.20968 0.98630 0.94870 0.97532 1.19359 0.97827 0.95139 0.93444 1.20770 0.94667 0.94807 1.04232 1.20194 0.88592 0.84288 0.77833 1.90691 1.69998 1.30870 1.49396 1.48173 1.09457 1.04467 1.71731 1.21640 0.96553 0.87537 1.00365 1.19269 0.72319 0.98340 0.97438 1.21394 0.91686 1.51049 0.92302 0.92582 1.24945 0.96688 0.95122 0.97426 1.69922 1.02304 1.50436 1.30766 0.86560 0.77562 0.78600 0.84705 1.20261 1.21164 1.20187 1.20931 0.98975 0.94901 0.97381 1.20895 1.00636 0.94758 0.97275 0.92772 0.92914 0.92786 0.92039 0.92051 0.91897 0.91879 0.91206 0.91217 0.86474 0.86317 0.88652 0.88807 0.93793 0.90808 0.92461 0.95065 0.93900 0.92680 0.86420 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.11 -0.95 5.20 -26.73 -0.14 -1.09 16 4 C -0.08 -0.77 5.35 -27.88 -0.15 -0.92 16 5 C -0.09 -1.14 5.13 -104.62 -0.54 -1.68 16 6 C -0.12 -1.57 9.70 -39.58 -0.38 -1.96 16 7 C -0.10 -1.54 9.70 -39.58 -0.38 -1.92 16 8 C -0.06 -0.89 4.37 -104.63 -0.46 -1.35 16 9 C -0.10 -1.59 4.38 -29.04 -0.13 -1.71 16 10 C 0.50 10.71 7.67 -10.99 -0.08 10.62 16 11 O -0.53 -13.88 15.61 5.56 0.09 -13.79 16 12 N -0.61 -13.05 2.86 -182.95 -0.52 -13.57 16 13 C 0.08 1.31 10.24 59.85 0.61 1.93 16 14 C 0.25 6.56 5.16 -5.20 -0.03 6.53 16 15 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 19 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.10 -1.51 9.70 -39.58 -0.38 -1.89 16 24 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 35 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.10 1.25 7.34 -51.93 -0.38 0.87 16 37 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 41 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -34.14 374.67 -9.54 -43.69 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.82 Total: -1.95 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.65 Total: -10.89 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.21 Total: -39.84 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.14 -9.54 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070870595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.105 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds