Wall clock time and date at job start Tue Mar 31 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00109 * 269.72529 * 5 4 3 7 7 C 1.38238 * 119.99754 * 179.76611 * 6 5 4 8 8 C 1.38234 * 120.00016 * 0.50732 * 7 6 5 9 9 C 1.50696 * 120.00209 * 179.72225 * 8 7 6 10 10 C 1.50701 * 109.47191 * 270.02548 * 9 8 7 11 11 O 1.21275 * 120.00267 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99886 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00241 * 359.97438 * 12 10 9 14 14 C 1.46497 * 120.00299 * 180.02562 * 12 10 9 15 15 C 1.50699 * 109.47474 * 89.99412 * 14 12 10 16 16 H 1.08002 * 120.00033 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99837 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00294 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99797 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47321 * 59.99700 * 19 17 15 21 21 H 1.48493 * 109.47161 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46892 * 299.99655 * 19 17 15 23 23 C 1.38238 * 120.00063 * 359.74632 * 8 7 6 24 24 C 1.38235 * 120.00108 * 0.02562 * 23 8 7 25 25 H 1.09000 * 109.46955 * 60.00396 * 1 2 3 26 26 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00611 * 1 2 3 28 28 H 1.08997 * 109.47467 * 239.99839 * 2 1 3 29 29 H 1.09000 * 109.46955 * 119.99604 * 2 1 3 30 30 H 1.09000 * 109.47531 * 59.99583 * 3 2 1 31 31 H 1.09008 * 109.47250 * 300.00157 * 3 2 1 32 32 H 1.09000 * 109.46884 * 60.00289 * 4 3 2 33 33 H 1.09000 * 109.46955 * 299.99604 * 4 3 2 34 34 H 1.08004 * 119.99934 * 0.02562 * 6 5 4 35 35 H 1.07999 * 119.99924 * 180.23621 * 7 6 5 36 36 H 1.09003 * 109.47159 * 30.02324 * 9 8 7 37 37 H 1.08997 * 109.47406 * 150.02394 * 9 8 7 38 38 H 1.09004 * 109.46974 * 89.99666 * 13 12 10 39 39 H 1.08997 * 109.47534 * 210.00152 * 13 12 10 40 40 H 1.09003 * 109.46847 * 330.00499 * 13 12 10 41 41 H 1.09000 * 109.47304 * 209.99879 * 14 12 10 42 42 H 1.09005 * 109.46791 * 329.99733 * 14 12 10 43 43 H 0.96995 * 120.00185 * 180.02562 * 18 17 15 44 44 H 1.08000 * 120.00578 * 179.97438 * 23 8 7 45 45 H 1.07999 * 120.00165 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3087 3.5124 -1.1974 7 6 4.7649 4.8173 -1.1979 8 6 4.9947 5.4696 -0.0010 9 6 5.4980 6.8901 -0.0016 10 6 7.0050 6.8891 -0.0010 11 8 7.6107 5.8385 0.0003 12 7 7.6796 8.0559 -0.0018 13 6 6.9479 9.3251 -0.0039 14 6 9.1445 8.0550 -0.0018 15 6 9.6470 8.0535 -1.4225 16 1 8.9452 8.0537 -2.2435 17 6 11.0026 8.0520 -1.6743 18 7 11.8571 8.0523 -0.6747 19 14 11.6254 8.0509 -3.4355 20 1 11.1317 9.2637 -4.1359 21 1 13.1103 8.0499 -3.4354 22 1 11.1292 6.8386 -4.1352 23 6 4.7634 4.8188 1.1964 24 6 4.3027 3.5155 1.1970 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 4.1329 3.0013 -2.1325 35 1 4.9458 5.3257 -2.1334 36 1 5.1354 7.4037 -0.8920 37 1 5.1346 7.4046 0.8879 38 1 6.7656 9.6411 1.0233 39 1 7.5378 10.0838 -0.5181 40 1 5.9958 9.1947 -0.5183 41 1 9.5084 8.9452 0.5114 42 1 9.5073 7.1652 0.5128 43 1 12.8108 8.0516 -0.8518 44 1 4.9433 5.3282 2.1316 45 1 4.1224 3.0069 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070870595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:37 Heat of formation + Delta-G solvation = -57.983841 kcal Electronic energy + Delta-G solvation = -22125.539304 eV Core-core repulsion = 18913.013549 eV Total energy + Delta-G solvation = -3212.525756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.00459 -39.89178 -36.85098 -36.45968 -34.78024 -34.02935 -31.77783 -31.31814 -29.73133 -27.87030 -27.13059 -25.13570 -23.99934 -23.61101 -22.01910 -21.49487 -19.98601 -18.70040 -17.81588 -17.34996 -16.91638 -16.75935 -16.28217 -16.13269 -15.74301 -15.56839 -14.90785 -14.45108 -14.35103 -14.25880 -14.09718 -13.84620 -13.69341 -13.50336 -13.41875 -13.17508 -12.96625 -12.86339 -12.72398 -12.54773 -12.28207 -12.19152 -12.14542 -11.95548 -11.76509 -11.71682 -11.46147 -11.36733 -10.65509 -10.63847 -9.75927 -9.40562 -9.34792 -8.23186 -6.38328 0.43775 0.56385 1.34927 1.39557 1.46866 1.87367 2.32218 2.46412 2.93318 3.05876 3.72686 3.86629 3.89958 4.03011 4.10966 4.15688 4.23826 4.32337 4.38998 4.44812 4.55983 4.59818 4.65975 4.73881 4.80398 4.81386 4.85732 4.97432 4.99496 4.99560 5.01829 5.16331 5.20993 5.23148 5.25886 5.33393 5.41107 5.52441 5.54230 5.55948 5.73900 5.76405 5.84820 6.05594 6.17602 6.69213 6.81065 7.27706 7.51750 8.83602 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.002845 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.886666 B = 9837.744661 C =10397.247842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.076 4.076 5 C -0.091 4.091 6 C -0.127 4.127 7 C -0.121 4.121 8 C -0.082 4.082 9 C -0.088 4.088 10 C 0.496 3.504 11 O -0.593 6.593 12 N -0.613 5.613 13 C 0.077 3.923 14 C 0.259 3.741 15 C -0.542 4.542 16 H 0.053 0.947 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.968 3.032 20 H -0.258 1.258 21 H -0.278 1.278 22 H -0.279 1.279 23 C -0.118 4.118 24 C -0.126 4.126 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.023 0.977 42 H -0.006 1.006 43 H 0.267 0.733 44 H 0.127 0.873 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.650 -8.062 1.858 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.114 4.114 5 C -0.091 4.091 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.083 4.083 9 C -0.127 4.127 10 C 0.285 3.715 11 O -0.474 6.474 12 N -0.345 5.345 13 C -0.065 4.065 14 C 0.138 3.862 15 C -0.581 4.581 16 H 0.071 0.929 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.792 3.208 20 H -0.183 1.183 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.136 4.136 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.041 0.959 42 H 0.013 0.987 43 H 0.076 0.924 44 H 0.145 0.855 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.145 -8.556 1.914 24.750 hybrid contribution 1.149 0.178 -0.702 1.358 sum -21.997 -8.378 1.212 23.569 Atomic orbital electron populations 1.21778 0.95476 1.01941 1.01855 1.21543 0.96209 0.96112 1.02319 1.21539 0.93407 0.97335 1.02162 1.20629 0.96298 0.91155 1.03285 1.20141 0.98921 0.97148 0.92863 1.21195 1.00295 0.94473 0.98538 1.21180 0.99290 0.95769 0.97640 1.19521 0.99035 0.95672 0.94033 1.20728 0.89312 0.95662 1.06981 1.21290 0.91124 0.83038 0.76033 1.90651 1.71810 1.32983 1.51991 1.48216 1.07690 1.07062 1.71524 1.21962 0.97286 0.84574 1.02683 1.18730 0.76040 0.95505 0.95975 1.21673 0.92162 1.51200 0.93036 0.92880 1.25901 0.96924 0.94481 1.02104 1.70047 1.02693 1.51015 1.33123 0.85461 0.77238 0.79004 0.79072 1.18280 1.20274 1.20414 1.21190 0.99123 0.95688 0.97565 1.21219 1.00156 0.94520 0.98477 0.92813 0.92197 0.92719 0.91819 0.91686 0.92023 0.92211 0.90773 0.90529 0.84806 0.86170 0.86063 0.85481 0.91025 0.91669 0.88537 0.95882 0.98742 0.92399 0.85497 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.55 5.93 30.59 0.18 -1.36 16 3 C -0.11 -1.60 5.20 30.59 0.16 -1.44 16 4 C -0.08 -1.37 5.35 29.85 0.16 -1.21 16 5 C -0.09 -2.19 5.13 -19.86 -0.10 -2.29 16 6 C -0.13 -3.33 9.70 22.27 0.22 -3.12 16 7 C -0.12 -3.58 9.70 22.27 0.22 -3.36 16 8 C -0.08 -2.49 4.37 -19.87 -0.09 -2.58 16 9 C -0.09 -2.49 4.38 29.10 0.13 -2.36 16 10 C 0.50 21.11 7.67 87.66 0.67 21.78 16 11 O -0.59 -32.08 15.61 -3.01 -0.05 -32.13 16 12 N -0.61 -26.48 2.86 -851.12 -2.43 -28.91 16 13 C 0.08 2.26 10.24 127.77 1.31 3.57 16 14 C 0.26 14.37 5.16 85.63 0.44 14.81 16 15 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 16 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 17 C 0.00 0.28 5.46 84.65 0.46 0.74 16 18 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 19 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 C -0.12 -3.32 9.70 22.27 0.22 -3.11 16 24 C -0.13 -3.17 9.70 22.27 0.22 -2.95 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 33 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 34 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.12 2.81 7.34 -2.39 -0.02 2.79 16 37 H 0.13 2.75 8.05 -2.39 -0.02 2.73 16 38 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 40 H 0.10 2.08 6.44 -2.39 -0.02 2.07 16 41 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 42 H -0.01 -0.36 7.42 -2.38 -0.02 -0.38 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 45 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -77.24 374.67 5.91 -71.33 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.93 Total: 14.68 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 5.14 Total: -15.60 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -2.15 Total: -85.97 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.05 Total: -32.13 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -77.24 5.91 -71.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070870595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.347 kcal (2) G-P(sol) polarization free energy of solvation -77.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds