Wall clock time and date at job start Tue Mar 31 2020 06:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46753 * 2 1 4 4 C 1.53002 * 109.47064 * 240.00499 * 2 1 3 5 5 C 1.50694 * 109.47200 * 120.00520 * 2 1 3 6 6 C 1.38360 * 119.85722 * 60.00297 * 5 2 1 7 7 C 1.37957 * 120.14382 * 180.25691 * 6 5 2 8 8 C 1.39576 * 119.85528 * 359.51406 * 7 6 5 9 9 C 1.47845 * 120.14298 * 180.21013 * 8 7 6 10 10 O 1.21557 * 119.99523 * 180.29012 * 9 8 7 11 11 N 1.34771 * 120.00437 * 0.29770 * 9 8 7 12 12 C 1.46493 * 120.00235 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47247 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47067 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47145 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99817 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00357 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00065 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99769 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47463 * 90.00058 * 19 17 15 21 21 H 1.48501 * 109.46886 * 210.00173 * 19 17 15 22 22 H 1.48501 * 109.47275 * 329.99853 * 19 17 15 23 23 C 1.39579 * 119.70688 * 0.50129 * 8 7 6 24 24 C 1.37955 * 119.85778 * 359.73229 * 23 8 7 25 25 H 1.08992 * 109.47077 * 299.99285 * 1 2 3 26 26 H 1.08999 * 109.46905 * 59.99753 * 1 2 3 27 27 H 1.09000 * 109.46800 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46702 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47617 * 300.00369 * 3 2 1 30 30 H 1.09005 * 109.46855 * 60.00591 * 3 2 1 31 31 H 1.09000 * 109.47340 * 299.99704 * 4 2 1 32 32 H 1.09000 * 109.47010 * 59.99812 * 4 2 1 33 33 H 1.09003 * 109.46945 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.92305 * 359.97238 * 6 5 2 35 35 H 1.08004 * 120.06851 * 179.74094 * 7 6 5 36 36 H 0.97006 * 119.99552 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47295 * 300.00129 * 12 11 9 38 38 H 1.09003 * 109.46891 * 60.00262 * 12 11 9 39 39 H 1.09001 * 109.46384 * 300.00034 * 13 12 11 40 40 H 1.08995 * 109.46959 * 60.00114 * 13 12 11 41 41 H 1.08998 * 109.47229 * 300.00162 * 14 13 12 42 42 H 1.09009 * 109.47303 * 59.99987 * 14 13 12 43 43 H 0.97001 * 119.99687 * 180.02562 * 18 17 15 44 44 H 1.08003 * 120.06670 * 179.70533 * 23 8 7 45 45 H 1.07997 * 119.92668 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.6964 -2.0352 1.4462 7 6 2.1486 -2.6898 2.5732 8 6 2.9552 -2.0159 3.4916 9 6 3.4472 -2.7126 4.6992 10 8 4.1451 -2.1215 5.4999 11 7 3.1221 -4.0031 4.9122 12 6 3.6101 -4.6936 6.1084 13 6 3.1002 -6.1362 6.1083 14 6 3.6094 -6.8572 7.3580 15 6 3.1067 -8.2778 7.3583 16 1 2.4857 -8.6310 6.5482 17 6 3.4385 -9.1264 8.3930 18 7 3.0002 -10.3664 8.3929 19 14 4.5108 -8.5149 9.7951 20 1 3.6510 -7.9485 10.8651 21 1 5.3021 -9.6459 10.3426 22 1 5.4317 -7.4642 9.2920 23 6 3.2901 -0.6794 3.2679 24 6 2.8273 -0.0350 2.1394 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6768 -1.7488 -1.2494 32 1 1.6767 -0.2072 -2.1392 33 1 3.1301 -0.7207 -1.2495 34 1 1.0749 -2.5565 0.7331 35 1 1.8822 -3.7227 2.7426 36 1 2.5649 -4.4747 4.2732 37 1 4.7001 -4.6931 6.1090 38 1 3.2460 -4.1800 6.9983 39 1 2.0102 -6.1362 6.1080 40 1 3.4639 -6.6500 5.2185 41 1 4.6994 -6.8570 7.3588 42 1 3.2454 -6.3432 8.2477 43 1 3.2334 -10.9633 9.1211 44 1 3.9099 -0.1509 3.9772 45 1 3.0854 0.9992 1.9654 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:55 Heat of formation + Delta-G solvation = -61.920387 kcal Electronic energy + Delta-G solvation = -21860.533890 eV Core-core repulsion = 18647.837433 eV Total energy + Delta-G solvation = -3212.696457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40077 -40.12620 -37.20760 -36.92559 -35.20789 -33.44621 -32.09401 -31.29327 -28.91418 -28.18913 -28.06536 -25.52831 -24.14168 -23.15641 -22.28463 -21.57579 -20.09144 -19.20445 -18.72416 -17.29973 -16.76498 -16.64665 -16.28955 -15.84711 -15.73924 -15.52511 -15.09699 -14.93853 -14.78559 -14.58249 -14.29225 -13.86079 -13.78209 -13.60108 -13.51523 -12.90350 -12.76936 -12.74569 -12.71075 -12.50433 -12.35561 -11.96652 -11.81843 -11.80142 -11.68996 -11.61559 -11.38996 -11.34457 -11.01002 -10.76746 -10.23267 -9.96107 -9.68229 -8.29958 -6.33748 -0.17059 0.40726 1.36384 1.38024 1.49809 1.80451 2.12657 2.35780 2.85340 3.05689 3.53620 3.73966 3.78610 3.97716 4.06573 4.13148 4.13778 4.17370 4.36045 4.41673 4.46717 4.51485 4.81620 4.82431 4.82706 4.85973 4.86681 4.94105 5.00854 5.02557 5.06727 5.07343 5.11022 5.24934 5.30768 5.34769 5.38466 5.46730 5.46853 5.49186 5.53962 5.64212 5.65387 5.92224 6.26645 6.48872 6.74080 7.13383 7.30981 8.86318 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.002395 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.736651 B =11688.089661 C =12271.854543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.043 4.043 6 C -0.124 4.124 7 C -0.082 4.082 8 C -0.158 4.158 9 C 0.550 3.450 10 O -0.587 6.587 11 N -0.712 5.712 12 C 0.126 3.874 13 C -0.100 4.100 14 C -0.012 4.012 15 C -0.530 4.530 16 H 0.039 0.961 17 C 0.004 3.996 18 N -0.949 5.949 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.249 1.249 23 C -0.072 4.072 24 C -0.131 4.131 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.413 0.587 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.266 0.734 44 H 0.123 0.877 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.290 24.808 -21.351 33.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.204 4.204 4 C -0.196 4.196 5 C -0.043 4.043 6 C -0.141 4.141 7 C -0.100 4.100 8 C -0.161 4.161 9 C 0.340 3.660 10 O -0.469 6.469 11 N -0.363 5.363 12 C 0.002 3.998 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.568 4.568 16 H 0.057 0.943 17 C -0.193 4.193 18 N -0.590 5.590 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.172 1.172 23 C -0.091 4.091 24 C -0.149 4.149 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.251 0.749 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.141 0.859 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.800 25.031 -20.681 32.691 hybrid contribution 0.245 -0.720 0.857 1.146 sum -3.555 24.311 -19.825 31.570 Atomic orbital electron populations 1.21905 0.92726 1.02594 1.02385 1.19635 0.96368 0.95469 0.91778 1.22003 1.01340 0.94384 1.02699 1.21906 1.01001 1.00574 0.96131 1.20381 0.94470 0.93932 0.95565 1.21205 1.00859 0.94560 0.97514 1.21524 0.94819 1.00423 0.93281 1.19874 1.04135 0.96024 0.96039 1.18801 0.79508 0.81764 0.85973 1.90728 1.40366 1.67209 1.48551 1.45912 1.53175 1.11533 1.25693 1.21359 0.98849 0.92473 0.87120 1.21488 1.00880 0.92148 0.99287 1.19470 0.96575 0.93912 0.95093 1.21451 1.31463 0.96373 1.07514 0.94315 1.25983 0.97300 0.94835 1.01154 1.70057 1.47676 1.07062 1.34208 0.85702 0.79572 0.78502 0.79165 1.19250 1.20985 1.17220 1.21336 0.97377 0.92998 0.97383 1.21366 0.98635 1.01394 0.93484 0.92983 0.90976 0.91987 0.92172 0.91103 0.92175 0.91984 0.90979 0.92986 0.83180 0.83859 0.74919 0.92295 0.92232 0.91558 0.91573 0.96080 0.96191 0.92503 0.85877 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.29 71.98 0.60 -0.61 16 2 C -0.03 -0.32 0.85 -52.93 -0.05 -0.37 16 3 C -0.15 -1.24 7.13 71.98 0.51 -0.72 16 4 C -0.14 -1.20 8.29 71.98 0.60 -0.61 16 5 C -0.04 -0.62 4.77 -19.81 -0.09 -0.72 16 6 C -0.12 -1.81 8.69 22.23 0.19 -1.61 16 7 C -0.08 -1.48 9.54 22.53 0.21 -1.27 16 8 C -0.16 -3.81 5.87 -20.09 -0.12 -3.93 16 9 C 0.55 16.89 7.77 86.79 0.67 17.56 16 10 O -0.59 -22.64 16.35 -3.89 -0.06 -22.70 16 11 N -0.71 -19.82 5.51 -465.98 -2.57 -22.39 16 12 C 0.13 4.14 5.67 86.38 0.49 4.63 16 13 C -0.10 -3.65 5.27 30.60 0.16 -3.49 16 14 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 15 C -0.53 -30.17 9.66 25.60 0.25 -29.92 16 16 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 17 C 0.00 0.25 5.47 84.65 0.46 0.71 16 18 N -0.95 -59.40 13.96 21.45 0.30 -59.11 16 19 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 23 C -0.07 -1.62 9.60 22.53 0.22 -1.40 16 24 C -0.13 -2.19 8.96 22.23 0.20 -2.00 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.51 7.38 -2.39 -0.02 0.49 16 28 H 0.06 0.52 7.51 -2.39 -0.02 0.50 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.52 7.50 -2.38 -0.02 0.50 16 31 H 0.06 0.51 7.38 -2.39 -0.02 0.49 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.15 1.48 7.08 -2.91 -0.02 1.46 16 35 H 0.14 2.02 6.41 -2.91 -0.02 2.00 16 36 H 0.41 8.96 6.51 -92.70 -0.60 8.36 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 42 H 0.02 0.90 7.57 -2.38 -0.02 0.88 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.12 2.97 7.65 -2.91 -0.02 2.94 16 45 H 0.15 1.88 5.87 -2.91 -0.02 1.86 16 Total: -1.00 -71.78 361.52 4.29 -67.49 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.31 Total: 14.36 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.43 Total: -24.19 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -2.27 Total: -81.49 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.06 Total: -22.70 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -71.78 4.29 -67.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.572 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds