Wall clock time and date at job start Tue Mar 31 2020 06:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 C 1.53004 * 109.47039 * 185.38670 * 3 2 1 5 5 C 1.52999 * 109.47090 * 173.50581 * 4 3 2 6 6 C 1.50701 * 109.46851 * 305.37976 * 3 2 1 7 7 O 1.21284 * 119.99955 * 120.00315 * 6 3 2 8 8 N 1.34777 * 120.00352 * 300.00323 * 6 3 2 9 9 C 1.46502 * 120.00060 * 180.02562 * 8 6 3 10 10 H 1.09003 * 109.46684 * 324.99585 * 9 8 6 11 11 C 1.52993 * 109.47176 * 85.00134 * 9 8 6 12 12 C 1.50703 * 109.46816 * 205.00182 * 9 8 6 13 13 H 1.08002 * 119.99945 * 359.97438 * 12 9 8 14 14 C 1.37873 * 119.99906 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00125 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 119.99901 * 359.97438 * 14 12 9 17 17 H 1.48503 * 109.47045 * 90.00194 * 16 14 12 18 18 H 1.48500 * 109.47060 * 209.99979 * 16 14 12 19 19 H 1.48500 * 109.47064 * 330.00274 * 16 14 12 20 20 C 1.50692 * 109.47254 * 65.38309 * 3 2 1 21 21 C 1.38241 * 120.00219 * 108.18176 * 20 3 2 22 22 C 1.38226 * 120.00077 * 179.76879 * 21 20 3 23 23 C 1.38241 * 120.00170 * 0.47585 * 22 21 20 24 24 C 1.38236 * 119.99644 * 359.79438 * 23 22 21 25 25 C 1.38230 * 120.00304 * 288.44653 * 20 3 2 26 26 H 1.09004 * 109.47096 * 292.92054 * 1 2 3 27 27 H 1.09006 * 109.46810 * 52.91995 * 1 2 3 28 28 H 1.08997 * 109.47523 * 172.91904 * 1 2 3 29 29 H 1.08997 * 109.47509 * 239.99408 * 2 1 3 30 30 H 1.09006 * 109.47235 * 119.99580 * 2 1 3 31 31 H 1.09005 * 109.46636 * 293.49807 * 4 3 2 32 32 H 1.09000 * 109.47457 * 53.49470 * 4 3 2 33 33 H 1.08994 * 109.47355 * 63.99459 * 5 4 3 34 34 H 1.09005 * 109.46811 * 183.99853 * 5 4 3 35 35 H 1.09002 * 109.46544 * 303.99254 * 5 4 3 36 36 H 0.97001 * 119.99496 * 359.97438 * 8 6 3 37 37 H 1.08997 * 109.47331 * 59.99560 * 11 9 8 38 38 H 1.09002 * 109.47054 * 180.02562 * 11 9 8 39 39 H 1.09006 * 109.46811 * 299.99575 * 11 9 8 40 40 H 0.96997 * 120.00150 * 180.02562 * 15 14 12 41 41 H 1.08001 * 119.99624 * 359.97438 * 21 20 3 42 42 H 1.08001 * 119.99984 * 180.24952 * 22 21 20 43 43 H 1.08001 * 119.99774 * 179.77603 * 23 22 21 44 44 H 1.08006 * 119.99496 * 179.97438 * 24 23 22 45 45 H 1.08009 * 119.99784 * 0.02562 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4446 -0.1354 5 6 4.0596 2.8829 -0.2981 6 6 1.4318 2.1903 -1.1585 7 8 0.7485 3.1715 -0.9552 8 7 1.6472 1.7687 -2.4204 9 6 1.0564 2.4960 -3.5465 10 1 0.0784 2.8810 -3.2574 11 6 1.9684 3.6610 -3.9361 12 6 0.9022 1.5642 -4.7209 13 1 1.2136 0.5335 -4.6368 14 6 0.3637 2.0275 -5.9025 15 7 0.2296 1.2145 -6.9275 16 14 -0.1756 3.8101 -6.0475 17 1 0.9615 4.6334 -6.5318 18 1 -1.3033 3.9095 -7.0086 19 1 -0.6136 4.3045 -4.7175 20 6 1.6495 2.1134 1.2916 21 6 2.6115 2.3912 2.2447 22 6 2.2541 3.0109 3.4274 23 6 0.9330 3.3440 3.6614 24 6 -0.0299 3.0611 2.7108 25 6 0.3284 2.4461 1.5258 26 1 -0.3633 0.4002 0.9466 27 1 -0.3633 0.6197 -0.8199 28 1 -0.3634 -1.0198 -0.1267 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 4.0087 1.0060 0.7580 32 1 3.8520 0.8599 -1.0091 33 1 3.8342 3.4493 0.6054 34 1 5.1367 2.8793 -0.4656 35 1 3.5609 3.3447 -1.1503 36 1 2.1940 0.9842 -2.5829 37 1 2.9463 3.2759 -4.2251 38 1 1.5286 4.2024 -4.7737 39 1 2.0798 4.3349 -3.0867 40 1 -0.1490 1.5405 -7.7589 41 1 3.6430 2.1270 2.0637 42 1 3.0063 3.2316 4.1702 43 1 0.6532 3.8249 4.5871 44 1 -1.0622 3.3210 2.8938 45 1 -0.4240 2.2248 0.7832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075196408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:42 Heat of formation + Delta-G solvation = -18.129839 kcal Electronic energy + Delta-G solvation = -24438.851362 eV Core-core repulsion = 21228.053806 eV Total energy + Delta-G solvation = -3210.797556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76973 -38.36180 -35.84504 -34.93822 -32.67822 -32.33687 -30.37736 -30.27497 -29.55749 -26.85368 -25.18854 -23.39317 -22.25808 -22.02940 -21.90930 -20.22672 -19.01960 -17.48851 -16.51552 -15.98899 -15.53566 -15.29975 -14.94950 -14.74927 -14.40012 -14.04078 -13.64609 -13.32144 -13.06881 -12.91762 -12.65061 -12.60926 -12.42469 -12.29245 -12.17043 -11.87692 -11.64073 -11.58388 -11.23619 -11.19728 -10.98746 -10.83105 -10.77483 -10.39268 -10.35675 -10.16623 -9.68553 -9.22076 -8.98495 -8.75008 -8.63688 -8.51209 -8.10305 -6.20805 -4.22936 1.49661 1.59950 3.22949 3.29515 3.35315 3.39977 3.80851 4.13278 4.31781 4.57180 4.74523 4.96114 5.10369 5.11918 5.14679 5.23911 5.29115 5.30376 5.45077 5.50603 5.56305 5.65655 5.72678 5.93804 5.96789 5.98017 6.01407 6.11603 6.14337 6.21418 6.26242 6.32129 6.35456 6.42714 6.46446 6.58238 6.61038 6.68247 6.83111 6.87622 7.16003 7.21798 7.32387 7.53970 8.17385 8.55784 8.77023 8.98365 9.40705 10.91395 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.004822 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.863249 B = 5805.874808 C = 5864.550882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.043 4.043 4 C -0.113 4.113 5 C -0.163 4.163 6 C 0.522 3.478 7 O -0.549 6.549 8 N -0.699 5.699 9 C 0.238 3.762 10 H 0.047 0.953 11 C -0.161 4.161 12 C -0.533 4.533 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.893 5.893 16 Si 0.884 3.116 17 H -0.277 1.277 18 H -0.295 1.295 19 H -0.262 1.262 20 C -0.054 4.054 21 C -0.119 4.119 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.078 4.078 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.393 0.607 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.267 0.733 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -0.411 18.274 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.144 4.144 3 C -0.046 4.046 4 C -0.150 4.150 5 C -0.220 4.220 6 C 0.306 3.694 7 O -0.427 6.427 8 N -0.347 5.347 9 C 0.135 3.865 10 H 0.065 0.935 11 C -0.219 4.219 12 C -0.571 4.571 13 H 0.098 0.902 14 C -0.125 4.125 15 N -0.530 5.530 16 Si 0.714 3.286 17 H -0.204 1.204 18 H -0.222 1.222 19 H -0.187 1.187 20 C -0.054 4.054 21 C -0.136 4.136 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.096 4.096 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.227 0.773 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.954 0.271 18.180 18.844 hybrid contribution 0.004 0.639 -0.439 0.776 sum 4.958 0.910 17.740 18.443 Atomic orbital electron populations 1.22077 0.95331 1.02181 1.02668 1.21539 0.96853 0.93226 1.02737 1.19933 0.96519 0.95959 0.92203 1.21627 0.92439 0.98340 1.02631 1.21988 1.00745 0.96257 1.03024 1.20004 0.80670 0.84638 0.84051 1.90663 1.39966 1.27203 1.84879 1.46150 1.51891 1.31172 1.05474 1.19067 0.92708 0.90331 0.84442 0.93523 1.22449 1.01066 0.99088 0.99278 1.21036 1.43185 0.97745 0.95084 0.90228 1.24819 0.94646 0.97653 0.95360 1.69867 1.44467 1.35521 1.03131 0.86897 0.77921 0.85366 0.78410 1.20362 1.22205 1.18706 1.19289 0.93591 0.98681 0.93852 1.21152 0.99256 0.99526 0.93706 1.21006 0.96161 1.00441 0.97419 1.21070 0.93419 1.00671 0.99154 1.21125 0.99316 0.99959 0.94350 1.21240 0.96265 0.95954 0.96145 0.91941 0.91786 0.92402 0.90796 0.91125 0.90780 0.90867 0.91940 0.92574 0.91988 0.77328 0.92874 0.93564 0.94631 0.92328 0.85661 0.86588 0.86728 0.86493 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.39 37.16 0.31 -1.95 16 2 C -0.11 -1.33 4.84 -26.73 -0.13 -1.46 16 3 C -0.04 -0.60 0.39 -156.81 -0.06 -0.66 16 4 C -0.11 -1.34 4.36 -26.73 -0.12 -1.45 16 5 C -0.16 -2.11 9.11 37.16 0.34 -1.77 16 6 C 0.52 9.56 2.92 -10.98 -0.03 9.53 16 7 O -0.55 -12.00 13.85 5.55 0.08 -11.93 16 8 N -0.70 -13.56 4.88 -54.93 -0.27 -13.83 16 9 C 0.24 5.61 2.15 -69.08 -0.15 5.46 16 10 H 0.05 1.22 6.63 -51.93 -0.34 0.88 16 11 C -0.16 -3.59 8.96 37.15 0.33 -3.26 16 12 C -0.53 -14.21 9.31 -34.44 -0.32 -14.53 16 13 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 14 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 15 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 16 Si 0.88 21.83 24.37 -169.99 -4.14 17.68 16 17 H -0.28 -6.63 6.87 56.52 0.39 -6.25 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 20 C -0.05 -0.77 4.17 -104.63 -0.44 -1.20 16 21 C -0.12 -1.47 7.52 -39.58 -0.30 -1.77 16 22 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 23 C -0.13 -1.48 10.05 -39.58 -0.40 -1.87 16 24 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 25 C -0.08 -1.18 6.25 -39.59 -0.25 -1.43 16 26 H 0.06 0.82 5.56 -51.93 -0.29 0.53 16 27 H 0.06 1.06 6.74 -51.93 -0.35 0.71 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.89 7.72 -51.93 -0.40 0.48 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.72 6.53 -51.93 -0.34 0.38 16 32 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 33 H 0.06 0.81 5.80 -51.93 -0.30 0.51 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.98 6.88 -51.93 -0.36 0.62 16 36 H 0.39 6.85 7.61 -40.82 -0.31 6.54 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.07 3.28 -51.93 -0.17 0.90 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.13 1.32 5.20 -52.49 -0.27 1.05 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 45 H 0.13 2.13 5.35 -52.48 -0.28 1.85 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -30.88 337.76 -7.37 -38.25 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.80 Total: 8.59 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.10 Total: -18.32 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.51 Total: -39.36 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.88 -7.37 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075196408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.118 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds