Wall clock time and date at job start Tue Mar 31 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 C 1.53004 * 109.47039 * 185.38670 * 3 2 1 5 5 C 1.52999 * 109.47090 * 173.50581 * 4 3 2 6 6 C 1.50701 * 109.46851 * 305.37976 * 3 2 1 7 7 O 1.21284 * 119.99955 * 120.00315 * 6 3 2 8 8 N 1.34777 * 120.00352 * 300.00323 * 6 3 2 9 9 C 1.46502 * 120.00060 * 180.02562 * 8 6 3 10 10 H 1.09003 * 109.46684 * 324.99585 * 9 8 6 11 11 C 1.52993 * 109.47176 * 85.00134 * 9 8 6 12 12 C 1.50703 * 109.46816 * 205.00182 * 9 8 6 13 13 H 1.08002 * 119.99945 * 359.97438 * 12 9 8 14 14 C 1.37873 * 119.99906 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00125 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 119.99901 * 359.97438 * 14 12 9 17 17 H 1.48503 * 109.47045 * 90.00194 * 16 14 12 18 18 H 1.48500 * 109.47060 * 209.99979 * 16 14 12 19 19 H 1.48500 * 109.47064 * 330.00274 * 16 14 12 20 20 C 1.50692 * 109.47254 * 65.38309 * 3 2 1 21 21 C 1.38241 * 120.00219 * 108.18176 * 20 3 2 22 22 C 1.38226 * 120.00077 * 179.76879 * 21 20 3 23 23 C 1.38241 * 120.00170 * 0.47585 * 22 21 20 24 24 C 1.38236 * 119.99644 * 359.79438 * 23 22 21 25 25 C 1.38230 * 120.00304 * 288.44653 * 20 3 2 26 26 H 1.09004 * 109.47096 * 292.92054 * 1 2 3 27 27 H 1.09006 * 109.46810 * 52.91995 * 1 2 3 28 28 H 1.08997 * 109.47523 * 172.91904 * 1 2 3 29 29 H 1.08997 * 109.47509 * 239.99408 * 2 1 3 30 30 H 1.09006 * 109.47235 * 119.99580 * 2 1 3 31 31 H 1.09005 * 109.46636 * 293.49807 * 4 3 2 32 32 H 1.09000 * 109.47457 * 53.49470 * 4 3 2 33 33 H 1.08994 * 109.47355 * 63.99459 * 5 4 3 34 34 H 1.09005 * 109.46811 * 183.99853 * 5 4 3 35 35 H 1.09002 * 109.46544 * 303.99254 * 5 4 3 36 36 H 0.97001 * 119.99496 * 359.97438 * 8 6 3 37 37 H 1.08997 * 109.47331 * 59.99560 * 11 9 8 38 38 H 1.09002 * 109.47054 * 180.02562 * 11 9 8 39 39 H 1.09006 * 109.46811 * 299.99575 * 11 9 8 40 40 H 0.96997 * 120.00150 * 180.02562 * 15 14 12 41 41 H 1.08001 * 119.99624 * 359.97438 * 21 20 3 42 42 H 1.08001 * 119.99984 * 180.24952 * 22 21 20 43 43 H 1.08001 * 119.99774 * 179.77603 * 23 22 21 44 44 H 1.08006 * 119.99496 * 179.97438 * 24 23 22 45 45 H 1.08009 * 119.99784 * 0.02562 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4446 -0.1354 5 6 4.0596 2.8829 -0.2981 6 6 1.4318 2.1903 -1.1585 7 8 0.7485 3.1715 -0.9552 8 7 1.6472 1.7687 -2.4204 9 6 1.0564 2.4960 -3.5465 10 1 0.0784 2.8810 -3.2574 11 6 1.9684 3.6610 -3.9361 12 6 0.9022 1.5642 -4.7209 13 1 1.2136 0.5335 -4.6368 14 6 0.3637 2.0275 -5.9025 15 7 0.2296 1.2145 -6.9275 16 14 -0.1756 3.8101 -6.0475 17 1 0.9615 4.6334 -6.5318 18 1 -1.3033 3.9095 -7.0086 19 1 -0.6136 4.3045 -4.7175 20 6 1.6495 2.1134 1.2916 21 6 2.6115 2.3912 2.2447 22 6 2.2541 3.0109 3.4274 23 6 0.9330 3.3440 3.6614 24 6 -0.0299 3.0611 2.7108 25 6 0.3284 2.4461 1.5258 26 1 -0.3633 0.4002 0.9466 27 1 -0.3633 0.6197 -0.8199 28 1 -0.3634 -1.0198 -0.1267 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 4.0087 1.0060 0.7580 32 1 3.8520 0.8599 -1.0091 33 1 3.8342 3.4493 0.6054 34 1 5.1367 2.8793 -0.4656 35 1 3.5609 3.3447 -1.1503 36 1 2.1940 0.9842 -2.5829 37 1 2.9463 3.2759 -4.2251 38 1 1.5286 4.2024 -4.7737 39 1 2.0798 4.3349 -3.0867 40 1 -0.1490 1.5405 -7.7589 41 1 3.6430 2.1270 2.0637 42 1 3.0063 3.2316 4.1702 43 1 0.6532 3.8249 4.5871 44 1 -1.0622 3.3210 2.8938 45 1 -0.4240 2.2248 0.7832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075196408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:41 Heat of formation + Delta-G solvation = -37.096747 kcal Electronic energy + Delta-G solvation = -24439.673829 eV Core-core repulsion = 21228.053806 eV Total energy + Delta-G solvation = -3211.620023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98833 -39.60684 -37.10236 -36.65279 -34.34601 -33.69133 -31.78847 -31.33022 -30.84808 -27.97610 -27.23191 -24.62202 -23.49184 -23.10376 -22.95279 -21.80483 -20.48745 -18.94178 -18.10670 -17.42710 -17.09418 -16.59621 -16.32100 -15.81510 -15.58194 -15.26234 -15.07585 -14.95299 -14.37947 -14.36330 -14.14445 -13.89129 -13.74149 -13.58740 -13.39171 -13.24515 -13.07862 -12.80846 -12.76385 -12.59778 -12.28451 -12.16328 -11.95794 -11.79089 -11.63102 -11.41170 -11.36638 -11.26545 -10.87913 -10.44293 -9.81615 -9.63347 -9.50541 -8.38965 -6.43765 0.52334 0.62360 1.24156 1.32658 1.41837 1.85630 2.24196 2.46992 2.97294 3.02603 3.53708 3.66028 3.93589 4.03854 4.19323 4.24699 4.31131 4.35869 4.41863 4.43253 4.48457 4.50391 4.55914 4.69757 4.70982 4.76447 4.89552 4.97069 4.99992 5.00923 5.05594 5.12227 5.14088 5.25192 5.27987 5.31558 5.33913 5.39176 5.45464 5.66498 5.68768 5.72057 5.83307 6.14673 6.21926 6.57917 6.92623 7.19919 7.51243 8.76263 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.004822 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.863249 B = 5805.874808 C = 5864.550882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.034 4.034 4 C -0.111 4.111 5 C -0.161 4.161 6 C 0.523 3.477 7 O -0.588 6.588 8 N -0.699 5.699 9 C 0.245 3.755 10 H 0.016 0.984 11 C -0.153 4.153 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.032 3.968 15 N -0.932 5.932 16 Si 0.935 3.065 17 H -0.260 1.260 18 H -0.292 1.292 19 H -0.267 1.267 20 C -0.070 4.070 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.104 4.104 26 H 0.064 0.936 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.026 0.974 36 H 0.403 0.597 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.270 0.730 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.125 0.875 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.707 -0.225 20.735 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.142 4.142 3 C -0.037 4.037 4 C -0.149 4.149 5 C -0.218 4.218 6 C 0.311 3.689 7 O -0.468 6.468 8 N -0.347 5.347 9 C 0.140 3.860 10 H 0.034 0.966 11 C -0.211 4.211 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.168 4.168 15 N -0.571 5.571 16 Si 0.763 3.237 17 H -0.186 1.186 18 H -0.219 1.219 19 H -0.192 1.192 20 C -0.070 4.070 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.143 4.143 24 C -0.162 4.162 25 C -0.122 4.122 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.045 0.955 36 H 0.239 0.761 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.143 0.857 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.163 0.443 20.656 21.867 hybrid contribution -0.716 0.553 -1.110 1.432 sum 6.447 0.996 19.546 20.606 Atomic orbital electron populations 1.22038 0.96696 1.02046 1.01222 1.21599 0.95606 0.92552 1.04403 1.19916 0.97914 0.95922 0.89982 1.21713 0.90371 0.98061 1.04708 1.21973 1.01853 0.96588 1.01411 1.20791 0.79565 0.84141 0.84413 1.90637 1.41568 1.29209 1.85413 1.45965 1.52127 1.31436 1.05193 1.18680 0.92167 0.90477 0.84650 0.96574 1.22324 1.01145 0.98447 0.99148 1.21234 1.42052 0.97342 0.95988 0.92351 1.25486 0.94953 1.01064 0.95267 1.69966 1.46015 1.37280 1.03839 0.86070 0.78091 0.81526 0.78034 1.18583 1.21934 1.19242 1.19375 0.93659 0.99619 0.94373 1.21423 0.99791 0.98998 0.93429 1.21433 0.96703 0.99046 0.97638 1.21418 0.93374 0.99957 0.99579 1.21326 1.00457 1.00078 0.94308 1.21173 0.96497 0.97936 0.96589 0.91723 0.95632 0.91102 0.90213 0.88200 0.87381 0.90013 0.92034 0.90290 0.95524 0.76136 0.91570 0.94322 0.94025 0.92091 0.83340 0.83399 0.84076 0.85740 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 8.39 71.98 0.60 -3.91 16 2 C -0.10 -2.45 4.84 30.59 0.15 -2.30 16 3 C -0.03 -0.92 0.39 -53.67 -0.02 -0.94 16 4 C -0.11 -2.30 4.36 30.60 0.13 -2.17 16 5 C -0.16 -3.78 9.11 71.98 0.66 -3.13 16 6 C 0.52 19.46 2.92 87.66 0.26 19.71 16 7 O -0.59 -26.68 13.85 -3.04 -0.04 -26.72 16 8 N -0.70 -27.52 4.88 -446.09 -2.18 -29.70 16 9 C 0.25 11.80 2.15 44.24 0.10 11.90 16 10 H 0.02 0.89 6.63 -2.39 -0.02 0.87 16 11 C -0.15 -6.79 8.96 71.98 0.65 -6.14 16 12 C -0.53 -28.84 9.31 25.60 0.24 -28.60 16 13 H 0.06 3.37 7.98 -2.91 -0.02 3.35 16 14 C 0.03 1.82 5.45 84.65 0.46 2.28 16 15 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 16 Si 0.93 45.50 24.37 68.60 1.67 47.17 16 17 H -0.26 -11.90 6.87 99.48 0.68 -11.22 16 18 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 19 H -0.27 -13.13 6.53 99.48 0.65 -12.48 16 20 C -0.07 -1.90 4.17 -19.87 -0.08 -1.98 16 21 C -0.12 -2.56 7.52 22.27 0.17 -2.39 16 22 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 23 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 24 C -0.14 -3.72 10.05 22.27 0.22 -3.49 16 25 C -0.10 -3.17 6.25 22.27 0.14 -3.03 16 26 H 0.06 1.74 5.56 -2.38 -0.01 1.73 16 27 H 0.02 0.88 6.74 -2.38 -0.02 0.86 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 1.77 7.72 -2.39 -0.02 1.75 16 30 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.11 1.56 6.53 -2.38 -0.02 1.54 16 32 H 0.08 1.57 7.75 -2.39 -0.02 1.55 16 33 H 0.06 1.44 5.80 -2.39 -0.01 1.42 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.03 0.80 6.88 -2.39 -0.02 0.79 16 36 H 0.40 14.08 7.61 -92.71 -0.71 13.37 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.04 1.76 3.28 -2.39 -0.01 1.75 16 39 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.15 2.42 5.20 -2.91 -0.02 2.40 16 42 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.10 3.58 5.35 -2.91 -0.02 3.57 16 Total: -1.00 -69.16 337.76 4.07 -65.09 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.21 Total: 28.66 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 4.11 Total: -28.88 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.88 Total: -85.31 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.04 Total: -26.72 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.67 Total: 47.17 kcal Total: -69.16 4.07 -65.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075196408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.993 kcal (2) G-P(sol) polarization free energy of solvation -69.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds