Wall clock time and date at job start Tue Mar 31 2020 06:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 C 1.53005 * 109.47014 * 185.34134 * 3 2 1 5 5 C 1.53006 * 109.47153 * 173.50769 * 4 3 2 6 6 C 1.50697 * 109.47109 * 305.33839 * 3 2 1 7 7 O 1.21284 * 120.00014 * 120.00164 * 6 3 2 8 8 N 1.34775 * 120.00127 * 300.00019 * 6 3 2 9 9 C 1.46504 * 119.99490 * 180.02562 * 8 6 3 10 10 H 1.08997 * 109.47757 * 35.00437 * 9 8 6 11 11 C 1.52999 * 109.47013 * 274.99429 * 9 8 6 12 12 C 1.50703 * 109.46829 * 155.00271 * 9 8 6 13 13 H 1.07999 * 120.00156 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00064 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00148 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 119.99833 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46874 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47179 * 299.99328 * 16 14 12 19 19 H 1.48497 * 109.47183 * 59.99968 * 16 14 12 20 20 C 1.50697 * 109.46926 * 65.34145 * 3 2 1 21 21 C 1.38237 * 120.00204 * 108.15980 * 20 3 2 22 22 C 1.38235 * 120.00091 * 179.76919 * 21 20 3 23 23 C 1.38234 * 119.99870 * 0.49437 * 22 21 20 24 24 C 1.38238 * 119.99815 * 359.75838 * 23 22 21 25 25 C 1.38226 * 120.00089 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47475 * 52.86385 * 1 2 3 27 27 H 1.08999 * 109.46715 * 172.85802 * 1 2 3 28 28 H 1.09001 * 109.47111 * 292.86069 * 1 2 3 29 29 H 1.09007 * 109.46950 * 240.00511 * 2 1 3 30 30 H 1.08997 * 109.47426 * 120.00221 * 2 1 3 31 31 H 1.08999 * 109.46930 * 293.50292 * 4 3 2 32 32 H 1.08999 * 109.47216 * 53.50708 * 4 3 2 33 33 H 1.09002 * 109.47211 * 63.96038 * 5 4 3 34 34 H 1.08992 * 109.47326 * 183.97010 * 5 4 3 35 35 H 1.09005 * 109.46622 * 303.96376 * 5 4 3 36 36 H 0.96990 * 120.00450 * 359.97438 * 8 6 3 37 37 H 1.09007 * 109.47052 * 180.02562 * 11 9 8 38 38 H 1.08997 * 109.47805 * 300.00513 * 11 9 8 39 39 H 1.09001 * 109.46810 * 60.01104 * 11 9 8 40 40 H 0.96995 * 120.00564 * 180.02562 * 15 14 12 41 41 H 1.08003 * 119.99799 * 359.97438 * 21 20 3 42 42 H 1.07998 * 119.99584 * 180.23009 * 22 21 20 43 43 H 1.07998 * 120.00157 * 179.72801 * 23 22 21 44 44 H 1.08004 * 119.99564 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.99999 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5640 1.4446 -0.1343 5 6 4.0597 2.8830 -0.2970 6 6 1.4325 2.1900 -1.1590 7 8 0.7490 3.1713 -0.9565 8 7 1.6489 1.7682 -2.4206 9 6 1.0588 2.4954 -3.5473 10 1 1.0408 3.5617 -3.3223 11 6 -0.3694 1.9994 -3.7826 12 6 1.8835 2.2573 -4.7860 13 1 2.7598 1.6278 -4.7386 14 6 1.5200 2.8441 -5.9796 15 7 0.4533 3.6111 -6.0372 16 14 2.5428 2.5496 -7.5147 17 1 1.9446 3.2865 -8.6569 18 1 3.9288 3.0308 -7.2860 19 1 2.5674 1.0969 -7.8220 20 6 1.6484 2.1137 1.2912 21 6 2.6097 2.3913 2.2451 22 6 2.2514 3.0112 3.4275 23 6 0.9301 3.3443 3.6605 24 6 -0.0320 3.0619 2.7088 25 6 0.3273 2.4470 1.5241 26 1 -0.3634 0.6204 -0.8192 27 1 -0.3633 -1.0197 -0.1278 28 1 -0.3633 0.3992 0.9470 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 4.0081 1.0063 0.7594 32 1 3.8527 0.8599 -1.0077 33 1 3.8331 3.4498 0.6061 34 1 5.1369 2.8795 -0.4631 35 1 3.5621 3.3444 -1.1500 36 1 2.1958 0.9838 -2.5827 37 1 -0.8082 2.5401 -4.6212 38 1 -0.3513 0.9331 -4.0077 39 1 -0.9659 2.1716 -2.8867 40 1 0.1973 4.0236 -6.8769 41 1 3.6413 2.1268 2.0650 42 1 3.0030 3.2315 4.1711 43 1 0.6494 3.8247 4.5861 44 1 -1.0643 3.3218 2.8910 45 1 -0.4245 2.2260 0.7808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075196409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:45 Heat of formation + Delta-G solvation = -26.239807 kcal Electronic energy + Delta-G solvation = -24360.040789 eV Core-core repulsion = 21148.891558 eV Total energy + Delta-G solvation = -3211.149231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65451 -38.21847 -35.71143 -34.72139 -32.61831 -32.30286 -30.30326 -30.03917 -28.82731 -26.70615 -25.24436 -23.28288 -22.16827 -21.97894 -21.79609 -20.13819 -18.82196 -17.44938 -16.31722 -15.64180 -15.37964 -15.26357 -14.85295 -14.58615 -14.36880 -13.94175 -13.65708 -13.19051 -12.87197 -12.73341 -12.57295 -12.36908 -12.30545 -12.18946 -11.72587 -11.60167 -11.48953 -11.14479 -11.08607 -10.95914 -10.90935 -10.73270 -10.72626 -10.32988 -10.30975 -10.26798 -10.21457 -9.04105 -8.86432 -8.58574 -8.49808 -8.43729 -7.84999 -6.11054 -4.20211 1.56496 1.66445 3.25632 3.31108 3.32007 3.46984 3.91550 4.21478 4.41133 4.64548 4.83989 5.03105 5.16367 5.19372 5.21387 5.32381 5.34948 5.38593 5.51028 5.56400 5.64585 5.72517 5.79937 6.01438 6.02833 6.03119 6.07758 6.18317 6.19905 6.28178 6.32570 6.44516 6.55500 6.67441 6.74459 6.83874 6.90895 6.98070 7.17031 7.23121 7.49936 7.59261 7.71625 7.93809 8.16949 8.71462 8.80817 9.18564 9.47740 10.94782 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024272 B = 0.004534 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.301518 B = 6174.041245 C = 6413.712780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.045 4.045 4 C -0.111 4.111 5 C -0.163 4.163 6 C 0.520 3.480 7 O -0.547 6.547 8 N -0.707 5.707 9 C 0.267 3.733 10 H 0.047 0.953 11 C -0.145 4.145 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.900 3.100 17 H -0.286 1.286 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.052 4.052 21 C -0.119 4.119 22 C -0.132 4.132 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.078 4.078 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.386 0.614 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -6.301 15.587 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.143 4.143 3 C -0.048 4.048 4 C -0.149 4.149 5 C -0.220 4.220 6 C 0.304 3.696 7 O -0.426 6.426 8 N -0.354 5.354 9 C 0.165 3.835 10 H 0.065 0.935 11 C -0.204 4.204 12 C -0.571 4.571 13 H 0.078 0.922 14 C -0.136 4.136 15 N -0.521 5.521 16 Si 0.727 3.273 17 H -0.212 1.212 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.053 4.053 21 C -0.137 4.137 22 C -0.151 4.151 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.096 4.096 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.219 0.781 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.053 -5.462 15.542 16.755 hybrid contribution 0.772 -0.428 -1.025 1.353 sum 3.826 -5.889 14.517 16.126 Atomic orbital electron populations 1.22081 0.95452 1.01900 1.02812 1.21520 0.96723 0.93488 1.02519 1.19961 0.96543 0.95804 0.92501 1.21610 0.92500 0.98433 1.02351 1.21976 1.00719 0.96158 1.03121 1.19920 0.80870 0.84699 0.84085 1.90667 1.40076 1.27070 1.84788 1.46478 1.51618 1.31231 1.06078 1.18692 0.90205 0.92672 0.81936 0.93533 1.22068 0.98549 0.99376 1.00426 1.21177 1.11263 1.31267 0.93399 0.92222 1.24874 0.95151 0.94725 0.98881 1.69887 1.24378 1.31088 1.26751 0.86537 0.80297 0.78317 0.82106 1.21160 1.20204 1.20188 1.19302 0.93561 0.98599 0.93822 1.21158 0.99268 0.99549 0.93703 1.21000 0.96140 1.00473 0.97438 1.21058 0.93429 1.00736 0.99158 1.21119 0.99299 0.99998 0.94370 1.21230 0.96280 0.95979 0.96074 0.91786 0.92627 0.91875 0.91033 0.91234 0.91014 0.91009 0.92048 0.92672 0.91689 0.78138 0.89271 0.95552 0.96772 0.92565 0.85686 0.86627 0.86763 0.86523 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 8.39 37.15 0.31 -1.93 16 2 C -0.10 -1.33 4.84 -26.73 -0.13 -1.46 16 3 C -0.04 -0.66 0.39 -156.81 -0.06 -0.72 16 4 C -0.11 -1.43 4.36 -26.73 -0.12 -1.55 16 5 C -0.16 -2.35 9.11 37.16 0.34 -2.01 16 6 C 0.52 10.08 2.93 -10.99 -0.03 10.05 16 7 O -0.55 -12.77 13.85 5.55 0.08 -12.69 16 8 N -0.71 -14.38 4.88 -54.93 -0.27 -14.65 16 9 C 0.27 6.70 2.56 -69.08 -0.18 6.52 16 10 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 11 C -0.15 -3.59 9.26 37.16 0.34 -3.24 16 12 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -24.86 11.32 55.43 0.63 -24.23 16 16 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.05 -0.79 4.16 -104.63 -0.44 -1.22 16 21 C -0.12 -1.57 7.52 -39.58 -0.30 -1.86 16 22 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 23 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 24 C -0.13 -1.80 10.05 -39.59 -0.40 -2.20 16 25 C -0.08 -1.23 6.25 -39.59 -0.25 -1.48 16 26 H 0.06 1.05 6.74 -51.93 -0.35 0.70 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.83 5.57 -51.93 -0.29 0.55 16 29 H 0.07 0.85 7.72 -51.93 -0.40 0.45 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.76 6.53 -51.93 -0.34 0.42 16 32 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 33 H 0.06 0.88 5.81 -51.93 -0.30 0.58 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.17 6.88 -51.93 -0.36 0.81 16 36 H 0.39 6.96 7.61 -40.82 -0.31 6.65 16 37 H 0.09 2.40 6.07 -51.92 -0.32 2.09 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.13 1.42 5.20 -52.48 -0.27 1.15 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 45 H 0.13 2.21 5.35 -52.48 -0.28 1.93 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -30.00 344.57 -8.42 -38.42 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.94 Total: 10.05 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.09 Total: -17.66 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.36 Total: -38.88 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.00 -8.42 -38.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075196409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.177 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds