Wall clock time and date at job start Tue Mar 31 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 C 1.53005 * 109.47014 * 185.34134 * 3 2 1 5 5 C 1.53006 * 109.47153 * 173.50769 * 4 3 2 6 6 C 1.50697 * 109.47109 * 305.33839 * 3 2 1 7 7 O 1.21284 * 120.00014 * 120.00164 * 6 3 2 8 8 N 1.34775 * 120.00127 * 300.00019 * 6 3 2 9 9 C 1.46504 * 119.99490 * 180.02562 * 8 6 3 10 10 H 1.08997 * 109.47757 * 35.00437 * 9 8 6 11 11 C 1.52999 * 109.47013 * 274.99429 * 9 8 6 12 12 C 1.50703 * 109.46829 * 155.00271 * 9 8 6 13 13 H 1.07999 * 120.00156 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00064 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00148 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 119.99833 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46874 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47179 * 299.99328 * 16 14 12 19 19 H 1.48497 * 109.47183 * 59.99968 * 16 14 12 20 20 C 1.50697 * 109.46926 * 65.34145 * 3 2 1 21 21 C 1.38237 * 120.00204 * 108.15980 * 20 3 2 22 22 C 1.38235 * 120.00091 * 179.76919 * 21 20 3 23 23 C 1.38234 * 119.99870 * 0.49437 * 22 21 20 24 24 C 1.38238 * 119.99815 * 359.75838 * 23 22 21 25 25 C 1.38226 * 120.00089 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47475 * 52.86385 * 1 2 3 27 27 H 1.08999 * 109.46715 * 172.85802 * 1 2 3 28 28 H 1.09001 * 109.47111 * 292.86069 * 1 2 3 29 29 H 1.09007 * 109.46950 * 240.00511 * 2 1 3 30 30 H 1.08997 * 109.47426 * 120.00221 * 2 1 3 31 31 H 1.08999 * 109.46930 * 293.50292 * 4 3 2 32 32 H 1.08999 * 109.47216 * 53.50708 * 4 3 2 33 33 H 1.09002 * 109.47211 * 63.96038 * 5 4 3 34 34 H 1.08992 * 109.47326 * 183.97010 * 5 4 3 35 35 H 1.09005 * 109.46622 * 303.96376 * 5 4 3 36 36 H 0.96990 * 120.00450 * 359.97438 * 8 6 3 37 37 H 1.09007 * 109.47052 * 180.02562 * 11 9 8 38 38 H 1.08997 * 109.47805 * 300.00513 * 11 9 8 39 39 H 1.09001 * 109.46810 * 60.01104 * 11 9 8 40 40 H 0.96995 * 120.00564 * 180.02562 * 15 14 12 41 41 H 1.08003 * 119.99799 * 359.97438 * 21 20 3 42 42 H 1.07998 * 119.99584 * 180.23009 * 22 21 20 43 43 H 1.07998 * 120.00157 * 179.72801 * 23 22 21 44 44 H 1.08004 * 119.99564 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.99999 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5640 1.4446 -0.1343 5 6 4.0597 2.8830 -0.2970 6 6 1.4325 2.1900 -1.1590 7 8 0.7490 3.1713 -0.9565 8 7 1.6489 1.7682 -2.4206 9 6 1.0588 2.4954 -3.5473 10 1 1.0408 3.5617 -3.3223 11 6 -0.3694 1.9994 -3.7826 12 6 1.8835 2.2573 -4.7860 13 1 2.7598 1.6278 -4.7386 14 6 1.5200 2.8441 -5.9796 15 7 0.4533 3.6111 -6.0372 16 14 2.5428 2.5496 -7.5147 17 1 1.9446 3.2865 -8.6569 18 1 3.9288 3.0308 -7.2860 19 1 2.5674 1.0969 -7.8220 20 6 1.6484 2.1137 1.2912 21 6 2.6097 2.3913 2.2451 22 6 2.2514 3.0112 3.4275 23 6 0.9301 3.3443 3.6605 24 6 -0.0320 3.0619 2.7088 25 6 0.3273 2.4470 1.5241 26 1 -0.3634 0.6204 -0.8192 27 1 -0.3633 -1.0197 -0.1278 28 1 -0.3633 0.3992 0.9470 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 4.0081 1.0063 0.7594 32 1 3.8527 0.8599 -1.0077 33 1 3.8331 3.4498 0.6061 34 1 5.1369 2.8795 -0.4631 35 1 3.5621 3.3444 -1.1500 36 1 2.1958 0.9838 -2.5827 37 1 -0.8082 2.5401 -4.6212 38 1 -0.3513 0.9331 -4.0077 39 1 -0.9659 2.1716 -2.8867 40 1 0.1973 4.0236 -6.8769 41 1 3.6413 2.1268 2.0650 42 1 3.0030 3.2315 4.1711 43 1 0.6494 3.8247 4.5861 44 1 -1.0643 3.3218 2.8910 45 1 -0.4245 2.2260 0.7808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075196409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:44 Heat of formation + Delta-G solvation = -43.369571 kcal Electronic energy + Delta-G solvation = -24360.783591 eV Core-core repulsion = 21148.891558 eV Total energy + Delta-G solvation = -3211.892033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.93551 -39.53840 -37.01753 -36.56157 -34.22512 -33.68495 -31.33182 -31.25795 -30.57019 -27.91404 -27.33690 -24.55865 -23.46406 -23.10058 -22.93432 -21.79053 -20.36886 -18.86885 -17.83484 -17.11575 -17.07294 -16.60043 -16.25602 -15.84434 -15.48583 -15.24904 -15.05403 -14.49208 -14.46477 -14.12916 -14.00182 -13.66208 -13.55151 -13.40387 -13.24597 -12.96725 -12.85834 -12.75974 -12.69731 -12.59878 -12.29092 -12.26378 -12.13806 -11.94661 -11.78495 -11.39779 -11.35566 -11.09976 -10.62144 -10.35897 -9.67531 -9.62816 -9.49710 -8.16754 -6.34317 0.52945 0.62572 1.44183 1.46337 1.54029 1.94811 2.36108 2.63907 3.04994 3.13540 3.55793 3.68968 3.95169 4.10283 4.19813 4.24907 4.31587 4.35825 4.43068 4.49634 4.50973 4.70776 4.74149 4.77148 4.90319 4.92822 4.99232 5.00942 5.04264 5.09787 5.12572 5.14781 5.25343 5.28258 5.35622 5.39006 5.46336 5.63882 5.66614 5.70394 5.72154 5.83891 5.93976 6.11519 6.22278 6.74008 7.04728 7.33917 7.64293 8.89264 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024272 B = 0.004534 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.301518 B = 6174.041245 C = 6413.712780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.102 4.102 3 C -0.035 4.035 4 C -0.109 4.109 5 C -0.160 4.160 6 C 0.520 3.480 7 O -0.594 6.594 8 N -0.703 5.703 9 C 0.276 3.724 10 H -0.008 1.008 11 C -0.130 4.130 12 C -0.544 4.544 13 H 0.073 0.927 14 C 0.014 3.986 15 N -0.919 5.919 16 Si 0.971 3.029 17 H -0.287 1.287 18 H -0.271 1.271 19 H -0.263 1.263 20 C -0.070 4.070 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.104 4.104 26 H 0.025 0.975 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.018 0.982 36 H 0.400 0.600 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.125 0.875 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -8.236 17.182 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.140 4.140 3 C -0.038 4.038 4 C -0.146 4.146 5 C -0.217 4.217 6 C 0.308 3.692 7 O -0.475 6.475 8 N -0.351 5.351 9 C 0.173 3.827 10 H 0.010 0.990 11 C -0.188 4.188 12 C -0.582 4.582 13 H 0.091 0.909 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.795 3.205 17 H -0.213 1.213 18 H -0.196 1.196 19 H -0.187 1.187 20 C -0.071 4.071 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.162 4.162 25 C -0.122 4.122 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.037 0.963 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.143 0.857 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.790 -7.433 17.159 19.575 hybrid contribution -0.130 0.259 -1.428 1.457 sum 5.659 -7.174 15.731 18.192 Atomic orbital electron populations 1.22038 0.96590 1.02117 1.01223 1.21590 0.95682 0.92214 1.04494 1.19937 0.97726 0.96219 0.89967 1.21698 0.90634 0.97636 1.04679 1.21952 1.01747 0.96976 1.01048 1.20801 0.79674 0.84093 0.84677 1.90639 1.42032 1.29382 1.85469 1.46195 1.51898 1.31426 1.05614 1.18230 0.90795 0.90240 0.83480 0.99038 1.21864 0.98300 0.99624 0.99058 1.21508 1.11666 1.31347 0.93716 0.90900 1.25799 0.96196 0.94310 1.02254 1.70052 1.26101 1.32081 1.27484 0.85418 0.78527 0.78743 0.77777 1.21306 1.19566 1.18743 1.19411 0.93660 0.99592 0.94395 1.21431 0.99774 0.99126 0.93500 1.21435 0.96720 0.99047 0.97646 1.21416 0.93358 0.99988 0.99613 1.21333 1.00494 1.00089 0.94322 1.21170 0.96521 0.97960 0.96527 0.95578 0.90713 0.92015 0.89895 0.88218 0.87223 0.89959 0.92105 0.90345 0.96305 0.76488 0.91753 0.94187 0.97315 0.92651 0.83396 0.83357 0.83995 0.85702 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 8.39 71.98 0.60 -3.81 16 2 C -0.10 -2.40 4.84 30.59 0.15 -2.25 16 3 C -0.04 -1.01 0.39 -53.67 -0.02 -1.03 16 4 C -0.11 -2.50 4.36 30.60 0.13 -2.37 16 5 C -0.16 -4.38 9.11 71.98 0.66 -3.73 16 6 C 0.52 20.93 2.93 87.66 0.26 21.18 16 7 O -0.59 -29.70 13.85 -3.04 -0.04 -29.74 16 8 N -0.70 -29.46 4.88 -446.09 -2.18 -31.64 16 9 C 0.28 14.56 2.56 44.25 0.11 14.67 16 10 H -0.01 -0.52 7.58 -2.39 -0.02 -0.54 16 11 C -0.13 -6.72 9.26 71.98 0.67 -6.06 16 12 C -0.54 -29.00 8.73 25.60 0.22 -28.78 16 13 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 14 C 0.01 0.77 5.30 84.66 0.45 1.22 16 15 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 16 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 17 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 20 C -0.07 -2.05 4.16 -19.87 -0.08 -2.13 16 21 C -0.12 -2.83 7.52 22.27 0.17 -2.67 16 22 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 23 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 24 C -0.14 -3.98 10.05 22.27 0.22 -3.76 16 25 C -0.10 -3.37 6.25 22.27 0.14 -3.23 16 26 H 0.03 0.89 6.74 -2.39 -0.02 0.87 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.67 5.57 -2.39 -0.01 1.66 16 29 H 0.08 1.75 7.72 -2.38 -0.02 1.74 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.11 1.75 6.53 -2.39 -0.02 1.74 16 32 H 0.08 1.73 7.75 -2.39 -0.02 1.71 16 33 H 0.06 1.64 5.81 -2.39 -0.01 1.63 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.02 0.67 6.88 -2.38 -0.02 0.65 16 36 H 0.40 14.30 7.61 -92.72 -0.71 13.60 16 37 H 0.06 3.66 6.07 -2.38 -0.01 3.64 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.15 2.70 5.20 -2.91 -0.02 2.68 16 42 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 43 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 44 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 45 H 0.10 3.76 5.35 -2.91 -0.02 3.75 16 Total: -1.00 -69.84 344.57 4.45 -65.38 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.28 Total: 32.86 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 4.12 Total: -27.86 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.93 Total: -84.89 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.04 Total: -29.74 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -69.84 4.45 -65.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075196409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.014 kcal (2) G-P(sol) polarization free energy of solvation -69.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds