Wall clock time and date at job start Tue Mar 31 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47287 * 2 1 4 4 C 1.38235 * 120.00030 * 89.99433 * 3 2 1 5 5 C 1.38232 * 119.99859 * 180.02562 * 4 3 2 6 6 C 1.38230 * 120.00275 * 359.95210 * 5 4 3 7 7 C 1.50704 * 120.00105 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46980 * 0.02562 * 7 6 5 9 9 C 1.52997 * 109.47121 * 120.00021 * 7 6 5 10 10 C 1.52998 * 109.46776 * 240.00079 * 7 6 5 11 11 C 1.50702 * 109.47141 * 174.99975 * 10 7 6 12 12 O 1.21292 * 119.99744 * 0.02562 * 11 10 7 13 13 N 1.34771 * 120.00269 * 179.72611 * 11 10 7 14 14 C 1.37105 * 120.00139 * 180.27609 * 13 11 10 15 15 H 1.08001 * 119.99487 * 318.83059 * 14 13 11 16 16 C 1.38939 * 120.00247 * 138.82714 * 14 13 11 17 17 N 1.31413 * 119.99874 * 341.83826 * 16 14 13 18 18 Si 1.86802 * 120.00418 * 161.83442 * 16 14 13 19 19 H 1.48504 * 109.46894 * 89.99961 * 18 16 14 20 20 H 1.48492 * 109.47492 * 210.00345 * 18 16 14 21 21 H 1.48500 * 109.46845 * 330.00441 * 18 16 14 22 22 C 1.46500 * 119.99979 * 0.27201 * 13 11 10 23 23 C 1.53007 * 109.46768 * 84.75611 * 22 13 11 24 24 C 1.38234 * 119.99913 * 0.27941 * 6 5 4 25 25 C 1.38228 * 119.99985 * 269.97747 * 3 2 1 26 26 H 1.09001 * 109.46825 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47343 * 299.99994 * 1 2 3 28 28 H 1.09004 * 109.47077 * 60.00360 * 1 2 3 29 29 H 1.08997 * 109.47553 * 239.99640 * 2 1 3 30 30 H 1.09004 * 109.47077 * 119.99640 * 2 1 3 31 31 H 1.08004 * 119.99894 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.99830 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.46654 * 60.00100 * 9 7 6 34 34 H 1.08999 * 109.47397 * 179.97438 * 9 7 6 35 35 H 1.09000 * 109.47474 * 300.00066 * 9 7 6 36 36 H 1.09001 * 109.47347 * 55.00111 * 10 7 6 37 37 H 1.09004 * 109.47360 * 294.99840 * 10 7 6 38 38 H 0.97005 * 120.00067 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47184 * 204.75403 * 22 13 11 40 40 H 1.08995 * 109.47451 * 324.76282 * 22 13 11 41 41 H 1.09005 * 109.47109 * 60.00140 * 23 22 13 42 42 H 1.08994 * 109.46927 * 179.97438 * 23 22 13 43 43 H 1.08996 * 109.47098 * 299.99844 * 23 22 13 44 44 H 1.08004 * 120.00316 * 179.72329 * 24 6 5 45 45 H 1.08001 * 120.00014 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3759 1.1971 6 6 2.9539 4.0274 0.0000 7 6 3.4563 5.4482 0.0000 8 1 3.5774 5.7908 1.0277 9 6 4.8044 5.5125 -0.7206 10 6 2.4488 6.3453 -0.7218 11 6 2.8895 7.7825 -0.6156 12 8 3.9094 8.0617 -0.0214 13 7 2.1537 8.7570 -1.1859 14 6 2.5576 10.0639 -1.0941 15 1 2.9592 10.4409 -0.1650 16 6 2.4506 10.9033 -2.1961 17 7 2.3102 10.3935 -3.3991 18 14 2.5060 12.7565 -1.9677 19 1 3.9123 13.2247 -2.0598 20 1 1.6962 13.4103 -3.0268 21 1 1.9537 13.1076 -0.6347 22 6 0.9222 8.4197 -1.9042 23 6 -0.2370 8.3208 -0.9103 24 6 2.7191 3.3773 -1.1971 25 6 2.2632 2.0723 -1.1971 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0821 1.5635 2.1325 32 1 2.9025 3.8852 2.1324 33 1 4.6837 5.1698 -1.7483 34 1 5.1676 6.5402 -0.7210 35 1 5.5222 4.8733 -0.2064 36 1 1.4668 6.2315 -0.2627 37 1 2.3943 6.0587 -1.7721 38 1 2.2358 10.9795 -4.1686 39 1 0.7058 9.1954 -2.6386 40 1 1.0479 7.4635 -2.4119 41 1 -0.3628 9.2771 -0.4025 42 1 -1.1533 8.0703 -1.4447 43 1 -0.0206 7.5450 -0.1759 44 1 2.8952 3.8878 -2.1325 45 1 2.0839 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078090807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:39 Heat of formation + Delta-G solvation = -33.869842 kcal Electronic energy + Delta-G solvation = -23076.618274 eV Core-core repulsion = 19865.138180 eV Total energy + Delta-G solvation = -3211.480094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.71596 -38.52503 -35.74795 -34.73575 -32.83082 -31.96637 -30.82033 -29.38823 -28.67865 -27.41815 -24.76254 -24.03544 -22.69589 -22.24946 -21.50605 -19.97471 -18.41616 -16.80692 -16.42917 -15.63468 -15.56733 -14.98143 -14.78133 -14.29987 -14.08362 -13.89806 -13.74925 -13.41422 -13.09397 -12.91778 -12.84891 -12.77045 -12.36097 -12.13346 -11.73642 -11.67634 -11.52104 -11.37181 -11.10794 -10.99911 -10.95796 -10.90142 -10.66294 -10.44467 -10.32097 -10.30206 -10.18588 -9.99815 -8.87731 -8.80237 -8.40027 -8.20232 -7.35890 -6.27878 -3.95936 1.45751 1.52106 3.19824 3.27712 3.32709 3.85246 3.99311 4.20400 4.68147 4.76593 4.84368 5.04413 5.08488 5.10421 5.20848 5.22587 5.41033 5.45221 5.58270 5.61112 5.65458 5.72182 5.80991 5.86134 5.89080 6.00415 6.02891 6.12780 6.21162 6.22239 6.24020 6.30301 6.35302 6.51422 6.55308 6.57161 6.62330 6.67713 6.89932 6.92242 7.01576 7.14886 7.25567 7.62123 8.35294 8.57888 9.25851 9.46518 10.09671 10.77293 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.003449 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.714490 B = 8116.382557 C = 8513.791382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.097 4.097 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.068 4.068 7 C -0.034 4.034 8 H 0.081 0.919 9 C -0.144 4.144 10 C -0.126 4.126 11 C 0.465 3.535 12 O -0.578 6.578 13 N -0.444 5.444 14 C -0.308 4.308 15 H 0.086 0.914 16 C 0.038 3.962 17 N -0.873 5.873 18 Si 0.916 3.084 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.104 3.896 23 C -0.165 4.165 24 C -0.111 4.111 25 C -0.117 4.117 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.122 0.878 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 -16.965 3.582 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.097 4.097 4 C -0.136 4.136 5 C -0.134 4.134 6 C -0.068 4.068 7 C -0.053 4.053 8 H 0.099 0.901 9 C -0.201 4.201 10 C -0.166 4.166 11 C 0.253 3.747 12 O -0.462 6.462 13 N -0.163 5.163 14 C -0.436 4.436 15 H 0.104 0.896 16 C -0.166 4.166 17 N -0.511 5.511 18 Si 0.742 3.258 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.020 4.020 23 C -0.224 4.224 24 C -0.129 4.129 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.140 0.860 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.076 -16.732 3.664 17.606 hybrid contribution -0.172 0.877 -0.150 0.907 sum -4.248 -15.854 3.515 16.785 Atomic orbital electron populations 1.21749 0.94916 1.01392 1.02331 1.20499 0.96052 0.92959 1.02442 1.19809 1.00394 0.96145 0.93327 1.20943 1.00496 0.94943 0.97240 1.21087 0.99870 0.94707 0.97750 1.20095 0.97492 0.96221 0.92964 1.19874 0.95154 0.88995 1.01282 0.90051 1.21924 0.95449 1.04075 0.98695 1.21712 0.99227 0.94354 1.01348 1.20338 0.84273 0.86343 0.83758 1.90470 1.25737 1.83555 1.46437 1.43459 1.18983 1.05782 1.48102 1.19344 1.42305 0.84456 0.97458 0.89601 1.25403 0.96537 1.00297 0.94370 1.69930 1.47567 1.35705 0.97884 0.86113 0.78394 0.83137 0.78106 1.20322 1.20896 1.19461 1.21429 0.84419 1.01091 0.95091 1.22226 0.98452 1.01559 1.00121 1.21048 0.99290 0.94495 0.98041 1.20970 1.00344 0.94938 0.97264 0.92671 0.92576 0.92512 0.91324 0.91376 0.86573 0.86187 0.93616 0.89498 0.93721 0.90579 0.90261 0.92378 0.87991 0.93433 0.92483 0.93190 0.93849 0.86021 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.08 -0.71 6.06 -27.88 -0.17 -0.88 16 3 C -0.10 -1.09 5.13 -104.62 -0.54 -1.63 16 4 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 5 C -0.12 -1.54 9.67 -39.59 -0.38 -1.92 16 6 C -0.07 -0.99 4.78 -104.62 -0.50 -1.49 16 7 C -0.03 -0.58 2.21 -91.77 -0.20 -0.78 16 8 H 0.08 1.46 7.69 -51.93 -0.40 1.07 16 9 C -0.14 -2.51 8.75 37.16 0.33 -2.19 16 10 C -0.13 -2.36 3.52 -27.88 -0.10 -2.46 16 11 C 0.46 11.24 7.31 -10.99 -0.08 11.16 16 12 O -0.58 -15.72 13.88 5.55 0.08 -15.64 16 13 N -0.44 -11.24 2.50 -114.81 -0.29 -11.53 16 14 C -0.31 -8.56 8.84 -14.93 -0.13 -8.70 16 15 H 0.09 2.50 7.82 -52.49 -0.41 2.09 16 16 C 0.04 1.01 4.95 -17.47 -0.09 0.93 16 17 N -0.87 -23.74 11.61 55.50 0.64 -23.09 16 18 Si 0.92 20.78 29.59 -169.99 -5.03 15.75 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 C 0.10 2.27 5.41 -4.04 -0.02 2.24 16 23 C -0.17 -3.00 10.15 37.16 0.38 -2.63 16 24 C -0.11 -1.50 8.76 -39.58 -0.35 -1.85 16 25 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.12 1.47 7.95 -52.49 -0.42 1.05 16 33 H 0.04 0.74 7.40 -51.93 -0.38 0.35 16 34 H 0.09 1.81 5.95 -51.93 -0.31 1.51 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.33 6.56 -51.93 -0.34 0.99 16 37 H 0.08 1.42 6.82 -51.93 -0.35 1.07 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 39 H 0.10 2.45 5.76 -51.93 -0.30 2.15 16 40 H 0.05 0.95 6.65 -51.93 -0.35 0.61 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.04 0.74 6.62 -51.93 -0.34 0.40 16 44 H 0.12 1.60 7.16 -52.48 -0.38 1.23 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -30.35 359.58 -8.77 -39.11 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.34 Total: 4.54 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.26 Total: -14.56 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.36 Total: -34.63 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.08 Total: -15.64 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.35 -8.77 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078090807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.244 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds