Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.46822 * 2 1 4 4 C 1.38238 * 120.00372 * 269.72760 * 3 2 1 5 5 C 1.38237 * 120.00318 * 179.79047 * 4 3 2 6 6 C 1.38232 * 119.99704 * 0.44259 * 5 4 3 7 7 C 1.50701 * 120.00083 * 179.83351 * 6 5 4 8 8 H 1.09007 * 109.47324 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46722 * 59.97788 * 7 6 5 10 10 C 1.52994 * 109.47133 * 299.97901 * 7 6 5 11 11 C 1.50704 * 109.47205 * 184.99801 * 10 7 6 12 12 O 1.21290 * 119.99969 * 0.02562 * 11 10 7 13 13 N 1.34775 * 120.00045 * 179.97438 * 11 10 7 14 14 C 1.37093 * 120.00203 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99866 * 326.16145 * 14 13 11 16 16 C 1.38949 * 120.00004 * 146.16042 * 14 13 11 17 17 N 1.31409 * 120.00410 * 337.69410 * 16 14 13 18 18 Si 1.86806 * 119.99777 * 157.69079 * 16 14 13 19 19 H 1.48505 * 109.46779 * 60.00026 * 18 16 14 20 20 H 1.48497 * 109.47358 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47280 * 300.00581 * 18 16 14 22 22 C 1.46502 * 119.99947 * 0.02562 * 13 11 10 23 23 C 1.53004 * 109.47379 * 84.74737 * 22 13 11 24 24 C 1.38240 * 120.00154 * 359.80924 * 6 5 4 25 25 C 1.38231 * 120.00196 * 359.97438 * 24 6 5 26 26 H 1.09001 * 109.46990 * 59.99868 * 1 2 3 27 27 H 1.09002 * 109.46701 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46774 * 299.99351 * 1 2 3 29 29 H 1.08989 * 109.47366 * 120.00144 * 2 1 3 30 30 H 1.08999 * 109.46774 * 240.00649 * 2 1 3 31 31 H 1.08000 * 119.99826 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.00524 * 180.27492 * 5 4 3 33 33 H 1.09000 * 109.47451 * 299.99854 * 9 7 6 34 34 H 1.09000 * 109.47618 * 60.00641 * 9 7 6 35 35 H 1.09005 * 109.46906 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.47227 * 304.99881 * 10 7 6 37 37 H 1.09002 * 109.47233 * 64.99518 * 10 7 6 38 38 H 0.96995 * 120.00077 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.47357 * 204.74705 * 22 13 11 40 40 H 1.09005 * 109.46942 * 324.74400 * 22 13 11 41 41 H 1.08999 * 109.46901 * 179.97438 * 23 22 13 42 42 H 1.09001 * 109.46418 * 300.00095 * 23 22 13 43 43 H 1.09000 * 109.46933 * 60.00089 * 23 22 13 44 44 H 1.08004 * 119.99956 * 180.02562 * 24 6 5 45 45 H 1.07994 * 120.00523 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0707 -1.1971 5 6 2.7247 3.3754 -1.1971 6 6 2.9542 4.0273 0.0000 7 6 3.4556 5.4485 0.0001 8 1 3.5757 5.7914 1.0278 9 6 2.4476 6.3448 -0.7220 10 6 4.8037 5.5137 -0.7202 11 6 5.3632 6.9091 -0.6138 12 8 4.7446 7.7668 -0.0198 13 7 6.5513 7.2036 -1.1778 14 6 7.0605 8.4727 -1.0806 15 1 6.3945 9.3229 -1.0771 16 6 8.4334 8.6651 -0.9865 17 7 9.2053 7.6925 -0.5566 18 14 9.1817 10.3066 -1.4714 19 1 8.6096 11.3817 -0.6215 20 1 10.6535 10.2556 -1.2801 21 1 8.8768 10.5879 -2.8972 22 6 7.2987 6.1674 -1.8948 23 6 6.7951 6.0809 -3.3370 24 6 2.7235 3.3758 1.1972 25 6 2.2626 2.0725 1.1972 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 2.0919 1.5602 -2.1324 32 1 2.9046 3.8846 -2.1323 33 1 2.3274 6.0020 -1.7497 34 1 1.4871 6.2985 -0.2088 35 1 2.8104 7.3727 -0.7223 36 1 5.4960 4.8087 -0.2601 37 1 4.6674 5.2561 -1.7705 38 1 10.1637 7.8268 -0.4913 39 1 8.3594 6.4187 -1.8948 40 1 7.1529 5.2067 -1.4008 41 1 7.3515 5.3103 -3.8705 42 1 5.7344 5.8296 -3.3369 43 1 6.9409 7.0416 -3.8309 44 1 2.9024 3.8853 2.1326 45 1 2.0827 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078090808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -32.147671 kcal Electronic energy + Delta-G solvation = -23043.833272 eV Core-core repulsion = 19832.427857 eV Total energy + Delta-G solvation = -3211.405415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.71841 -38.53750 -35.76878 -34.76005 -32.83996 -31.95447 -30.82171 -29.42095 -28.68228 -27.44413 -24.77088 -24.05646 -22.70174 -22.26678 -21.48813 -19.96880 -18.43222 -16.83639 -16.42221 -15.64529 -15.55685 -15.01230 -14.75037 -14.38598 -14.11797 -13.79156 -13.70084 -13.40150 -13.21788 -12.96454 -12.82883 -12.76562 -12.45163 -11.92420 -11.79170 -11.76235 -11.53164 -11.38554 -11.15945 -11.07106 -10.92672 -10.89233 -10.63935 -10.44963 -10.38158 -10.32304 -10.09432 -10.00405 -8.89668 -8.80291 -8.40613 -8.21477 -7.43806 -6.29647 -3.90203 1.45756 1.52143 3.20813 3.26780 3.30579 3.85076 3.97674 4.18749 4.67541 4.76618 4.84041 5.03777 5.07770 5.10264 5.18669 5.22172 5.40268 5.44696 5.58109 5.60079 5.65395 5.71003 5.79976 5.84573 5.89617 5.98951 6.03176 6.11266 6.13651 6.22483 6.25985 6.27891 6.41768 6.45675 6.54881 6.55576 6.63166 6.67634 6.89448 6.92480 6.97185 7.14516 7.30921 7.62825 8.28946 8.56132 9.24071 9.47780 10.08331 10.74079 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.003308 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.772129 B = 8462.949871 C = 8700.660827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.097 4.097 4 C -0.118 4.118 5 C -0.111 4.111 6 C -0.068 4.068 7 C -0.035 4.035 8 H 0.082 0.918 9 C -0.144 4.144 10 C -0.125 4.125 11 C 0.459 3.541 12 O -0.581 6.581 13 N -0.442 5.442 14 C -0.306 4.306 15 H 0.091 0.909 16 C 0.034 3.966 17 N -0.871 5.871 18 Si 0.916 3.084 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.095 3.905 23 C -0.164 4.164 24 C -0.115 4.115 25 C -0.118 4.118 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.267 0.733 39 H 0.112 0.888 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.056 0.944 44 H 0.121 0.879 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.164 -14.060 -1.926 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.097 4.097 4 C -0.136 4.136 5 C -0.129 4.129 6 C -0.068 4.068 7 C -0.054 4.054 8 H 0.101 0.899 9 C -0.201 4.201 10 C -0.165 4.165 11 C 0.247 3.753 12 O -0.466 6.466 13 N -0.161 5.161 14 C -0.434 4.434 15 H 0.109 0.891 16 C -0.169 4.169 17 N -0.509 5.509 18 Si 0.743 3.257 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.029 4.029 23 C -0.222 4.222 24 C -0.133 4.133 25 C -0.136 4.136 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.139 0.861 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.240 -13.655 -1.602 17.758 hybrid contribution 0.629 0.569 -0.276 0.892 sum -10.611 -13.085 -1.877 16.951 Atomic orbital electron populations 1.21749 0.94986 1.01381 1.02224 1.20501 0.95980 0.92983 1.02533 1.19809 1.00405 0.96119 0.93326 1.20960 1.00414 0.94941 0.97245 1.21014 0.99481 0.94506 0.97939 1.20093 0.97513 0.96188 0.92972 1.19879 0.94169 0.89857 1.01465 0.89917 1.21918 0.97540 1.02019 0.98590 1.21683 0.96323 0.97308 1.01171 1.20265 0.84329 0.89147 0.81520 1.90467 1.60587 1.49900 1.45606 1.43537 1.17036 1.10054 1.45473 1.19409 0.90672 0.83751 1.49598 0.89126 1.25313 0.96877 0.98700 0.96051 1.69916 1.05576 1.33625 1.41790 0.86162 0.77614 0.82541 0.79386 1.19786 1.21037 1.19970 1.21579 1.01348 0.90272 0.89693 1.22207 1.00011 1.01298 0.98702 1.21108 0.99707 0.94688 0.97818 1.20953 1.00413 0.94928 0.97265 0.92596 0.92662 0.92615 0.91306 0.91287 0.86533 0.86143 0.93748 0.93670 0.89611 0.90394 0.90521 0.92254 0.86986 0.93472 0.93184 0.93948 0.92512 0.86115 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.90 37.16 0.37 -0.77 16 2 C -0.08 -0.72 6.07 -27.88 -0.17 -0.89 16 3 C -0.10 -1.09 5.13 -104.62 -0.54 -1.63 16 4 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 5 C -0.11 -1.49 8.76 -39.58 -0.35 -1.83 16 6 C -0.07 -0.99 4.78 -104.62 -0.50 -1.49 16 7 C -0.03 -0.59 2.21 -91.77 -0.20 -0.79 16 8 H 0.08 1.53 7.69 -51.93 -0.40 1.13 16 9 C -0.14 -2.40 8.75 37.16 0.33 -2.07 16 10 C -0.12 -2.33 3.52 -27.88 -0.10 -2.43 16 11 C 0.46 11.09 7.31 -10.98 -0.08 11.01 16 12 O -0.58 -15.76 13.79 5.55 0.08 -15.69 16 13 N -0.44 -11.22 2.56 -114.80 -0.29 -11.51 16 14 C -0.31 -8.53 8.98 -14.94 -0.13 -8.66 16 15 H 0.09 2.64 7.70 -52.48 -0.40 2.23 16 16 C 0.03 0.91 4.92 -17.47 -0.09 0.82 16 17 N -0.87 -23.57 11.33 55.50 0.63 -22.94 16 18 Si 0.92 20.70 29.61 -169.99 -5.03 15.67 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 22 C 0.10 2.09 5.43 -4.04 -0.02 2.07 16 23 C -0.16 -2.98 10.15 37.16 0.38 -2.61 16 24 C -0.12 -1.56 9.67 -39.58 -0.38 -1.94 16 25 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.55 8.08 -51.94 -0.42 0.13 16 30 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.52 7.16 -52.49 -0.38 1.14 16 33 H 0.04 0.67 7.39 -51.93 -0.38 0.28 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.70 5.95 -51.93 -0.31 1.39 16 36 H 0.08 1.44 7.41 -51.93 -0.38 1.05 16 37 H 0.08 1.30 5.97 -51.93 -0.31 0.99 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.11 2.72 5.34 -51.93 -0.28 2.44 16 40 H 0.05 0.95 6.66 -51.93 -0.35 0.61 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.72 6.60 -51.93 -0.34 0.37 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.12 1.53 7.95 -52.48 -0.42 1.11 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -30.23 358.85 -8.78 -39.01 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.31 Total: 4.83 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.26 Total: -14.77 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.34 Total: -34.45 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.69 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.23 -8.78 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078090808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.861 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds