Wall clock time and date at job start Tue Mar 31 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.46822 * 2 1 4 4 C 1.38238 * 120.00372 * 269.72760 * 3 2 1 5 5 C 1.38237 * 120.00318 * 179.79047 * 4 3 2 6 6 C 1.38232 * 119.99704 * 0.44259 * 5 4 3 7 7 C 1.50701 * 120.00083 * 179.83351 * 6 5 4 8 8 H 1.09007 * 109.47324 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46722 * 59.97788 * 7 6 5 10 10 C 1.52994 * 109.47133 * 299.97901 * 7 6 5 11 11 C 1.50704 * 109.47205 * 184.99801 * 10 7 6 12 12 O 1.21290 * 119.99969 * 0.02562 * 11 10 7 13 13 N 1.34775 * 120.00045 * 179.97438 * 11 10 7 14 14 C 1.37093 * 120.00203 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99866 * 326.16145 * 14 13 11 16 16 C 1.38949 * 120.00004 * 146.16042 * 14 13 11 17 17 N 1.31409 * 120.00410 * 337.69410 * 16 14 13 18 18 Si 1.86806 * 119.99777 * 157.69079 * 16 14 13 19 19 H 1.48505 * 109.46779 * 60.00026 * 18 16 14 20 20 H 1.48497 * 109.47358 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47280 * 300.00581 * 18 16 14 22 22 C 1.46502 * 119.99947 * 0.02562 * 13 11 10 23 23 C 1.53004 * 109.47379 * 84.74737 * 22 13 11 24 24 C 1.38240 * 120.00154 * 359.80924 * 6 5 4 25 25 C 1.38231 * 120.00196 * 359.97438 * 24 6 5 26 26 H 1.09001 * 109.46990 * 59.99868 * 1 2 3 27 27 H 1.09002 * 109.46701 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46774 * 299.99351 * 1 2 3 29 29 H 1.08989 * 109.47366 * 120.00144 * 2 1 3 30 30 H 1.08999 * 109.46774 * 240.00649 * 2 1 3 31 31 H 1.08000 * 119.99826 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.00524 * 180.27492 * 5 4 3 33 33 H 1.09000 * 109.47451 * 299.99854 * 9 7 6 34 34 H 1.09000 * 109.47618 * 60.00641 * 9 7 6 35 35 H 1.09005 * 109.46906 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.47227 * 304.99881 * 10 7 6 37 37 H 1.09002 * 109.47233 * 64.99518 * 10 7 6 38 38 H 0.96995 * 120.00077 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.47357 * 204.74705 * 22 13 11 40 40 H 1.09005 * 109.46942 * 324.74400 * 22 13 11 41 41 H 1.08999 * 109.46901 * 179.97438 * 23 22 13 42 42 H 1.09001 * 109.46418 * 300.00095 * 23 22 13 43 43 H 1.09000 * 109.46933 * 60.00089 * 23 22 13 44 44 H 1.08004 * 119.99956 * 180.02562 * 24 6 5 45 45 H 1.07994 * 120.00523 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0707 -1.1971 5 6 2.7247 3.3754 -1.1971 6 6 2.9542 4.0273 0.0000 7 6 3.4556 5.4485 0.0001 8 1 3.5757 5.7914 1.0278 9 6 2.4476 6.3448 -0.7220 10 6 4.8037 5.5137 -0.7202 11 6 5.3632 6.9091 -0.6138 12 8 4.7446 7.7668 -0.0198 13 7 6.5513 7.2036 -1.1778 14 6 7.0605 8.4727 -1.0806 15 1 6.3945 9.3229 -1.0771 16 6 8.4334 8.6651 -0.9865 17 7 9.2053 7.6925 -0.5566 18 14 9.1817 10.3066 -1.4714 19 1 8.6096 11.3817 -0.6215 20 1 10.6535 10.2556 -1.2801 21 1 8.8768 10.5879 -2.8972 22 6 7.2987 6.1674 -1.8948 23 6 6.7951 6.0809 -3.3370 24 6 2.7235 3.3758 1.1972 25 6 2.2626 2.0725 1.1972 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 2.0919 1.5602 -2.1324 32 1 2.9046 3.8846 -2.1323 33 1 2.3274 6.0020 -1.7497 34 1 1.4871 6.2985 -0.2088 35 1 2.8104 7.3727 -0.7223 36 1 5.4960 4.8087 -0.2601 37 1 4.6674 5.2561 -1.7705 38 1 10.1637 7.8268 -0.4913 39 1 8.3594 6.4187 -1.8948 40 1 7.1529 5.2067 -1.4008 41 1 7.3515 5.3103 -3.8705 42 1 5.7344 5.8296 -3.3369 43 1 6.9409 7.0416 -3.8309 44 1 2.9024 3.8853 2.1326 45 1 2.0827 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078090808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:41 Heat of formation + Delta-G solvation = -46.369391 kcal Electronic energy + Delta-G solvation = -23044.449973 eV Core-core repulsion = 19832.427857 eV Total energy + Delta-G solvation = -3212.022115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97008 -40.11067 -37.25995 -36.32541 -34.10595 -33.69056 -31.76703 -31.15631 -29.78096 -28.90868 -26.59745 -25.08410 -23.92145 -23.64104 -22.59565 -21.18957 -20.10889 -18.73388 -17.97897 -17.03635 -16.76772 -16.60687 -15.92937 -15.83822 -15.81657 -14.84825 -14.68714 -14.55379 -14.45215 -14.38425 -14.34814 -13.95052 -13.59344 -13.53215 -13.42365 -13.04921 -12.86174 -12.68972 -12.64497 -12.37018 -12.23400 -12.14207 -12.08225 -12.04218 -11.77556 -11.70261 -11.51971 -11.42014 -10.86314 -10.21224 -9.75644 -9.42971 -9.34057 -8.32686 -6.01551 0.47911 0.56616 1.38577 1.40978 1.51241 2.09115 2.30581 2.87144 3.03161 3.13333 3.77820 3.84154 3.98922 4.10386 4.21221 4.21578 4.27911 4.32492 4.41279 4.54889 4.57190 4.62797 4.65314 4.70241 4.72015 4.77682 4.85055 4.93482 5.01303 5.09719 5.11326 5.13326 5.22065 5.23140 5.32404 5.33070 5.41831 5.44714 5.47977 5.59237 5.63610 5.78587 5.84518 6.19022 6.22688 6.57072 7.21780 7.52922 8.13120 8.69310 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.003308 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.772129 B = 8462.949871 C = 8700.660827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.084 4.084 7 C -0.028 4.028 8 H 0.057 0.943 9 C -0.137 4.137 10 C -0.108 4.108 11 C 0.446 3.554 12 O -0.622 6.622 13 N -0.457 5.457 14 C -0.341 4.341 15 H 0.063 0.937 16 C 0.001 3.999 17 N -0.889 5.889 18 Si 0.979 3.021 19 H -0.278 1.278 20 H -0.272 1.272 21 H -0.265 1.265 22 C 0.094 3.906 23 C -0.153 4.153 24 C -0.129 4.129 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.273 0.727 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.040 0.960 44 H 0.119 0.881 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.565 -16.501 -3.182 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.094 4.094 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.084 4.084 7 C -0.047 4.047 8 H 0.075 0.925 9 C -0.194 4.194 10 C -0.148 4.148 11 C 0.236 3.764 12 O -0.509 6.509 13 N -0.176 5.176 14 C -0.469 4.469 15 H 0.081 0.919 16 C -0.201 4.201 17 N -0.528 5.528 18 Si 0.803 3.197 19 H -0.204 1.204 20 H -0.196 1.196 21 H -0.189 1.189 22 C -0.030 4.030 23 C -0.211 4.211 24 C -0.147 4.147 25 C -0.139 4.139 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.137 0.863 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.629 -16.125 -2.872 20.088 hybrid contribution 0.724 1.264 0.174 1.467 sum -10.905 -14.861 -2.698 18.630 Atomic orbital electron populations 1.21736 0.94289 1.02347 1.01811 1.20568 0.96458 0.91245 1.03625 1.20192 0.98957 0.97359 0.92873 1.21251 0.99569 0.94367 0.98532 1.21130 0.99645 0.95282 0.97509 1.19843 0.99602 0.94801 0.94189 1.19717 0.93413 0.91887 0.99639 0.92479 1.21811 0.97882 0.99774 0.99915 1.21592 0.97007 0.93360 1.02871 1.21197 0.83827 0.90925 0.80465 1.90437 1.61606 1.51708 1.47117 1.43833 1.17625 1.10034 1.46073 1.19355 0.91175 0.84479 1.51890 0.91904 1.26048 0.96613 1.02182 0.95246 1.69987 1.05970 1.35217 1.41578 0.85219 0.77160 0.78098 0.79225 1.20372 1.19634 1.18934 1.21670 0.99714 0.89760 0.91814 1.22096 1.01256 1.01641 0.96107 1.21221 1.00335 0.95649 0.97515 1.21201 0.99822 0.94261 0.98631 0.92927 0.91058 0.93142 0.90382 0.90109 0.84186 0.85478 0.91941 0.92441 0.93297 0.89950 0.88246 0.91725 0.89350 0.91997 0.89767 0.92595 0.94117 0.86328 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.90 71.98 0.71 -1.10 16 2 C -0.08 -1.14 6.07 29.85 0.18 -0.95 16 3 C -0.09 -1.86 5.13 -19.86 -0.10 -1.96 16 4 C -0.12 -2.47 9.70 22.27 0.22 -2.25 16 5 C -0.12 -2.89 8.76 22.27 0.20 -2.69 16 6 C -0.08 -2.40 4.78 -19.86 -0.09 -2.49 16 7 C -0.03 -0.95 2.21 -11.54 -0.03 -0.98 16 8 H 0.06 2.22 7.69 -2.38 -0.02 2.20 16 9 C -0.14 -4.63 8.75 71.98 0.63 -4.00 16 10 C -0.11 -4.06 3.52 29.85 0.11 -3.95 16 11 C 0.45 22.27 7.31 87.66 0.64 22.91 16 12 O -0.62 -35.59 13.79 -3.06 -0.04 -35.63 16 13 N -0.46 -23.79 2.56 -635.51 -1.63 -25.42 16 14 C -0.34 -19.68 8.98 84.04 0.75 -18.92 16 15 H 0.06 3.88 7.70 -2.91 -0.02 3.86 16 16 C 0.00 0.06 4.92 84.93 0.42 0.48 16 17 N -0.89 -48.60 11.33 21.66 0.25 -48.35 16 18 Si 0.98 42.90 29.61 68.60 2.03 44.93 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 C 0.09 4.09 5.43 86.38 0.47 4.56 16 23 C -0.15 -5.32 10.15 71.98 0.73 -4.59 16 24 C -0.13 -3.40 9.67 22.27 0.22 -3.19 16 25 C -0.12 -2.65 9.70 22.27 0.22 -2.43 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.13 2.87 7.16 -2.91 -0.02 2.85 16 33 H 0.06 1.84 7.39 -2.39 -0.02 1.82 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 2.02 5.95 -2.38 -0.01 2.01 16 36 H 0.08 3.01 7.41 -2.39 -0.02 2.99 16 37 H 0.10 3.24 5.97 -2.39 -0.01 3.22 16 38 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.09 4.31 5.34 -2.38 -0.01 4.30 16 40 H 0.06 2.46 6.66 -2.38 -0.02 2.44 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 42 H 0.06 1.78 6.60 -2.39 -0.02 1.76 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.12 3.05 7.95 -2.91 -0.02 3.03 16 45 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -67.84 358.85 6.83 -61.02 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.96 Total: 25.00 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 5.26 Total: -21.55 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -1.38 Total: -73.77 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.04 Total: -35.63 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -67.84 6.83 -61.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078090808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.650 kcal (2) G-P(sol) polarization free energy of solvation -67.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds