Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47182 * 2 1 4 4 C 1.53002 * 109.47612 * 120.00143 * 2 1 3 5 5 C 1.53004 * 109.46852 * 59.99925 * 4 2 1 6 6 C 1.53006 * 109.47153 * 60.00403 * 5 4 2 7 7 C 1.53002 * 109.46586 * 299.99755 * 6 5 4 8 8 H 1.09000 * 109.47300 * 299.99592 * 7 6 5 9 9 N 1.46506 * 109.46816 * 180.02562 * 7 6 5 10 10 C 1.39781 * 120.00317 * 84.99968 * 9 7 6 11 11 C 1.38950 * 120.00117 * 359.72936 * 10 9 7 12 12 C 1.38014 * 119.98884 * 179.72500 * 11 10 9 13 13 C 1.38902 * 120.00703 * 0.54461 * 12 11 10 14 14 O 1.35795 * 119.99405 * 179.70319 * 13 12 11 15 15 C 1.34808 * 116.99839 * 174.48211 * 14 13 12 16 16 H 1.07998 * 120.00133 * 5.05573 * 15 14 13 17 17 C 1.38621 * 119.99897 * 185.05773 * 15 14 13 18 18 N 1.31586 * 120.00285 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99933 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47232 * 60.00066 * 19 17 15 21 21 H 1.48500 * 109.46917 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47262 * 299.99719 * 19 17 15 23 23 C 1.38902 * 120.01167 * 359.72957 * 13 12 11 24 24 C 1.38013 * 120.00264 * 359.97438 * 23 13 12 25 25 C 1.52996 * 109.47286 * 60.00460 * 7 6 5 26 26 H 1.09004 * 109.46994 * 299.99408 * 1 2 3 27 27 H 1.09000 * 109.47220 * 60.00105 * 1 2 3 28 28 H 1.09003 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47660 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47409 * 300.00339 * 3 2 1 31 31 H 1.09001 * 109.46916 * 59.99934 * 3 2 1 32 32 H 1.08993 * 109.46956 * 300.00538 * 4 2 1 33 33 H 1.09000 * 109.47290 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47298 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47099 * 300.00026 * 5 4 2 36 36 H 1.09000 * 109.46968 * 59.99551 * 6 5 4 37 37 H 1.08992 * 109.47000 * 180.02562 * 6 5 4 38 38 H 0.97003 * 119.99513 * 265.00206 * 9 7 6 39 39 H 1.07993 * 120.00773 * 359.97438 * 11 10 9 40 40 H 1.07999 * 119.99729 * 180.25497 * 12 11 10 41 41 H 0.96995 * 120.00243 * 179.97438 * 18 17 15 42 42 H 1.07997 * 119.99736 * 179.97438 * 23 13 12 43 43 H 1.08002 * 119.99612 * 180.02562 * 24 23 13 44 44 H 1.09000 * 109.47409 * 179.97438 * 25 7 6 45 45 H 1.09000 * 109.47660 * 59.99352 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0401 -2.8850 -0.0002 7 6 1.5300 -2.1637 -1.2493 8 1 0.4400 -2.1638 -1.2493 9 7 2.0178 -2.8546 -2.4456 10 6 1.3154 -3.9505 -2.9551 11 6 0.1576 -4.3881 -2.3237 12 6 -0.5388 -5.4667 -2.8303 13 6 -0.0762 -6.1216 -3.9645 14 8 -0.7583 -7.1865 -4.4592 15 6 -0.3218 -7.7052 -5.6244 16 1 0.5817 -7.3268 -6.0791 17 6 -1.0327 -8.7244 -6.2388 18 7 -2.1338 -9.1851 -5.6851 19 14 -0.4274 -9.4437 -7.8530 20 1 0.9289 -10.0172 -7.6617 21 1 -1.3583 -10.5112 -8.2992 22 1 -0.3721 -8.3742 -8.8817 23 6 1.0844 -5.6878 -4.5925 24 6 1.7778 -4.6055 -4.0899 25 6 2.0400 -0.7212 -1.2493 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -0.2075 2.1391 33 1 3.1301 -0.7216 1.2489 34 1 1.8931 -2.6776 2.1393 35 1 0.4401 -2.1638 1.2492 36 1 3.1301 -2.8850 -0.0002 37 1 1.6764 -3.9125 -0.0004 38 1 2.8283 -2.5515 -2.8840 39 1 -0.1995 -3.8820 -1.4392 40 1 -1.4410 -5.8044 -2.3421 41 1 -2.6314 -9.8980 -6.1152 42 1 1.4441 -6.1974 -5.4741 43 1 2.6799 -4.2681 -4.5785 44 1 1.6770 -0.2074 -2.1394 45 1 3.1300 -0.7211 -1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079971649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -22.770168 kcal Electronic energy + Delta-G solvation = -22891.711455 eV Core-core repulsion = 19680.712679 eV Total energy + Delta-G solvation = -3210.998776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.02129 -38.78479 -36.86038 -34.46842 -32.63865 -32.01229 -30.28742 -29.66808 -27.58122 -26.73667 -26.48341 -25.01616 -22.84941 -21.80512 -21.29310 -20.28822 -18.64192 -17.76108 -17.02974 -16.31140 -15.72409 -14.97645 -14.87898 -14.45296 -14.37037 -13.98766 -13.91056 -13.53460 -13.36189 -13.29821 -12.72466 -12.64379 -12.39230 -12.34166 -12.09538 -11.93973 -11.63921 -11.53204 -11.44438 -11.33548 -11.14222 -11.11154 -10.89566 -10.62707 -10.47237 -10.30471 -10.27550 -10.12692 -9.19310 -9.11228 -8.39971 -8.12694 -6.34544 -6.29068 -3.86476 2.24394 2.62269 3.20492 3.21790 3.24153 3.80558 4.08616 4.44045 4.50540 4.64317 4.72172 4.97700 4.99822 5.18192 5.19618 5.23272 5.31302 5.32273 5.44518 5.46090 5.49344 5.51905 5.64113 5.70252 5.74921 5.76904 5.81854 5.85283 5.87144 5.97533 6.07067 6.09130 6.19916 6.23006 6.26507 6.31069 6.42460 6.60246 6.90869 6.96682 7.18607 7.35617 7.49751 7.69296 8.04973 8.15233 8.31475 9.16597 9.91780 10.89510 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039506 B = 0.002882 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.588021 B = 9714.125864 C = 9937.635582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.136 4.136 7 C 0.160 3.840 8 H 0.077 0.923 9 N -0.756 5.756 10 C 0.128 3.872 11 C -0.147 4.147 12 C -0.150 4.150 13 C 0.112 3.888 14 O -0.189 6.189 15 C -0.386 4.386 16 H 0.087 0.913 17 C 0.036 3.964 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.272 1.272 23 C -0.190 4.190 24 C -0.144 4.144 25 C -0.114 4.114 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.388 0.612 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.267 0.733 42 H 0.126 0.874 43 H 0.105 0.895 44 H 0.066 0.934 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.632 18.187 11.448 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.175 4.175 7 C 0.053 3.947 8 H 0.095 0.905 9 N -0.390 5.390 10 C 0.030 3.970 11 C -0.169 4.169 12 C -0.170 4.170 13 C 0.060 3.940 14 O -0.094 6.094 15 C -0.463 4.463 16 H 0.104 0.896 17 C -0.167 4.167 18 N -0.507 5.507 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.197 1.197 23 C -0.210 4.210 24 C -0.166 4.166 25 C -0.152 4.152 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.221 0.779 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.077 0.923 42 H 0.144 0.856 43 H 0.123 0.877 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.135 17.909 11.605 22.838 hybrid contribution 0.747 -0.260 -1.038 1.305 sum 8.882 17.649 10.568 22.406 Atomic orbital electron populations 1.22008 0.94497 1.02387 1.01597 1.20479 0.95853 0.94893 0.94914 1.21860 1.00831 0.95417 1.01694 1.21611 1.00430 0.95570 0.96925 1.21571 1.01146 0.95289 0.97857 1.22074 1.00945 1.00069 0.94391 1.20739 0.98886 0.90255 0.84781 0.90546 1.44311 1.29838 1.33879 1.30960 1.17395 0.93914 0.90617 0.95119 1.20197 0.96169 0.99223 1.01293 1.20030 1.01575 0.97716 0.97696 1.19233 0.91763 0.89162 0.93847 1.83984 1.50700 1.37970 1.36766 1.21181 1.09615 1.18010 0.97530 0.89551 1.25204 0.95593 0.96672 0.99211 1.70039 1.15165 1.26658 1.38820 0.85846 0.78472 0.78746 0.80703 1.19704 1.20438 1.19705 1.20985 0.97408 0.99583 1.02984 1.20232 1.00885 0.98346 0.97168 1.21831 1.00682 0.95028 0.97625 0.92792 0.92657 0.91788 0.92791 0.92662 0.92688 0.92127 0.92110 0.92097 0.91590 0.92181 0.91399 0.77866 0.87143 0.86614 0.92284 0.85592 0.87726 0.91537 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 7.78 37.16 0.29 -0.94 16 2 C -0.06 -0.49 0.77 -154.51 -0.12 -0.61 16 3 C -0.14 -0.99 8.47 37.16 0.31 -0.67 16 4 C -0.11 -0.85 4.73 -26.73 -0.13 -0.98 16 5 C -0.12 -1.08 5.65 -26.73 -0.15 -1.23 16 6 C -0.14 -1.48 5.43 -26.73 -0.15 -1.63 16 7 C 0.16 1.81 1.87 -67.93 -0.13 1.68 16 8 H 0.08 0.95 4.78 -51.93 -0.25 0.70 16 9 N -0.76 -10.22 5.25 -52.12 -0.27 -10.50 16 10 C 0.13 2.22 6.64 -83.71 -0.56 1.67 16 11 C -0.15 -2.70 8.83 -39.40 -0.35 -3.04 16 12 C -0.15 -3.26 9.98 -39.42 -0.39 -3.66 16 13 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 14 O -0.19 -5.56 9.76 -0.03 0.00 -5.56 16 15 C -0.39 -11.13 9.48 30.87 0.29 -10.84 16 16 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 17 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 18 N -0.87 -26.30 13.67 55.48 0.76 -25.54 16 19 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C -0.19 -4.23 9.16 -39.42 -0.36 -4.59 16 24 C -0.14 -2.71 9.89 -39.40 -0.39 -3.10 16 25 C -0.11 -1.05 4.20 -26.73 -0.11 -1.16 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.87 7.67 -51.93 -0.40 0.48 16 38 H 0.39 4.66 8.62 -40.82 -0.35 4.31 16 39 H 0.11 1.76 6.08 -52.49 -0.32 1.44 16 40 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.13 2.82 5.63 -52.49 -0.30 2.52 16 43 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -30.97 347.77 -8.69 -39.66 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.10 Total: 6.21 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -2.29 Total: -25.64 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.48 Total: -36.04 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: 0.00 Total: -5.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.97 -8.69 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079971649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.889 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds