Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47182 * 2 1 4 4 C 1.53002 * 109.47612 * 120.00143 * 2 1 3 5 5 C 1.53004 * 109.46852 * 59.99925 * 4 2 1 6 6 C 1.53006 * 109.47153 * 60.00403 * 5 4 2 7 7 C 1.53002 * 109.46586 * 299.99755 * 6 5 4 8 8 H 1.09000 * 109.47300 * 299.99592 * 7 6 5 9 9 N 1.46506 * 109.46816 * 180.02562 * 7 6 5 10 10 C 1.39781 * 120.00317 * 84.99968 * 9 7 6 11 11 C 1.38950 * 120.00117 * 359.72936 * 10 9 7 12 12 C 1.38014 * 119.98884 * 179.72500 * 11 10 9 13 13 C 1.38902 * 120.00703 * 0.54461 * 12 11 10 14 14 O 1.35795 * 119.99405 * 179.70319 * 13 12 11 15 15 C 1.34808 * 116.99839 * 174.48211 * 14 13 12 16 16 H 1.07998 * 120.00133 * 5.05573 * 15 14 13 17 17 C 1.38621 * 119.99897 * 185.05773 * 15 14 13 18 18 N 1.31586 * 120.00285 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99933 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47232 * 60.00066 * 19 17 15 21 21 H 1.48500 * 109.46917 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47262 * 299.99719 * 19 17 15 23 23 C 1.38902 * 120.01167 * 359.72957 * 13 12 11 24 24 C 1.38013 * 120.00264 * 359.97438 * 23 13 12 25 25 C 1.52996 * 109.47286 * 60.00460 * 7 6 5 26 26 H 1.09004 * 109.46994 * 299.99408 * 1 2 3 27 27 H 1.09000 * 109.47220 * 60.00105 * 1 2 3 28 28 H 1.09003 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47660 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47409 * 300.00339 * 3 2 1 31 31 H 1.09001 * 109.46916 * 59.99934 * 3 2 1 32 32 H 1.08993 * 109.46956 * 300.00538 * 4 2 1 33 33 H 1.09000 * 109.47290 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47298 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47099 * 300.00026 * 5 4 2 36 36 H 1.09000 * 109.46968 * 59.99551 * 6 5 4 37 37 H 1.08992 * 109.47000 * 180.02562 * 6 5 4 38 38 H 0.97003 * 119.99513 * 265.00206 * 9 7 6 39 39 H 1.07993 * 120.00773 * 359.97438 * 11 10 9 40 40 H 1.07999 * 119.99729 * 180.25497 * 12 11 10 41 41 H 0.96995 * 120.00243 * 179.97438 * 18 17 15 42 42 H 1.07997 * 119.99736 * 179.97438 * 23 13 12 43 43 H 1.08002 * 119.99612 * 180.02562 * 24 23 13 44 44 H 1.09000 * 109.47409 * 179.97438 * 25 7 6 45 45 H 1.09000 * 109.47660 * 59.99352 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0401 -2.8850 -0.0002 7 6 1.5300 -2.1637 -1.2493 8 1 0.4400 -2.1638 -1.2493 9 7 2.0178 -2.8546 -2.4456 10 6 1.3154 -3.9505 -2.9551 11 6 0.1576 -4.3881 -2.3237 12 6 -0.5388 -5.4667 -2.8303 13 6 -0.0762 -6.1216 -3.9645 14 8 -0.7583 -7.1865 -4.4592 15 6 -0.3218 -7.7052 -5.6244 16 1 0.5817 -7.3268 -6.0791 17 6 -1.0327 -8.7244 -6.2388 18 7 -2.1338 -9.1851 -5.6851 19 14 -0.4274 -9.4437 -7.8530 20 1 0.9289 -10.0172 -7.6617 21 1 -1.3583 -10.5112 -8.2992 22 1 -0.3721 -8.3742 -8.8817 23 6 1.0844 -5.6878 -4.5925 24 6 1.7778 -4.6055 -4.0899 25 6 2.0400 -0.7212 -1.2493 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -0.2075 2.1391 33 1 3.1301 -0.7216 1.2489 34 1 1.8931 -2.6776 2.1393 35 1 0.4401 -2.1638 1.2492 36 1 3.1301 -2.8850 -0.0002 37 1 1.6764 -3.9125 -0.0004 38 1 2.8283 -2.5515 -2.8840 39 1 -0.1995 -3.8820 -1.4392 40 1 -1.4410 -5.8044 -2.3421 41 1 -2.6314 -9.8980 -6.1152 42 1 1.4441 -6.1974 -5.4741 43 1 2.6799 -4.2681 -4.5785 44 1 1.6770 -0.2074 -2.1394 45 1 3.1300 -0.7211 -1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079971649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -40.273669 kcal Electronic energy + Delta-G solvation = -22892.470464 eV Core-core repulsion = 19680.712679 eV Total energy + Delta-G solvation = -3211.757785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04468 -40.32554 -38.47371 -35.75063 -34.14085 -33.39658 -31.84333 -30.89466 -28.35261 -28.11241 -27.21213 -26.93601 -24.12346 -23.01647 -22.56861 -21.57401 -19.68214 -19.37770 -18.78957 -17.68083 -16.93040 -16.27829 -16.01698 -15.64389 -15.54905 -15.38429 -15.30945 -14.79215 -14.65143 -14.37095 -14.16944 -14.06264 -13.60732 -13.42207 -13.30182 -12.95338 -12.86565 -12.73835 -12.68120 -12.44263 -12.31887 -12.19543 -12.11068 -11.90752 -11.81362 -11.26629 -11.13476 -11.06157 -10.91518 -10.80115 -10.12587 -9.76853 -8.38687 -7.91047 -6.02398 0.59002 0.94665 1.36550 1.48006 1.52825 2.23196 2.64453 2.91976 3.26118 3.67232 3.71980 3.80947 3.94446 4.12741 4.16784 4.22340 4.24550 4.42250 4.47585 4.51573 4.57180 4.60714 4.70600 4.76888 4.85125 4.86083 4.96298 5.00788 5.10185 5.11985 5.13290 5.16947 5.18868 5.23593 5.29640 5.34540 5.40699 5.47761 5.51727 5.53892 5.56349 5.67450 5.79320 6.01006 6.11937 6.65521 7.06000 7.09464 7.94220 8.85766 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039506 B = 0.002882 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.588021 B = 9714.125864 C = 9937.635582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.156 3.844 8 H 0.068 0.932 9 N -0.742 5.742 10 C 0.156 3.844 11 C -0.146 4.146 12 C -0.156 4.156 13 C 0.062 3.938 14 O -0.243 6.243 15 C -0.407 4.407 16 H 0.098 0.902 17 C -0.029 4.029 18 N -0.928 5.928 19 Si 1.017 2.983 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.193 4.193 24 C -0.147 4.147 25 C -0.107 4.107 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.401 0.599 39 H 0.138 0.862 40 H 0.111 0.889 41 H 0.270 0.730 42 H 0.119 0.881 43 H 0.139 0.861 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.003 20.888 11.979 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.059 4.059 3 C -0.196 4.196 4 C -0.142 4.142 5 C -0.156 4.156 6 C -0.171 4.171 7 C 0.050 3.950 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.055 3.945 11 C -0.168 4.168 12 C -0.176 4.176 13 C 0.012 3.988 14 O -0.151 6.151 15 C -0.483 4.483 16 H 0.115 0.885 17 C -0.225 4.225 18 N -0.567 5.567 19 Si 0.836 3.164 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.183 1.183 23 C -0.213 4.213 24 C -0.169 4.169 25 C -0.145 4.145 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.236 0.764 39 H 0.155 0.845 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.157 0.843 44 H 0.083 0.917 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.561 20.694 12.182 26.233 hybrid contribution 0.132 -0.791 -0.961 1.252 sum 10.693 19.903 11.221 25.227 Atomic orbital electron populations 1.22021 0.94818 1.01839 1.01960 1.20469 0.95554 0.95534 0.94311 1.21832 1.01168 0.94469 1.02090 1.21594 1.00705 0.94603 0.97270 1.21554 1.01078 0.96020 0.96977 1.22006 1.01079 0.98939 0.95049 1.20926 0.98542 0.91589 0.83905 0.91375 1.44443 1.29604 1.32207 1.31258 1.17519 0.92883 0.90362 0.93707 1.20416 0.96195 0.98169 1.02001 1.20225 1.01881 0.98449 0.97002 1.19714 0.93411 0.89926 0.95740 1.83932 1.52847 1.40535 1.37774 1.21719 1.10249 1.18454 0.97926 0.88474 1.26532 0.95666 0.96861 1.03406 1.70200 1.17230 1.28059 1.41255 0.84680 0.78341 0.78065 0.75312 1.18242 1.19771 1.18287 1.21056 0.96932 1.00538 1.02733 1.20500 1.01653 0.97222 0.97572 1.21784 1.01221 0.93182 0.98321 0.91864 0.92967 0.92762 0.92242 0.92716 0.91940 0.91017 0.91606 0.91507 0.91744 0.91829 0.93595 0.76363 0.84464 0.87070 0.92146 0.86337 0.84325 0.91711 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 7.78 71.98 0.56 -1.54 16 2 C -0.06 -0.75 0.77 -52.18 -0.04 -0.79 16 3 C -0.14 -1.47 8.47 71.98 0.61 -0.86 16 4 C -0.10 -1.29 4.73 30.60 0.14 -1.14 16 5 C -0.12 -1.81 5.65 30.60 0.17 -1.64 16 6 C -0.13 -2.54 5.43 30.60 0.17 -2.38 16 7 C 0.16 3.08 1.87 44.99 0.08 3.17 16 8 H 0.07 1.52 4.78 -2.39 -0.01 1.51 16 9 N -0.74 -17.65 5.25 -318.79 -1.67 -19.32 16 10 C 0.16 5.11 6.64 38.21 0.25 5.36 16 11 C -0.15 -5.21 8.83 22.39 0.20 -5.01 16 12 C -0.16 -6.97 9.98 22.38 0.22 -6.75 16 13 C 0.06 3.20 6.65 22.59 0.15 3.35 16 14 O -0.24 -15.21 9.76 -23.02 -0.22 -15.44 16 15 C -0.41 -24.57 9.48 67.91 0.64 -23.93 16 16 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 17 C -0.03 -1.68 5.49 84.82 0.47 -1.22 16 18 N -0.93 -58.95 13.67 21.61 0.30 -58.66 16 19 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 C -0.19 -8.72 9.16 22.38 0.20 -8.51 16 24 C -0.15 -5.26 9.89 22.39 0.22 -5.04 16 25 C -0.11 -1.62 4.20 30.59 0.13 -1.49 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.87 4.81 -2.39 -0.01 0.85 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.10 7.67 -2.39 -0.02 1.08 16 38 H 0.40 7.99 8.62 -92.71 -0.80 7.19 16 39 H 0.14 4.13 6.08 -2.91 -0.02 4.12 16 40 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 42 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 43 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.53 347.77 4.80 -66.73 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.18 Total: 28.73 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 4.19 Total: -48.42 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.38 Total: -77.98 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.22 Total: -15.44 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.53 4.80 -66.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079971649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.459 kcal (2) G-P(sol) polarization free energy of solvation -71.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds