Wall clock time and date at job start Tue Mar 31 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47688 * 2 1 4 4 C 1.53002 * 109.46856 * 120.00448 * 2 1 3 5 5 C 1.53001 * 109.46856 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47231 * 299.99418 * 5 4 2 7 7 C 1.53005 * 109.46911 * 60.00174 * 6 5 4 8 8 H 1.08997 * 109.47076 * 59.99887 * 7 6 5 9 9 N 1.46495 * 109.47064 * 180.02562 * 7 6 5 10 10 C 1.39779 * 120.00286 * 275.00074 * 9 7 6 11 11 C 1.38949 * 120.00746 * 179.97438 * 10 9 7 12 12 C 1.38018 * 119.99149 * 179.97438 * 11 10 9 13 13 C 1.38898 * 120.00499 * 0.02562 * 12 11 10 14 14 O 1.35795 * 119.98946 * 179.97438 * 13 12 11 15 15 C 1.34811 * 117.00069 * 5.54594 * 14 13 12 16 16 H 1.07996 * 120.00270 * 354.93691 * 15 14 13 17 17 C 1.38620 * 119.99738 * 174.66575 * 15 14 13 18 18 N 1.31580 * 120.00512 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47272 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47357 * 119.99535 * 19 17 15 22 22 H 1.48491 * 109.47463 * 239.99816 * 19 17 15 23 23 C 1.38893 * 120.01548 * 0.25679 * 13 12 11 24 24 C 1.38015 * 120.00352 * 359.48471 * 23 13 12 25 25 C 1.52996 * 109.46994 * 300.00284 * 7 6 5 26 26 H 1.09000 * 109.46882 * 300.00150 * 1 2 3 27 27 H 1.08998 * 109.46858 * 59.99744 * 1 2 3 28 28 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47520 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47180 * 300.00058 * 3 2 1 31 31 H 1.09008 * 109.46817 * 59.99831 * 3 2 1 32 32 H 1.08997 * 109.47437 * 59.99947 * 4 2 1 33 33 H 1.09000 * 109.46887 * 299.99399 * 4 2 1 34 34 H 1.09007 * 109.46939 * 180.02562 * 5 4 2 35 35 H 1.08994 * 109.47856 * 59.99666 * 5 4 2 36 36 H 1.09007 * 109.47004 * 300.00638 * 6 5 4 37 37 H 1.09002 * 109.47336 * 180.02562 * 6 5 4 38 38 H 0.97006 * 120.00159 * 95.00057 * 9 7 6 39 39 H 1.07993 * 120.00556 * 359.96352 * 11 10 9 40 40 H 1.07996 * 119.99108 * 180.02562 * 12 11 10 41 41 H 0.97000 * 120.00420 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.99793 * 179.72248 * 23 13 12 43 43 H 1.08007 * 120.00114 * 180.26188 * 24 23 13 44 44 H 1.09001 * 109.47067 * 180.02562 * 25 7 6 45 45 H 1.09007 * 109.47392 * 299.99825 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4436 -0.0003 7 6 3.5695 -0.7223 -1.2496 8 1 3.9332 0.3052 -1.2498 9 7 4.0568 -1.4136 -2.4457 10 6 5.3241 -1.1183 -2.9561 11 6 5.7867 -1.7743 -4.0903 12 6 7.0379 -1.4821 -4.5943 13 6 7.8348 -0.5328 -3.9675 14 8 9.0660 -0.2459 -4.4633 15 6 9.4083 -0.8314 -5.6284 16 1 8.7495 -1.5569 -6.0822 17 6 10.6032 -0.4979 -6.2469 18 7 11.4032 0.3904 -5.6971 19 14 11.0779 -1.3096 -7.8609 20 1 10.0158 -2.2653 -8.2655 21 1 11.2352 -0.2705 -8.9102 22 1 12.3602 -2.0386 -7.6901 23 6 7.3751 0.1189 -2.8303 24 6 6.1219 -0.1690 -2.3290 25 6 2.0395 -0.7217 -1.2492 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6769 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7490 1.2492 33 1 1.6767 -0.2075 2.1392 34 1 3.9333 -1.2363 2.1387 35 1 3.9338 0.3055 1.2487 36 1 3.7156 -2.4712 -0.0001 37 1 5.1695 -1.4444 -0.0004 38 1 3.5000 -2.0763 -2.8836 39 1 5.1673 -2.5128 -4.5773 40 1 7.3972 -1.9917 -5.4761 41 1 12.2392 0.6240 -6.1300 42 1 7.9968 0.8537 -2.3406 43 1 5.7627 0.3408 -1.4472 44 1 1.6762 -0.2082 -2.1394 45 1 1.6757 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079971654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:05 Heat of formation + Delta-G solvation = -22.916626 kcal Electronic energy + Delta-G solvation = -22892.044493 eV Core-core repulsion = 19681.039366 eV Total energy + Delta-G solvation = -3211.005127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02162 -38.78611 -36.86150 -34.46997 -32.63989 -32.01413 -30.28820 -29.66840 -27.58243 -26.73739 -26.48368 -25.01987 -22.85065 -21.80666 -21.29388 -20.28867 -18.64288 -17.76317 -17.03208 -16.31325 -15.72716 -14.97830 -14.87978 -14.45269 -14.35720 -13.99361 -13.91121 -13.53360 -13.36178 -13.29946 -12.72322 -12.65148 -12.39706 -12.34507 -12.09587 -11.94102 -11.64013 -11.53224 -11.44528 -11.33655 -11.15178 -11.11418 -10.92559 -10.61072 -10.43059 -10.30888 -10.27574 -10.12684 -9.18674 -9.12048 -8.40370 -8.12776 -6.34640 -6.29507 -3.86777 2.24278 2.61981 3.19738 3.21022 3.26209 3.80528 4.08274 4.43980 4.50471 4.64256 4.72095 4.97650 4.99743 5.18131 5.19493 5.22974 5.31216 5.32217 5.44469 5.46011 5.49293 5.51882 5.64066 5.70220 5.74864 5.76861 5.81767 5.85224 5.87077 5.97478 6.07014 6.09084 6.19886 6.22930 6.26517 6.30977 6.42404 6.60158 6.90831 6.96696 7.18485 7.36197 7.49689 7.69207 8.04872 8.15038 8.31337 9.16425 9.91698 10.89203 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039495 B = 0.002882 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.787203 B = 9714.210604 C = 9937.325063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.136 4.136 7 C 0.160 3.840 8 H 0.077 0.923 9 N -0.756 5.756 10 C 0.128 3.872 11 C -0.144 4.144 12 C -0.190 4.190 13 C 0.112 3.888 14 O -0.190 6.190 15 C -0.385 4.385 16 H 0.088 0.912 17 C 0.035 3.965 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.114 4.114 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.388 0.612 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.266 0.734 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.054 -2.079 11.485 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.175 4.175 7 C 0.053 3.947 8 H 0.095 0.905 9 N -0.390 5.390 10 C 0.030 3.970 11 C -0.166 4.166 12 C -0.210 4.210 13 C 0.060 3.940 14 O -0.095 6.095 15 C -0.462 4.462 16 H 0.106 0.894 17 C -0.167 4.167 18 N -0.507 5.507 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.170 4.170 24 C -0.169 4.169 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.221 0.779 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.076 0.924 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.636 -1.709 11.641 22.891 hybrid contribution 0.006 -0.777 -1.037 1.296 sum -19.630 -2.486 10.604 22.450 Atomic orbital electron populations 1.21860 0.94638 1.01611 1.01694 1.20480 0.95105 0.95640 0.94914 1.22006 1.01787 0.95093 1.01599 1.21611 0.95792 1.00209 0.96925 1.21570 0.95328 1.01100 0.97859 1.22076 1.01418 0.99592 0.94392 1.20736 0.92689 0.96450 0.84781 0.90543 1.44309 1.16281 1.47432 1.30961 1.17398 0.86387 0.98089 0.95163 1.20234 0.96859 1.02390 0.97153 1.20989 0.95052 1.01916 1.02993 1.19230 0.86682 0.94286 0.93794 1.83986 1.25266 1.63440 1.36794 1.21278 1.05125 1.22382 0.97424 0.89442 1.25210 0.95480 0.96838 0.99216 1.70058 1.11081 1.30790 1.38725 0.85704 0.78780 0.78711 0.80542 1.19281 1.20335 1.20342 1.20028 0.96235 1.03088 0.97654 1.20198 0.94548 1.00711 1.01433 1.21834 0.95067 1.00647 0.97626 0.92687 0.92662 0.92790 0.91789 0.92659 0.92791 0.92113 0.92127 0.92097 0.91584 0.92188 0.91402 0.77860 0.87726 0.85581 0.92392 0.86611 0.87142 0.91537 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.47 37.16 0.31 -0.67 16 2 C -0.06 -0.49 0.77 -154.51 -0.12 -0.61 16 3 C -0.15 -1.22 7.78 37.16 0.29 -0.94 16 4 C -0.11 -0.85 4.73 -26.73 -0.13 -0.98 16 5 C -0.12 -1.08 5.65 -26.73 -0.15 -1.23 16 6 C -0.14 -1.48 5.44 -26.73 -0.15 -1.63 16 7 C 0.16 1.81 1.87 -67.93 -0.13 1.68 16 8 H 0.08 0.95 4.77 -51.93 -0.25 0.70 16 9 N -0.76 -10.22 5.25 -52.12 -0.27 -10.49 16 10 C 0.13 2.22 6.64 -83.71 -0.56 1.67 16 11 C -0.14 -2.71 9.89 -39.40 -0.39 -3.10 16 12 C -0.19 -4.23 9.16 -39.42 -0.36 -4.59 16 13 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 14 O -0.19 -5.58 9.76 -0.04 0.00 -5.58 16 15 C -0.39 -11.09 9.48 30.87 0.29 -10.80 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 17 C 0.04 1.00 5.49 -17.52 -0.10 0.90 16 18 N -0.87 -26.28 13.67 55.48 0.76 -25.52 16 19 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.15 -3.26 9.98 -39.42 -0.39 -3.65 16 24 C -0.15 -2.70 8.84 -39.40 -0.35 -3.04 16 25 C -0.11 -1.05 4.20 -26.73 -0.11 -1.16 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 35 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.87 7.71 -51.93 -0.40 0.47 16 38 H 0.39 4.66 8.61 -40.82 -0.35 4.31 16 39 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.11 1.76 6.11 -52.48 -0.32 1.44 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -30.99 347.86 -8.69 -39.68 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.10 Total: 6.14 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -2.29 Total: -25.61 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.48 Total: -36.01 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.99 -8.69 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079971654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.763 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds