Wall clock time and date at job start Tue Mar 31 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47688 * 2 1 4 4 C 1.53002 * 109.46856 * 120.00448 * 2 1 3 5 5 C 1.53001 * 109.46856 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47231 * 299.99418 * 5 4 2 7 7 C 1.53005 * 109.46911 * 60.00174 * 6 5 4 8 8 H 1.08997 * 109.47076 * 59.99887 * 7 6 5 9 9 N 1.46495 * 109.47064 * 180.02562 * 7 6 5 10 10 C 1.39779 * 120.00286 * 275.00074 * 9 7 6 11 11 C 1.38949 * 120.00746 * 179.97438 * 10 9 7 12 12 C 1.38018 * 119.99149 * 179.97438 * 11 10 9 13 13 C 1.38898 * 120.00499 * 0.02562 * 12 11 10 14 14 O 1.35795 * 119.98946 * 179.97438 * 13 12 11 15 15 C 1.34811 * 117.00069 * 5.54594 * 14 13 12 16 16 H 1.07996 * 120.00270 * 354.93691 * 15 14 13 17 17 C 1.38620 * 119.99738 * 174.66575 * 15 14 13 18 18 N 1.31580 * 120.00512 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47272 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47357 * 119.99535 * 19 17 15 22 22 H 1.48491 * 109.47463 * 239.99816 * 19 17 15 23 23 C 1.38893 * 120.01548 * 0.25679 * 13 12 11 24 24 C 1.38015 * 120.00352 * 359.48471 * 23 13 12 25 25 C 1.52996 * 109.46994 * 300.00284 * 7 6 5 26 26 H 1.09000 * 109.46882 * 300.00150 * 1 2 3 27 27 H 1.08998 * 109.46858 * 59.99744 * 1 2 3 28 28 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47520 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47180 * 300.00058 * 3 2 1 31 31 H 1.09008 * 109.46817 * 59.99831 * 3 2 1 32 32 H 1.08997 * 109.47437 * 59.99947 * 4 2 1 33 33 H 1.09000 * 109.46887 * 299.99399 * 4 2 1 34 34 H 1.09007 * 109.46939 * 180.02562 * 5 4 2 35 35 H 1.08994 * 109.47856 * 59.99666 * 5 4 2 36 36 H 1.09007 * 109.47004 * 300.00638 * 6 5 4 37 37 H 1.09002 * 109.47336 * 180.02562 * 6 5 4 38 38 H 0.97006 * 120.00159 * 95.00057 * 9 7 6 39 39 H 1.07993 * 120.00556 * 359.96352 * 11 10 9 40 40 H 1.07996 * 119.99108 * 180.02562 * 12 11 10 41 41 H 0.97000 * 120.00420 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.99793 * 179.72248 * 23 13 12 43 43 H 1.08007 * 120.00114 * 180.26188 * 24 23 13 44 44 H 1.09001 * 109.47067 * 180.02562 * 25 7 6 45 45 H 1.09007 * 109.47392 * 299.99825 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4436 -0.0003 7 6 3.5695 -0.7223 -1.2496 8 1 3.9332 0.3052 -1.2498 9 7 4.0568 -1.4136 -2.4457 10 6 5.3241 -1.1183 -2.9561 11 6 5.7867 -1.7743 -4.0903 12 6 7.0379 -1.4821 -4.5943 13 6 7.8348 -0.5328 -3.9675 14 8 9.0660 -0.2459 -4.4633 15 6 9.4083 -0.8314 -5.6284 16 1 8.7495 -1.5569 -6.0822 17 6 10.6032 -0.4979 -6.2469 18 7 11.4032 0.3904 -5.6971 19 14 11.0779 -1.3096 -7.8609 20 1 10.0158 -2.2653 -8.2655 21 1 11.2352 -0.2705 -8.9102 22 1 12.3602 -2.0386 -7.6901 23 6 7.3751 0.1189 -2.8303 24 6 6.1219 -0.1690 -2.3290 25 6 2.0395 -0.7217 -1.2492 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6769 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7490 1.2492 33 1 1.6767 -0.2075 2.1392 34 1 3.9333 -1.2363 2.1387 35 1 3.9338 0.3055 1.2487 36 1 3.7156 -2.4712 -0.0001 37 1 5.1695 -1.4444 -0.0004 38 1 3.5000 -2.0763 -2.8836 39 1 5.1673 -2.5128 -4.5773 40 1 7.3972 -1.9917 -5.4761 41 1 12.2392 0.6240 -6.1300 42 1 7.9968 0.8537 -2.3406 43 1 5.7627 0.3408 -1.4472 44 1 1.6762 -0.2082 -2.1394 45 1 1.6757 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079971654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:04 Heat of formation + Delta-G solvation = -40.424763 kcal Electronic energy + Delta-G solvation = -22892.803703 eV Core-core repulsion = 19681.039366 eV Total energy + Delta-G solvation = -3211.764337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04496 -40.32646 -38.47463 -35.75189 -34.14249 -33.39693 -31.84389 -30.89495 -28.35341 -28.11328 -27.21132 -26.93989 -24.12472 -23.01713 -22.56917 -21.57411 -19.68395 -19.37838 -18.79437 -17.68165 -16.93437 -16.27197 -16.01145 -15.64603 -15.55027 -15.38406 -15.31108 -14.79009 -14.65307 -14.38213 -14.17104 -14.06445 -13.60604 -13.42160 -13.30696 -12.95667 -12.86738 -12.74380 -12.72406 -12.43633 -12.31308 -12.16570 -12.07680 -11.91202 -11.81404 -11.26573 -11.14049 -11.05806 -10.91474 -10.81334 -10.12728 -9.76928 -8.39127 -7.91069 -6.02640 0.58909 0.94394 1.36686 1.45674 1.54933 2.22714 2.64463 2.91827 3.25911 3.67101 3.71944 3.80968 3.94448 4.12686 4.16673 4.22384 4.24539 4.42252 4.47591 4.51550 4.57183 4.60712 4.70575 4.76892 4.85157 4.86096 4.96337 5.00801 5.10194 5.12036 5.13458 5.16910 5.18842 5.23622 5.29613 5.34594 5.40702 5.47773 5.51737 5.53916 5.56304 5.67464 5.79292 6.00960 6.12026 6.65499 7.05876 7.09367 7.94149 8.85764 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039495 B = 0.002882 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.787203 B = 9714.210604 C = 9937.325063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.149 4.149 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.156 3.844 8 H 0.068 0.932 9 N -0.742 5.742 10 C 0.156 3.844 11 C -0.147 4.147 12 C -0.193 4.193 13 C 0.062 3.938 14 O -0.243 6.243 15 C -0.405 4.405 16 H 0.098 0.902 17 C -0.029 4.029 18 N -0.928 5.928 19 Si 1.017 2.983 20 H -0.252 1.252 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.156 4.156 24 C -0.146 4.146 25 C -0.107 4.107 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.401 0.599 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.269 0.731 42 H 0.111 0.889 43 H 0.138 0.862 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.388 -3.396 12.033 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.059 4.059 3 C -0.206 4.206 4 C -0.142 4.142 5 C -0.156 4.156 6 C -0.171 4.171 7 C 0.050 3.950 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.055 3.945 11 C -0.170 4.170 12 C -0.212 4.212 13 C 0.012 3.988 14 O -0.151 6.151 15 C -0.481 4.481 16 H 0.115 0.885 17 C -0.225 4.225 18 N -0.568 5.568 19 Si 0.837 3.163 20 H -0.175 1.175 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.175 4.175 24 C -0.168 4.168 25 C -0.145 4.145 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.236 0.764 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.155 0.845 44 H 0.083 0.917 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.068 -3.050 12.234 26.289 hybrid contribution 0.715 -0.378 -0.965 1.260 sum -22.352 -3.429 11.269 25.266 Atomic orbital electron populations 1.21833 0.93531 1.02108 1.02090 1.20470 0.95917 0.95171 0.94310 1.22019 1.01156 0.95497 1.01962 1.21594 0.94655 1.00655 0.97271 1.21553 0.96321 1.00770 0.96977 1.22008 0.99999 1.00015 0.95052 1.20924 0.94407 0.95725 0.83903 0.91361 1.44442 1.14623 1.47185 1.31257 1.17520 0.87332 0.95872 0.93736 1.20500 0.95843 1.03049 0.97561 1.21052 0.96180 1.01278 1.02733 1.19708 0.86598 0.96783 0.95678 1.83933 1.27938 1.65472 1.37795 1.21791 1.05786 1.22748 0.97804 0.88469 1.26531 0.95086 0.97514 1.03395 1.70211 1.12004 1.33361 1.41178 0.84547 0.78807 0.77915 0.75040 1.17525 1.19499 1.19488 1.20222 0.97521 1.02844 0.96942 1.20418 0.93268 1.00962 1.02135 1.21786 0.92933 1.01475 0.98322 0.91940 0.92715 0.92244 0.92758 0.92967 0.91864 0.91614 0.91016 0.91509 0.91734 0.91840 0.93596 0.76359 0.84343 0.86386 0.92159 0.87057 0.84453 0.91709 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.47 71.98 0.61 -0.86 16 2 C -0.06 -0.74 0.77 -52.18 -0.04 -0.78 16 3 C -0.15 -2.10 7.78 71.98 0.56 -1.54 16 4 C -0.10 -1.29 4.73 30.60 0.14 -1.14 16 5 C -0.12 -1.80 5.65 30.60 0.17 -1.63 16 6 C -0.13 -2.54 5.44 30.60 0.17 -2.38 16 7 C 0.16 3.08 1.87 44.99 0.08 3.16 16 8 H 0.07 1.52 4.77 -2.39 -0.01 1.51 16 9 N -0.74 -17.64 5.25 -318.81 -1.67 -19.31 16 10 C 0.16 5.11 6.64 38.22 0.25 5.36 16 11 C -0.15 -5.27 9.89 22.39 0.22 -5.05 16 12 C -0.19 -8.72 9.16 22.38 0.20 -8.51 16 13 C 0.06 3.21 6.65 22.58 0.15 3.36 16 14 O -0.24 -15.23 9.76 -23.05 -0.22 -15.46 16 15 C -0.40 -24.43 9.48 67.91 0.64 -23.78 16 16 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 17 C -0.03 -1.73 5.49 84.82 0.47 -1.26 16 18 N -0.93 -58.91 13.67 21.61 0.30 -58.61 16 19 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 20 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C -0.16 -6.95 9.98 22.37 0.22 -6.73 16 24 C -0.15 -5.20 8.84 22.39 0.20 -5.00 16 25 C -0.11 -1.62 4.20 30.59 0.13 -1.49 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.86 4.81 -2.39 -0.01 0.85 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.05 1.09 7.71 -2.39 -0.02 1.08 16 38 H 0.40 7.99 8.61 -92.70 -0.80 7.19 16 39 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.12 5.42 5.63 -2.91 -0.02 5.41 16 41 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.14 4.13 6.11 -2.91 -0.02 4.11 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -71.52 347.86 4.80 -66.72 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.19 Total: 28.49 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 4.19 Total: -48.27 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -1.38 Total: -77.93 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.22 Total: -15.46 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -71.52 4.80 -66.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079971654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.298 kcal (2) G-P(sol) polarization free energy of solvation -71.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds