Wall clock time and date at job start Tue Mar 31 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46668 * 2 1 4 4 C 1.53000 * 109.47120 * 240.00038 * 2 1 3 5 5 C 1.52997 * 109.46809 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47374 * 60.00075 * 5 4 2 7 7 C 1.53009 * 109.46962 * 299.99745 * 6 5 4 8 8 H 1.09001 * 109.47027 * 300.00391 * 7 6 5 9 9 N 1.46497 * 109.47187 * 179.97438 * 7 6 5 10 10 C 1.39675 * 119.99688 * 85.00308 * 9 7 6 11 11 C 1.39004 * 120.04130 * 359.72209 * 10 9 7 12 12 C 1.38146 * 120.05961 * 179.69779 * 11 10 9 13 13 C 1.38170 * 120.14606 * 0.60634 * 12 11 10 14 14 C 1.38917 * 120.07498 * 359.67287 * 13 12 11 15 15 O 1.35751 * 120.02878 * 180.02562 * 14 13 12 16 16 C 1.34831 * 116.99845 * 174.48242 * 15 14 13 17 17 H 1.08001 * 119.99926 * 5.05728 * 16 15 14 18 18 C 1.38651 * 120.00071 * 185.05545 * 16 15 14 19 19 N 1.31558 * 120.00153 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00135 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47308 * 59.99701 * 20 18 16 22 22 H 1.48502 * 109.47327 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47071 * 299.99688 * 20 18 16 24 24 C 1.38747 * 120.03894 * 180.02562 * 10 9 7 25 25 C 1.52997 * 109.46868 * 59.99945 * 7 6 5 26 26 H 1.09003 * 109.47289 * 60.00768 * 1 2 3 27 27 H 1.08996 * 109.47548 * 300.00257 * 1 2 3 28 28 H 1.08998 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47346 * 59.99619 * 3 2 1 30 30 H 1.08999 * 109.46769 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47088 * 299.99343 * 3 2 1 32 32 H 1.08998 * 109.47211 * 299.99803 * 4 2 1 33 33 H 1.09003 * 109.47182 * 60.00012 * 4 2 1 34 34 H 1.08998 * 109.47174 * 299.99949 * 5 4 2 35 35 H 1.09000 * 109.46993 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47396 * 179.97438 * 6 5 4 37 37 H 1.08993 * 109.47156 * 59.99335 * 6 5 4 38 38 H 0.96993 * 119.99974 * 265.00188 * 9 7 6 39 39 H 1.07997 * 119.96654 * 359.97438 * 11 10 9 40 40 H 1.08001 * 119.92678 * 180.27569 * 12 11 10 41 41 H 1.07996 * 119.96726 * 179.70017 * 13 12 11 42 42 H 0.97000 * 120.00468 * 180.02562 * 19 18 16 43 43 H 1.08006 * 120.07123 * 0.02562 * 24 10 9 44 44 H 1.08996 * 109.47237 * 180.02562 * 25 7 6 45 45 H 1.08998 * 109.47174 * 59.99928 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7202 1.2490 8 1 3.9334 0.3076 1.2487 9 7 4.0588 -1.4108 2.4452 10 6 5.3252 -1.1144 2.9545 11 6 6.1251 -0.1686 2.3238 12 6 7.3751 0.1293 2.8308 13 6 7.8394 -0.5203 3.9585 14 6 7.0472 -1.4707 4.5902 15 8 7.5041 -2.1079 5.6983 16 6 6.6438 -2.9332 6.3282 17 1 5.6704 -3.1262 5.9019 18 6 7.0088 -3.5341 7.5233 19 7 8.1942 -3.2987 8.0428 20 14 5.8172 -4.6781 8.3956 21 1 5.4863 -5.8202 7.5061 22 1 6.4423 -5.1865 9.6430 23 1 4.5753 -3.9365 8.7317 24 6 5.7887 -1.7683 4.0871 25 6 2.0405 -0.7208 1.2493 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6765 1.9564 0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.9329 0.3071 -1.2497 35 1 3.9334 -1.2341 -2.1397 36 1 5.1705 -1.4415 -0.0007 37 1 3.7176 -2.4692 0.0000 38 1 3.5027 -2.0737 2.8834 39 1 5.7671 0.3369 1.4391 40 1 7.9930 0.8677 2.3416 41 1 8.8190 -0.2886 4.3496 42 1 8.4497 -3.7194 8.8787 43 1 5.1714 -2.5074 4.5760 44 1 1.6771 -0.2066 2.1390 45 1 1.6776 -1.7486 1.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079975454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:08 Heat of formation + Delta-G solvation = -25.871851 kcal Electronic energy + Delta-G solvation = -23113.015470 eV Core-core repulsion = 19901.882195 eV Total energy + Delta-G solvation = -3211.133275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.02777 -38.79571 -36.81228 -34.64897 -32.69522 -32.13991 -30.42590 -28.69649 -27.60747 -27.24501 -26.50919 -25.18234 -22.73505 -21.62280 -21.51151 -20.10852 -18.66326 -17.80993 -17.20301 -15.95768 -15.29282 -15.22163 -14.91359 -14.53732 -14.40965 -14.04915 -13.92370 -13.68362 -13.44656 -13.33922 -12.85943 -12.72312 -12.34930 -12.21653 -12.07612 -11.89736 -11.63960 -11.58885 -11.44096 -11.18393 -11.11033 -10.92175 -10.81424 -10.66149 -10.42422 -10.30673 -10.28955 -10.12847 -9.33337 -9.30005 -8.71367 -7.30086 -6.70066 -6.37118 -3.96332 2.43799 2.62944 3.16393 3.18263 3.20275 3.76863 4.02861 4.44810 4.51017 4.64552 4.75200 4.97710 5.00060 5.18371 5.18619 5.21514 5.32258 5.33262 5.42412 5.45389 5.49318 5.51697 5.64342 5.74619 5.75611 5.80934 5.85287 5.87348 5.95817 6.03531 6.09380 6.10536 6.20734 6.23849 6.33518 6.38750 6.46286 6.71813 6.72928 7.10668 7.19962 7.44682 7.54532 7.73653 8.09289 8.10125 8.28639 9.09005 9.82332 10.81334 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021308 B = 0.003583 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.740735 B = 7813.068902 C = 8666.984885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.135 4.135 7 C 0.157 3.843 8 H 0.080 0.920 9 N -0.751 5.751 10 C 0.252 3.748 11 C -0.280 4.280 12 C -0.040 4.040 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.866 5.866 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.304 4.304 25 C -0.115 4.115 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.392 0.608 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.269 0.731 43 H 0.123 0.877 44 H 0.067 0.933 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 5.930 -16.875 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.205 4.205 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.174 4.174 7 C 0.051 3.949 8 H 0.098 0.902 9 N -0.381 5.381 10 C 0.151 3.849 11 C -0.303 4.303 12 C -0.059 4.059 13 C -0.259 4.259 14 C 0.135 3.865 15 O -0.082 6.082 16 C -0.465 4.465 17 H 0.107 0.893 18 C -0.165 4.165 19 N -0.501 5.501 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.327 4.327 25 C -0.153 4.153 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.226 0.774 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.141 0.859 44 H 0.086 0.914 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.184 5.972 -16.679 22.083 hybrid contribution -0.878 -0.930 0.607 1.416 sum -14.063 5.042 -16.072 21.943 Atomic orbital electron populations 1.21860 0.94580 1.01687 1.01693 1.20473 0.95157 0.95596 0.94863 1.22007 1.01726 0.95135 1.01588 1.21617 0.95772 1.00291 0.96916 1.21556 0.95351 1.01014 0.97800 1.22058 1.01468 0.99643 0.94246 1.20813 0.92811 0.96611 0.84646 0.90218 1.44637 1.16376 1.46524 1.30514 1.17465 0.84208 0.92155 0.91112 1.20091 0.97418 1.07359 1.05390 1.20373 0.94549 0.96835 0.94186 1.20026 1.01717 1.03250 1.00882 1.19068 0.90853 0.89491 0.87051 1.83985 1.38956 1.51846 1.33453 1.21247 0.97723 1.23063 1.04492 0.89283 1.25257 0.97164 0.98216 0.95906 1.70031 1.18922 1.41855 1.19308 0.85817 0.79391 0.79683 0.78717 1.19624 1.20329 1.19621 1.20506 0.99851 1.10380 1.01999 1.21849 0.94928 1.00843 0.97726 0.92692 0.92620 0.92738 0.92651 0.91831 0.92798 0.92045 0.92115 0.91636 0.92084 0.91292 0.92097 0.77396 0.87830 0.87315 0.87006 0.92103 0.85910 0.91424 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.48 37.16 0.31 -0.74 16 2 C -0.06 -0.51 0.77 -154.51 -0.12 -0.62 16 3 C -0.15 -1.23 7.78 37.16 0.29 -0.95 16 4 C -0.11 -0.88 4.73 -26.73 -0.13 -1.01 16 5 C -0.12 -1.08 5.65 -26.73 -0.15 -1.23 16 6 C -0.14 -1.53 5.43 -26.73 -0.15 -1.68 16 7 C 0.16 1.89 1.87 -67.93 -0.13 1.76 16 8 H 0.08 1.02 4.78 -51.93 -0.25 0.77 16 9 N -0.75 -11.33 5.25 -52.18 -0.27 -11.60 16 10 C 0.25 4.78 6.63 -83.81 -0.56 4.23 16 11 C -0.28 -5.06 8.84 -39.33 -0.35 -5.41 16 12 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 13 C -0.24 -5.30 9.99 -39.35 -0.39 -5.69 16 14 C 0.19 4.78 6.64 -39.14 -0.26 4.52 16 15 O -0.18 -5.28 9.76 0.04 0.00 -5.28 16 16 C -0.39 -11.15 9.49 30.89 0.29 -10.85 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.87 -25.93 13.67 55.48 0.76 -25.17 16 20 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 C -0.30 -6.84 9.01 -39.20 -0.35 -7.19 16 25 C -0.12 -1.15 4.20 -26.73 -0.11 -1.27 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.57 4.80 -51.93 -0.25 0.32 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.90 7.67 -51.93 -0.40 0.51 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.39 5.59 8.61 -40.82 -0.35 5.24 16 39 H 0.10 1.63 6.08 -52.49 -0.32 1.31 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 41 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 43 H 0.12 2.78 5.64 -52.48 -0.30 2.49 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -30.85 347.77 -8.69 -39.53 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.10 Total: 7.67 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.29 Total: -26.30 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.48 Total: -36.78 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.00 Total: -5.28 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.85 -8.69 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079975454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.659 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds