Wall clock time and date at job start Tue Mar 31 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46668 * 2 1 4 4 C 1.53000 * 109.47120 * 240.00038 * 2 1 3 5 5 C 1.52997 * 109.46809 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47374 * 60.00075 * 5 4 2 7 7 C 1.53009 * 109.46962 * 299.99745 * 6 5 4 8 8 H 1.09001 * 109.47027 * 300.00391 * 7 6 5 9 9 N 1.46497 * 109.47187 * 179.97438 * 7 6 5 10 10 C 1.39675 * 119.99688 * 85.00308 * 9 7 6 11 11 C 1.39004 * 120.04130 * 359.72209 * 10 9 7 12 12 C 1.38146 * 120.05961 * 179.69779 * 11 10 9 13 13 C 1.38170 * 120.14606 * 0.60634 * 12 11 10 14 14 C 1.38917 * 120.07498 * 359.67287 * 13 12 11 15 15 O 1.35751 * 120.02878 * 180.02562 * 14 13 12 16 16 C 1.34831 * 116.99845 * 174.48242 * 15 14 13 17 17 H 1.08001 * 119.99926 * 5.05728 * 16 15 14 18 18 C 1.38651 * 120.00071 * 185.05545 * 16 15 14 19 19 N 1.31558 * 120.00153 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00135 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47308 * 59.99701 * 20 18 16 22 22 H 1.48502 * 109.47327 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47071 * 299.99688 * 20 18 16 24 24 C 1.38747 * 120.03894 * 180.02562 * 10 9 7 25 25 C 1.52997 * 109.46868 * 59.99945 * 7 6 5 26 26 H 1.09003 * 109.47289 * 60.00768 * 1 2 3 27 27 H 1.08996 * 109.47548 * 300.00257 * 1 2 3 28 28 H 1.08998 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47346 * 59.99619 * 3 2 1 30 30 H 1.08999 * 109.46769 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47088 * 299.99343 * 3 2 1 32 32 H 1.08998 * 109.47211 * 299.99803 * 4 2 1 33 33 H 1.09003 * 109.47182 * 60.00012 * 4 2 1 34 34 H 1.08998 * 109.47174 * 299.99949 * 5 4 2 35 35 H 1.09000 * 109.46993 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47396 * 179.97438 * 6 5 4 37 37 H 1.08993 * 109.47156 * 59.99335 * 6 5 4 38 38 H 0.96993 * 119.99974 * 265.00188 * 9 7 6 39 39 H 1.07997 * 119.96654 * 359.97438 * 11 10 9 40 40 H 1.08001 * 119.92678 * 180.27569 * 12 11 10 41 41 H 1.07996 * 119.96726 * 179.70017 * 13 12 11 42 42 H 0.97000 * 120.00468 * 180.02562 * 19 18 16 43 43 H 1.08006 * 120.07123 * 0.02562 * 24 10 9 44 44 H 1.08996 * 109.47237 * 180.02562 * 25 7 6 45 45 H 1.08998 * 109.47174 * 59.99928 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7202 1.2490 8 1 3.9334 0.3076 1.2487 9 7 4.0588 -1.4108 2.4452 10 6 5.3252 -1.1144 2.9545 11 6 6.1251 -0.1686 2.3238 12 6 7.3751 0.1293 2.8308 13 6 7.8394 -0.5203 3.9585 14 6 7.0472 -1.4707 4.5902 15 8 7.5041 -2.1079 5.6983 16 6 6.6438 -2.9332 6.3282 17 1 5.6704 -3.1262 5.9019 18 6 7.0088 -3.5341 7.5233 19 7 8.1942 -3.2987 8.0428 20 14 5.8172 -4.6781 8.3956 21 1 5.4863 -5.8202 7.5061 22 1 6.4423 -5.1865 9.6430 23 1 4.5753 -3.9365 8.7317 24 6 5.7887 -1.7683 4.0871 25 6 2.0405 -0.7208 1.2493 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6765 1.9564 0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.9329 0.3071 -1.2497 35 1 3.9334 -1.2341 -2.1397 36 1 5.1705 -1.4415 -0.0007 37 1 3.7176 -2.4692 0.0000 38 1 3.5027 -2.0737 2.8834 39 1 5.7671 0.3369 1.4391 40 1 7.9930 0.8677 2.3416 41 1 8.8190 -0.2886 4.3496 42 1 8.4497 -3.7194 8.8787 43 1 5.1714 -2.5074 4.5760 44 1 1.6771 -0.2066 2.1390 45 1 1.6776 -1.7486 1.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079975454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:07 Heat of formation + Delta-G solvation = -43.314197 kcal Electronic energy + Delta-G solvation = -23113.771827 eV Core-core repulsion = 19901.882195 eV Total energy + Delta-G solvation = -3211.889632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09438 -40.36154 -38.45104 -35.97470 -34.22202 -33.53395 -31.64501 -30.36909 -28.71630 -28.16473 -27.33950 -27.10427 -23.83712 -23.23519 -22.55666 -21.47910 -19.72583 -19.53651 -18.75820 -17.27436 -16.82641 -16.55456 -16.00404 -15.88745 -15.60025 -15.50047 -15.28483 -14.98339 -14.66761 -14.42480 -14.32117 -13.99601 -13.55997 -13.46786 -13.24786 -12.91929 -12.76644 -12.69694 -12.50484 -12.44687 -12.31035 -12.19724 -12.13195 -11.86462 -11.81986 -11.36763 -11.22697 -11.16879 -10.92706 -10.82414 -10.52842 -9.10088 -8.45089 -8.21060 -6.13589 0.77182 0.93139 1.33625 1.45557 1.50316 2.18693 2.53397 2.89627 3.27213 3.59736 3.68722 3.78451 3.91897 4.15794 4.21801 4.23201 4.34101 4.43025 4.46212 4.51026 4.57988 4.62967 4.73915 4.75262 4.83806 4.85454 4.96824 5.01638 5.08846 5.11298 5.14674 5.16143 5.17395 5.21189 5.23928 5.32681 5.40271 5.44684 5.50223 5.52657 5.66354 5.76342 5.81449 6.05383 6.12955 6.63471 6.89317 7.00125 7.83622 8.78446 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021308 B = 0.003583 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.740735 B = 7813.068902 C = 8666.984885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.148 4.148 4 C -0.106 4.106 5 C -0.115 4.115 6 C -0.131 4.131 7 C 0.154 3.846 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.260 3.740 11 C -0.264 4.264 12 C -0.026 4.026 13 C -0.263 4.263 14 C 0.153 3.847 15 O -0.233 6.233 16 C -0.412 4.412 17 H 0.098 0.902 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.258 1.258 24 C -0.319 4.319 25 C -0.111 4.111 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.396 0.604 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.106 0.894 42 H 0.272 0.728 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 6.748 -19.584 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 C -0.205 4.205 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.170 4.170 7 C 0.050 3.950 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.155 3.845 11 C -0.287 4.287 12 C -0.045 4.045 13 C -0.284 4.284 14 C 0.102 3.898 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.837 3.163 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.343 4.343 25 C -0.149 4.149 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.231 0.769 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.850 6.815 -19.463 26.009 hybrid contribution -0.150 -1.008 1.147 1.534 sum -16.000 5.807 -18.316 25.003 Atomic orbital electron populations 1.21841 0.93677 1.01970 1.02168 1.20462 0.95835 0.95451 0.94001 1.22014 1.01364 0.95071 1.02066 1.21608 0.94953 1.00492 0.97274 1.21534 0.96034 1.01025 0.96673 1.21997 1.00330 0.99715 0.94968 1.21049 0.94304 0.96158 0.83495 0.90245 1.44836 1.14856 1.46240 1.31080 1.17546 0.85693 0.91370 0.89856 1.20538 0.96646 1.05918 1.05558 1.20820 0.95051 0.96192 0.92407 1.20249 1.01714 1.03927 1.02509 1.19634 0.92649 0.90692 0.86817 1.83946 1.40446 1.53807 1.35687 1.21751 0.98284 1.23541 1.05251 0.88439 1.26584 0.99246 0.99894 0.96353 1.70184 1.21489 1.44162 1.20262 0.84664 0.76865 0.77337 0.77414 1.18210 1.19481 1.18261 1.20518 0.99157 1.11087 1.03499 1.21820 0.93129 1.01301 0.98626 0.91594 0.92829 0.92585 0.93075 0.92342 0.91533 0.92042 0.90619 0.91064 0.91261 0.92985 0.92521 0.76930 0.84339 0.83100 0.87603 0.91875 0.86985 0.91971 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.48 71.98 0.61 -1.04 16 2 C -0.06 -0.77 0.77 -52.18 -0.04 -0.81 16 3 C -0.15 -1.99 7.78 71.98 0.56 -1.43 16 4 C -0.11 -1.34 4.73 30.59 0.14 -1.19 16 5 C -0.11 -1.68 5.65 30.59 0.17 -1.51 16 6 C -0.13 -2.62 5.43 30.60 0.17 -2.46 16 7 C 0.15 3.31 1.87 44.99 0.08 3.39 16 8 H 0.08 1.75 4.78 -2.39 -0.01 1.74 16 9 N -0.74 -21.15 5.25 -319.01 -1.67 -22.82 16 10 C 0.26 9.56 6.63 38.20 0.25 9.82 16 11 C -0.26 -8.83 8.84 22.43 0.20 -8.63 16 12 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 13 C -0.26 -11.96 9.99 22.42 0.22 -11.74 16 14 C 0.15 8.08 6.64 22.56 0.15 8.23 16 15 O -0.23 -14.63 9.76 -22.76 -0.22 -14.86 16 16 C -0.41 -24.92 9.49 67.92 0.64 -24.27 16 17 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 18 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 19 N -0.92 -58.16 13.67 21.61 0.30 -57.87 16 20 Si 1.02 44.01 29.55 68.60 2.03 46.04 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 24 C -0.32 -14.72 9.01 22.52 0.20 -14.52 16 25 C -0.11 -1.93 4.20 30.59 0.13 -1.80 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.84 4.80 -2.39 -0.01 0.83 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.99 6.43 -2.39 -0.02 0.97 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.05 1.22 7.67 -2.39 -0.02 1.21 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.40 10.81 8.61 -92.71 -0.80 10.01 16 39 H 0.14 3.72 6.08 -2.91 -0.02 3.70 16 40 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -71.68 347.77 4.80 -66.88 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.19 Total: 32.22 kcal Atomic # 6 Polarization: -53.78 SS G_CDS: 4.19 Total: -49.59 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.38 Total: -80.69 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.68 4.80 -66.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079975454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.569 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds