Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46961 * 2 1 4 4 C 1.53004 * 109.47467 * 240.00438 * 2 1 3 5 5 C 1.53001 * 109.46490 * 300.00063 * 4 2 1 6 6 C 1.52998 * 109.47168 * 299.99361 * 5 4 2 7 7 C 1.53000 * 109.47071 * 60.00566 * 6 5 4 8 8 H 1.09010 * 109.46883 * 59.99524 * 7 6 5 9 9 N 1.46494 * 109.47592 * 179.97438 * 7 6 5 10 10 C 1.39674 * 120.00122 * 274.99870 * 9 7 6 11 11 C 1.39006 * 120.03845 * 359.73120 * 10 9 7 12 12 C 1.38155 * 120.06158 * 179.69942 * 11 10 9 13 13 C 1.38169 * 120.14154 * 0.58986 * 12 11 10 14 14 C 1.38913 * 120.07774 * 359.68292 * 13 12 11 15 15 O 1.35753 * 120.02994 * 179.97438 * 14 13 12 16 16 C 1.34830 * 117.00030 * 174.48476 * 15 14 13 17 17 H 1.07999 * 120.00126 * 5.05523 * 16 15 14 18 18 C 1.38655 * 120.00008 * 185.06008 * 16 15 14 19 19 N 1.31556 * 120.00056 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46898 * 89.99671 * 20 18 16 22 22 H 1.48498 * 109.47069 * 209.99793 * 20 18 16 23 23 H 1.48498 * 109.47464 * 330.00184 * 20 18 16 24 24 C 1.38746 * 120.04143 * 179.97438 * 10 9 7 25 25 C 1.53002 * 109.47153 * 299.99945 * 7 6 5 26 26 H 1.08991 * 109.47104 * 300.00015 * 1 2 3 27 27 H 1.09007 * 109.47102 * 60.00154 * 1 2 3 28 28 H 1.09004 * 109.46570 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47403 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47440 * 300.00167 * 3 2 1 31 31 H 1.09000 * 109.47313 * 60.00230 * 3 2 1 32 32 H 1.08994 * 109.47164 * 59.99501 * 4 2 1 33 33 H 1.09000 * 109.47223 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47758 * 59.99879 * 5 4 2 35 35 H 1.09004 * 109.46890 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47278 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47657 * 300.00575 * 6 5 4 38 38 H 0.97002 * 120.00502 * 94.99675 * 9 7 6 39 39 H 1.08007 * 119.97117 * 359.96596 * 11 10 9 40 40 H 1.07998 * 119.92719 * 180.27390 * 12 11 10 41 41 H 1.07998 * 119.96066 * 179.70218 * 13 12 11 42 42 H 0.97004 * 119.99919 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.07283 * 359.97438 * 24 10 9 44 44 H 1.09000 * 109.47349 * 299.99848 * 25 7 6 45 45 H 1.08994 * 109.47291 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5301 -2.1636 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2491 9 7 2.0179 -2.8547 2.4453 10 6 1.3161 -3.9497 2.9544 11 6 0.1515 -4.3812 2.3299 12 6 -0.5397 -5.4681 2.8294 13 6 -0.0829 -6.1220 3.9576 14 6 1.0771 -5.6923 4.5896 15 8 1.5247 -6.3352 5.6983 16 6 2.7144 -5.9415 6.1957 17 1 3.2268 -5.0946 5.7637 18 6 3.2802 -6.6239 7.2619 19 7 2.6559 -7.6553 7.7885 20 14 4.9288 -6.0788 7.9507 21 1 4.7095 -5.0804 9.0279 22 1 5.6472 -7.2547 8.5043 23 1 5.7404 -5.4680 6.8674 24 6 1.7776 -4.6050 4.0869 25 6 2.0401 -0.7213 1.2492 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 -0.2074 -2.1392 33 1 3.1301 -0.7215 -1.2490 34 1 0.4401 -2.1637 -1.2493 35 1 1.8938 -2.6776 -2.1391 36 1 1.6771 -3.9127 -0.0003 37 1 3.1301 -2.8849 -0.0001 38 1 2.8284 -2.5518 2.8838 39 1 -0.2109 -3.8689 1.4509 40 1 -1.4418 -5.8042 2.3399 41 1 -0.6282 -6.9684 4.3483 42 1 3.0519 -8.1329 8.5341 43 1 2.6802 -4.2697 4.5761 44 1 3.1301 -0.7212 1.2493 45 1 1.6764 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079975458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = -25.940535 kcal Electronic energy + Delta-G solvation = -23113.744352 eV Core-core repulsion = 19902.608098 eV Total energy + Delta-G solvation = -3211.136254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.02672 -38.79589 -36.81266 -34.64930 -32.69492 -32.14034 -30.42575 -28.69647 -27.60816 -27.24573 -26.50832 -25.18421 -22.73495 -21.62413 -21.51151 -20.10620 -18.66361 -17.81109 -17.20380 -15.95887 -15.29357 -15.22112 -14.91384 -14.53640 -14.40458 -14.04924 -13.92331 -13.68482 -13.46738 -13.32470 -12.84558 -12.72103 -12.36681 -12.22350 -12.07344 -11.89228 -11.63929 -11.58969 -11.44609 -11.18735 -11.11087 -10.93939 -10.80574 -10.64635 -10.41034 -10.31890 -10.28557 -10.12753 -9.32851 -9.30043 -8.71757 -7.30152 -6.70054 -6.37391 -3.96450 2.43708 2.62808 3.16312 3.17212 3.21607 3.76839 4.02670 4.44788 4.51013 4.64523 4.75147 4.97812 5.00027 5.18352 5.19343 5.20672 5.32539 5.33139 5.42070 5.45251 5.49458 5.51724 5.64262 5.74616 5.75578 5.80931 5.85198 5.87378 5.95627 6.03661 6.09377 6.10589 6.20768 6.24001 6.33455 6.38784 6.46322 6.71786 6.72878 7.10634 7.20227 7.44627 7.54531 7.73604 8.09227 8.10096 8.28588 9.08921 9.82297 10.81149 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.003572 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.894268 B = 7837.334348 C = 8656.083961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.135 4.135 7 C 0.157 3.843 8 H 0.080 0.920 9 N -0.751 5.751 10 C 0.252 3.748 11 C -0.280 4.280 12 C -0.040 4.040 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.180 6.180 16 C -0.388 4.388 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.939 3.061 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.303 4.303 25 C -0.115 4.115 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.392 0.608 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.268 0.732 43 H 0.123 0.877 44 H 0.064 0.936 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.377 15.071 -16.583 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.174 4.174 7 C 0.051 3.949 8 H 0.098 0.902 9 N -0.381 5.381 10 C 0.151 3.849 11 C -0.303 4.303 12 C -0.059 4.059 13 C -0.259 4.259 14 C 0.135 3.865 15 O -0.083 6.083 16 C -0.465 4.465 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.501 5.501 20 Si 0.764 3.236 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.327 4.327 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.226 0.774 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.141 0.859 44 H 0.083 0.917 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.530 14.772 -16.390 22.118 hybrid contribution 1.258 0.409 0.518 1.421 sum -0.272 15.181 -15.872 21.965 Atomic orbital electron populations 1.22005 0.94540 1.02318 1.01585 1.20474 0.95816 0.94934 0.94865 1.21861 1.00912 0.95360 1.01690 1.21618 1.00523 0.95547 0.96914 1.21559 1.01050 0.95302 0.97807 1.22058 1.01057 1.00060 0.94245 1.20814 0.99089 0.90334 0.84652 0.90217 1.44638 1.29625 1.33276 1.30513 1.17464 0.90315 0.85980 0.91176 1.20094 0.99892 1.04521 1.05752 1.20374 0.97361 0.93909 0.94297 1.20025 0.99813 1.05678 1.00356 1.19069 0.91874 0.89582 0.85930 1.83986 1.35492 1.54280 1.34514 1.21294 0.95045 1.14861 1.15262 0.89231 1.25261 0.99438 0.95573 0.96307 1.70043 1.38238 1.18462 1.23353 0.85745 0.80391 0.78237 0.79218 1.19983 1.20314 1.19336 1.20509 1.06500 1.03599 1.02122 1.21849 1.00858 0.94910 0.97720 0.92650 0.92801 0.91831 0.92736 0.92686 0.92631 0.92108 0.92044 0.91633 0.92082 0.91296 0.92093 0.77397 0.87831 0.87312 0.87005 0.92162 0.85904 0.91720 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 7.78 37.16 0.29 -0.94 16 2 C -0.06 -0.51 0.77 -154.51 -0.12 -0.62 16 3 C -0.14 -1.05 8.47 37.16 0.31 -0.73 16 4 C -0.11 -0.88 4.73 -26.73 -0.13 -1.01 16 5 C -0.12 -1.08 5.65 -26.73 -0.15 -1.23 16 6 C -0.14 -1.54 5.45 -26.73 -0.15 -1.69 16 7 C 0.16 1.89 1.87 -67.93 -0.13 1.76 16 8 H 0.08 1.02 4.75 -51.92 -0.25 0.77 16 9 N -0.75 -11.34 5.25 -52.18 -0.27 -11.61 16 10 C 0.25 4.78 6.63 -83.81 -0.56 4.23 16 11 C -0.28 -5.06 8.86 -39.33 -0.35 -5.41 16 12 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 13 C -0.24 -5.29 9.99 -39.36 -0.39 -5.69 16 14 C 0.19 4.78 6.64 -39.14 -0.26 4.52 16 15 O -0.18 -5.28 9.76 0.04 0.00 -5.28 16 16 C -0.39 -11.13 9.49 30.89 0.29 -10.83 16 17 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.87 -25.92 13.67 55.48 0.76 -25.16 16 20 Si 0.94 20.95 29.55 -169.99 -5.02 15.92 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C -0.30 -6.84 9.01 -39.20 -0.35 -7.19 16 25 C -0.12 -1.15 4.20 -26.73 -0.11 -1.26 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 28 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.39 5.60 8.61 -40.82 -0.35 5.25 16 39 H 0.10 1.63 6.14 -52.48 -0.32 1.30 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 41 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.12 2.79 5.64 -52.49 -0.30 2.49 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -30.85 347.94 -8.69 -39.54 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.11 Total: 7.64 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -2.29 Total: -26.29 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.48 Total: -36.77 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.00 Total: -5.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.85 -8.69 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079975458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.603 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds